RNA–Protein interactions for RNA: ENST00000595523.5

SHKBP1-206, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-206ENST00000595523 EXOSC3Q9NQT5 275 aaKnown RBP9.85□□□□□ -0.83
SHKBP1-206ENST00000595523 ST6GALNAC1Q9NSC7 600 aaPredicted RBP9.85□□□□□ -0.83
SHKBP1-206ENST00000595523 CHST2Q9Y4C5 530 aa9.85□□□□□ -0.83
SHKBP1-206ENST00000595523 GMEB1Q9Y692 573 aa9.85□□□□□ -0.83
SHKBP1-206ENST00000595523 ROS1P08922 2347 aa9.84□□□□□ -0.83
SHKBP1-206ENST00000595523 AP3D1O14617 1153 aa9.84□□□□□ -0.83
SHKBP1-206ENST00000595523 CGAP01215 116 aa9.84□□□□□ -0.83
SHKBP1-206ENST00000595523 CRHP06850 196 aa9.84□□□□□ -0.83
SHKBP1-206ENST00000595523 DBIP07108 87 aaKnown RBP9.84□□□□□ -0.83
SHKBP1-206ENST00000595523 PGCP20142 388 aa9.84□□□□□ -0.83
SHKBP1-206ENST00000595523 ME2P23368 584 aa9.84□□□□□ -0.83
SHKBP1-206ENST00000595523 UQCRC1P31930 480 aa9.84□□□□□ -0.83
SHKBP1-206ENST00000595523 RYKP34925 604 aa9.84□□□□□ -0.83
SHKBP1-206ENST00000595523 CRISP3P54108 245 aa9.84□□□□□ -0.83
SHKBP1-206ENST00000595523 KRTAP10-9P60411 292 aa9.84□□□□□ -0.83
SHKBP1-206ENST00000595523 SF3A3Q12874 501 aaKnown RBP eCLIP9.84□□□□□ -0.83
SHKBP1-206ENST00000595523 FADDQ13158 208 aa9.84□□□□□ -0.83
SHKBP1-206ENST00000595523 SELENBP1Q13228 472 aa9.84□□□□□ -0.83
SHKBP1-206ENST00000595523 SGCBQ16585 318 aa9.84□□□□□ -0.83
SHKBP1-206ENST00000595523 HSP90B2PQ58FF3 399 aa9.84□□□□□ -0.83
SHKBP1-206ENST00000595523 MRPL2Q5T653 305 aaKnown RBP9.84□□□□□ -0.83
SHKBP1-206ENST00000595523 HBMQ6B0K9 141 aa9.84□□□□□ -0.83
SHKBP1-206ENST00000595523 OR2A2Q6IF42 318 aa9.84□□□□□ -0.83
SHKBP1-206ENST00000595523 ZNF836Q6ZNA1 936 aa9.84□□□□□ -0.83
SHKBP1-206ENST00000595523 BTLAQ7Z6A9 289 aa9.84□□□□□ -0.83
SHKBP1-206ENST00000595523 VRK2Q86Y07 508 aa9.84□□□□□ -0.83
SHKBP1-206ENST00000595523 CMIPQ8IY22 773 aa9.84□□□□□ -0.83
SHKBP1-206ENST00000595523 DPP10Q8N608 796 aa9.84□□□□□ -0.83
SHKBP1-206ENST00000595523 WDR60Q8WVS4 1066 aa9.84□□□□□ -0.83
SHKBP1-206ENST00000595523 ST8SIA1Q92185 356 aa9.84□□□□□ -0.83
SHKBP1-206ENST00000595523 PMM1Q92871 262 aa9.84□□□□□ -0.83
SHKBP1-206ENST00000595523 C14orf79Q96F83 325 aa9.84□□□□□ -0.83
SHKBP1-206ENST00000595523 CCDC106Q9BWC9 280 aa9.84□□□□□ -0.83
SHKBP1-206ENST00000595523 RABEP2Q9H5N1 569 aa9.84□□□□□ -0.83
SHKBP1-206ENST00000595523 A4GALTQ9NPC4 353 aa9.84□□□□□ -0.83
SHKBP1-206ENST00000595523 ACER3Q9NUN7 267 aa9.84□□□□□ -0.83
SHKBP1-206ENST00000595523 RLIMQ9NVW2 624 aa9.84□□□□□ -0.83
SHKBP1-206ENST00000595523 STOML1Q9UBI4 398 aa9.84□□□□□ -0.83
SHKBP1-206ENST00000595523 PACSIN3Q9UKS6 424 aa9.84□□□□□ -0.83
SHKBP1-206ENST00000595523 TRIM33Q9UPN9 1127 aa9.84□□□□□ -0.83
SHKBP1-206ENST00000595523 TEP1Q99973 2627 aaKnown RBP9.84□□□□□ -0.83
SHKBP1-206ENST00000595523 CDHR4A6H8M9 788 aa9.83□□□□□ -0.84
SHKBP1-206ENST00000595523 A8MXE2 369 aa9.83□□□□□ -0.84
SHKBP1-206ENST00000595523 ATP8B1O43520 1251 aa9.83□□□□□ -0.84
SHKBP1-206ENST00000595523 FCGR2AP12318 317 aa9.83□□□□□ -0.84
SHKBP1-206ENST00000595523 IL7RP16871 459 aa9.83□□□□□ -0.84
SHKBP1-206ENST00000595523 GPX2P18283 190 aa9.83□□□□□ -0.84
SHKBP1-206ENST00000595523 KLK2P20151 261 aa9.83□□□□□ -0.84
SHKBP1-206ENST00000595523 MDH1P40925 334 aaKnown RBP9.83□□□□□ -0.84
SHKBP1-206ENST00000595523 EEF1A1P68104 462 aaKnown RBP9.83□□□□□ -0.84
SHKBP1-206ENST00000595523 SIRPAP78324 504 aa9.83□□□□□ -0.84
SHKBP1-206ENST00000595523 MERTKQ12866 999 aa9.83□□□□□ -0.84
SHKBP1-206ENST00000595523 ZNF239Q16600 458 aaKnown RBP9.83□□□□□ -0.84
SHKBP1-206ENST00000595523 TMEM176BQ3YBM2 270 aaPredicted RBP9.83□□□□□ -0.84
SHKBP1-206ENST00000595523 METTL21CQ5VZV1 264 aa9.83□□□□□ -0.84
SHKBP1-206ENST00000595523 C3orf33Q6P1S2 294 aa9.83□□□□□ -0.84
SHKBP1-206ENST00000595523 ZNF474Q6S9Z5 364 aaPredicted RBP9.83□□□□□ -0.84
SHKBP1-206ENST00000595523 PLEKHM3Q6ZWE6 761 aa9.83□□□□□ -0.84
SHKBP1-206ENST00000595523 LUZP2Q86TE4 346 aa9.83□□□□□ -0.84
SHKBP1-206ENST00000595523 CLIP4Q8N3C7 705 aa9.83□□□□□ -0.84
SHKBP1-206ENST00000595523 CNEP1R1Q8N9A8 125 aa9.83□□□□□ -0.84
SHKBP1-206ENST00000595523 ATP6V1C2Q8NEY4 427 aa9.83□□□□□ -0.84
SHKBP1-206ENST00000595523 OR52P1PQ8NH57 321 aa9.83□□□□□ -0.84
SHKBP1-206ENST00000595523 RNF128Q8TEB7 428 aa9.83□□□□□ -0.84
SHKBP1-206ENST00000595523 OSTF1Q92882 214 aa9.83□□□□□ -0.84
SHKBP1-206ENST00000595523 ZNF317Q96PQ6 595 aaPredicted RBP9.83□□□□□ -0.84
SHKBP1-206ENST00000595523 CPPED1Q9BRF8 314 aaPredicted RBP9.83□□□□□ -0.84
SHKBP1-206ENST00000595523 OPN3Q9H1Y3 402 aaPredicted RBP9.83□□□□□ -0.84
SHKBP1-206ENST00000595523 PIGMQ9H3S5 423 aa9.83□□□□□ -0.84
SHKBP1-206ENST00000595523 RAD21L1Q9H4I0 556 aa9.83□□□□□ -0.84
SHKBP1-206ENST00000595523 CTPS2Q9NRF8 586 aa9.83□□□□□ -0.84
SHKBP1-206ENST00000595523 THUMPD1Q9NXG2 353 aaKnown RBP9.83□□□□□ -0.84
SHKBP1-206ENST00000595523 PAQR5Q9NXK6 330 aaPredicted RBP9.83□□□□□ -0.84
SHKBP1-206ENST00000595523 GALNT8Q9NY28 637 aa9.83□□□□□ -0.84
SHKBP1-206ENST00000595523 CRIM1Q9NZV1 1036 aa9.83□□□□□ -0.84
SHKBP1-206ENST00000595523 KCNN3Q9UGI6 736 aa9.83□□□□□ -0.84
SHKBP1-206ENST00000595523 LEF1Q9UJU2 399 aaPredicted RBP9.83□□□□□ -0.84
SHKBP1-206ENST00000595523 CLEC4AQ9UMR7 237 aa9.83□□□□□ -0.84
SHKBP1-206ENST00000595523 A0A0G2JPF8 293 aa9.82□□□□□ -0.84
SHKBP1-206ENST00000595523 A0A1W2PNR3 127 aa9.82□□□□□ -0.84
SHKBP1-206ENST00000595523 HNRNPCL2B2RXH8 293 aa9.82□□□□□ -0.84
SHKBP1-206ENST00000595523 HNRNPCL3B7ZW38 293 aa9.82□□□□□ -0.84
SHKBP1-206ENST00000595523 FAAHO00519 579 aa9.82□□□□□ -0.84
SHKBP1-206ENST00000595523 FBP2O00757 339 aa9.82□□□□□ -0.84
SHKBP1-206ENST00000595523 MSTNO14793 375 aa9.82□□□□□ -0.84
SHKBP1-206ENST00000595523 HNRNPCL1O60812 293 aaKnown RBP9.82□□□□□ -0.84
SHKBP1-206ENST00000595523 SS18L1O75177 396 aaPredicted RBP9.82□□□□□ -0.84
SHKBP1-206ENST00000595523 THBS1P07996 1170 aa9.82□□□□□ -0.84
SHKBP1-206ENST00000595523 VIMP08670 466 aaKnown RBP9.82□□□□□ -0.84
SHKBP1-206ENST00000595523 HNRNPCL4P0DMR1 293 aa9.82□□□□□ -0.84
SHKBP1-206ENST00000595523 TROVE2P10155 538 aaKnown RBP eCLIP9.82□□□□□ -0.84
SHKBP1-206ENST00000595523 ARAFP10398 606 aa9.82□□□□□ -0.84
SHKBP1-206ENST00000595523 SSTR2P30874 369 aa9.82□□□□□ -0.84
SHKBP1-206ENST00000595523 ACAA2P42765 397 aaKnown RBP9.82□□□□□ -0.84
SHKBP1-206ENST00000595523 ARFIP2P53365 341 aa9.82□□□□□ -0.84
SHKBP1-206ENST00000595523 CARD18P57730 90 aa9.82□□□□□ -0.84
SHKBP1-206ENST00000595523 TLE4Q04727 773 aa9.82□□□□□ -0.84
SHKBP1-206ENST00000595523 EPS8Q12929 822 aa9.82□□□□□ -0.84
SHKBP1-206ENST00000595523 SELPLGQ14242 412 aa9.82□□□□□ -0.84
SHKBP1-206ENST00000595523 ADRM1Q16186 407 aa9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms