RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 PKNOX1P55347 436 aa8.86□□□□□ -0.99
TRIM28-210ENST00000597618 CSNK2A1P68400 391 aaPredicted RBP8.86□□□□□ -0.99
TRIM28-210ENST00000597618 POU6F2P78424 691 aaPredicted RBP8.86□□□□□ -0.99
TRIM28-210ENST00000597618 LCP2Q13094 533 aa8.86□□□□□ -0.99
TRIM28-210ENST00000597618 TOMM34Q15785 309 aaPredicted RBP8.86□□□□□ -0.99
TRIM28-210ENST00000597618 GABRA6Q16445 453 aa8.86□□□□□ -0.99
TRIM28-210ENST00000597618 IMPG1Q17R60 797 aa8.86□□□□□ -0.99
TRIM28-210ENST00000597618 SLC25A53Q5H9E4 307 aa8.86□□□□□ -0.99
TRIM28-210ENST00000597618 ZNF678Q5SXM1 525 aa8.86□□□□□ -0.99
TRIM28-210ENST00000597618 CCNJQ5T5M9 372 aa8.86□□□□□ -0.99
TRIM28-210ENST00000597618 ZCCHC12Q6PEW1 402 aa8.86□□□□□ -0.99
TRIM28-210ENST00000597618 DEF8Q6ZN54 512 aa8.86□□□□□ -0.99
TRIM28-210ENST00000597618 ANKS4BQ8N8V4 417 aa8.86□□□□□ -0.99
TRIM28-210ENST00000597618 C1orf162Q8NEQ5 155 aaPredicted RBP8.86□□□□□ -0.99
TRIM28-210ENST00000597618 GPR119Q8TDV5 335 aa8.86□□□□□ -0.99
TRIM28-210ENST00000597618 JADE3Q92613 823 aa8.86□□□□□ -0.99
TRIM28-210ENST00000597618 ZNF764Q96H86 408 aaPredicted RBP8.86□□□□□ -0.99
TRIM28-210ENST00000597618 OR5B2Q96R09 309 aa8.86□□□□□ -0.99
TRIM28-210ENST00000597618 VRK1Q99986 396 aaPredicted RBP8.86□□□□□ -0.99
TRIM28-210ENST00000597618 BTBD2Q9BX70 525 aa8.86□□□□□ -0.99
TRIM28-210ENST00000597618 HOXD1Q9GZZ0 328 aa8.86□□□□□ -0.99
TRIM28-210ENST00000597618 UTP11Q9Y3A2 253 aaKnown RBP8.86□□□□□ -0.99
TRIM28-210ENST00000597618 POLR3HQ9Y535 204 aaPredicted RBP8.86□□□□□ -0.99
TRIM28-210ENST00000597618 TRRAPQ9Y4A5 3859 aa8.85□□□□□ -0.99
TRIM28-210ENST00000597618 ARFGEF3Q5TH69 2177 aa8.85□□□□□ -0.99
TRIM28-210ENST00000597618 GTPBP1O00178 669 aaKnown RBP8.85□□□□□ -0.99
TRIM28-210ENST00000597618 RAD51CO43502 376 aa8.85□□□□□ -0.99
TRIM28-210ENST00000597618 MRPL33O75394 65 aaKnown RBP8.85□□□□□ -0.99
TRIM28-210ENST00000597618 STAMBPO95630 424 aa8.85□□□□□ -0.99
TRIM28-210ENST00000597618 ERCC1P07992 297 aaPredicted RBP8.85□□□□□ -0.99
TRIM28-210ENST00000597618 INHBAP08476 426 aa8.85□□□□□ -0.99
TRIM28-210ENST00000597618 ITGA5P08648 1049 aa8.85□□□□□ -0.99
TRIM28-210ENST00000597618 TACSTD2P09758 323 aa8.85□□□□□ -0.99
TRIM28-210ENST00000597618 SBK3P0C264 359 aa8.85□□□□□ -0.99
TRIM28-210ENST00000597618 CREB1P16220 341 aa8.85□□□□□ -0.99
TRIM28-210ENST00000597618 TAC1P20366 129 aa8.85□□□□□ -0.99
TRIM28-210ENST00000597618 GIFP27352 417 aa8.85□□□□□ -0.99
TRIM28-210ENST00000597618 IL2RGP31785 369 aa8.85□□□□□ -0.99
TRIM28-210ENST00000597618 PHBP35232 272 aa8.85□□□□□ -0.99
TRIM28-210ENST00000597618 SERPINF1P36955 418 aa8.85□□□□□ -0.99
TRIM28-210ENST00000597618 DIO1P49895 249 aa8.85□□□□□ -0.99
TRIM28-210ENST00000597618 DVL1P1P54792 670 aaPredicted RBP8.85□□□□□ -0.99
TRIM28-210ENST00000597618 CDH15P55291 814 aa8.85□□□□□ -0.99
TRIM28-210ENST00000597618 QPRTQ15274 297 aa8.85□□□□□ -0.99
TRIM28-210ENST00000597618 PDLIM3Q53GG5 364 aaPredicted RBP8.85□□□□□ -0.99
TRIM28-210ENST00000597618 KLHL26Q53HC5 615 aa8.85□□□□□ -0.99
TRIM28-210ENST00000597618 UNC50Q53HI1 259 aa8.85□□□□□ -0.99
TRIM28-210ENST00000597618 PRR31Q5SQ13 230 aa8.85□□□□□ -0.99
TRIM28-210ENST00000597618 LRIG3Q6UXM1 1119 aa8.85□□□□□ -0.99
TRIM28-210ENST00000597618 MTDHQ86UE4 582 aaKnown RBP8.85□□□□□ -0.99
TRIM28-210ENST00000597618 TMEM151AQ8N4L1 468 aa8.85□□□□□ -0.99
TRIM28-210ENST00000597618 TMCO5AQ8N6Q1 288 aa8.85□□□□□ -0.99
TRIM28-210ENST00000597618 WDR31Q8NA23 367 aa8.85□□□□□ -0.99
TRIM28-210ENST00000597618 OR5W2Q8NH69 310 aa8.85□□□□□ -0.99
TRIM28-210ENST00000597618 ZNF418Q8TF45 676 aaPredicted RBP8.85□□□□□ -0.99
TRIM28-210ENST00000597618 FAM216AQ8WUB2 273 aa8.85□□□□□ -0.99
TRIM28-210ENST00000597618 CIDECQ96AQ7 238 aaPredicted RBP8.85□□□□□ -0.99
TRIM28-210ENST00000597618 ZHX1-C8orf76Q96EF9 292 aa8.85□□□□□ -0.99
TRIM28-210ENST00000597618 OTUB1Q96FW1 271 aaPredicted RBP8.85□□□□□ -0.99
TRIM28-210ENST00000597618 TMEM237Q96Q45 408 aa8.85□□□□□ -0.99
TRIM28-210ENST00000597618 STACQ99469 402 aa8.85□□□□□ -0.99
TRIM28-210ENST00000597618 RAB1BQ9H0U4 201 aa8.85□□□□□ -0.99
TRIM28-210ENST00000597618 ACSS3Q9H6R3 686 aa8.85□□□□□ -0.99
TRIM28-210ENST00000597618 METTL17Q9H7H0 456 aaPredicted RBP8.85□□□□□ -0.99
TRIM28-210ENST00000597618 ANKZF1Q9H8Y5 726 aa8.85□□□□□ -0.99
TRIM28-210ENST00000597618 SLC17A5Q9NRA2 495 aa8.85□□□□□ -0.99
TRIM28-210ENST00000597618 DUSP22Q9NRW4 184 aa8.85□□□□□ -0.99
TRIM28-210ENST00000597618 SERINC1Q9NRX5 453 aa8.85□□□□□ -0.99
TRIM28-210ENST00000597618 GIN1Q9NXP7 522 aa8.85□□□□□ -0.99
TRIM28-210ENST00000597618 DCTN4Q9UJW0 460 aa8.85□□□□□ -0.99
TRIM28-210ENST00000597618 FBXO9Q9UK97 447 aaPredicted RBP8.85□□□□□ -0.99
TRIM28-210ENST00000597618 MOKQ9UQ07 419 aa8.85□□□□□ -0.99
TRIM28-210ENST00000597618 TIMM22Q9Y584 194 aa8.85□□□□□ -0.99
TRIM28-210ENST00000597618 PCDHB14Q9Y5E9 798 aa8.85□□□□□ -0.99
TRIM28-210ENST00000597618 ZNF716A6NP11 495 aa8.84□□□□□ -0.99
TRIM28-210ENST00000597618 B9A039 149 aa8.84□□□□□ -0.99
TRIM28-210ENST00000597618 TRIM77I1YAP6 450 aa8.84□□□□□ -0.99
TRIM28-210ENST00000597618 PDLIM1O00151 329 aa8.84□□□□□ -0.99
TRIM28-210ENST00000597618 SULT2B1O00204 365 aa8.84□□□□□ -0.99
TRIM28-210ENST00000597618 PDE5AO76074 875 aa8.84□□□□□ -0.99
TRIM28-210ENST00000597618 WNT11O96014 354 aa8.84□□□□□ -0.99
TRIM28-210ENST00000597618 DAOP14920 347 aa8.84□□□□□ -0.99
TRIM28-210ENST00000597618 PPOXP50336 477 aa8.84□□□□□ -0.99
TRIM28-210ENST00000597618 SERPINB9P50453 376 aa8.84□□□□□ -0.99
TRIM28-210ENST00000597618 RNF144AP50876 292 aaPredicted RBP8.84□□□□□ -0.99
TRIM28-210ENST00000597618 IDH3GP51553 393 aaPredicted RBP8.84□□□□□ -0.99
TRIM28-210ENST00000597618 CCR4P51679 360 aa8.84□□□□□ -0.99
TRIM28-210ENST00000597618 PRPS1P60891 318 aa8.84□□□□□ -0.99
TRIM28-210ENST00000597618 SLC25A3Q00325 362 aa8.84□□□□□ -0.99
TRIM28-210ENST00000597618 TGFBR3Q03167 851 aa8.84□□□□□ -0.99
TRIM28-210ENST00000597618 LGALS3BPQ08380 585 aa8.84□□□□□ -0.99
TRIM28-210ENST00000597618 CBFBQ13951 182 aa8.84□□□□□ -0.99
TRIM28-210ENST00000597618 EFNB3Q15768 340 aa8.84□□□□□ -0.99
TRIM28-210ENST00000597618 NDUFAF6Q330K2 333 aa8.84□□□□□ -0.99
TRIM28-210ENST00000597618 TIGD2Q4W5G0 525 aa8.84□□□□□ -0.99
TRIM28-210ENST00000597618 SYT14P1Q58G82 188 aa8.84□□□□□ -0.99
TRIM28-210ENST00000597618 EXOSC6Q5RKV6 272 aaKnown RBP8.84□□□□□ -0.99
TRIM28-210ENST00000597618 TEX35Q5T0J7 233 aa8.84□□□□□ -0.99
TRIM28-210ENST00000597618 NOXRED1Q6NXP6 359 aa8.84□□□□□ -0.99
TRIM28-210ENST00000597618 KLHL24Q6TFL4 600 aa8.84□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms