RNA–Protein interactions for RNA: ENST00000586119.1

LIG3-207, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-207ENST00000586119 A0A1W2PR80 420 aa10.28□□□□□ -0.76
LIG3-207ENST00000586119 KLF11O14901 512 aa10.28□□□□□ -0.76
LIG3-207ENST00000586119 CD5LO43866 347 aa10.28□□□□□ -0.76
LIG3-207ENST00000586119 TMCC2O75069 709 aa10.28□□□□□ -0.76
LIG3-207ENST00000586119 H6PDO95479 791 aa10.28□□□□□ -0.76
LIG3-207ENST00000586119 CHRNGP07510 517 aa10.28□□□□□ -0.76
LIG3-207ENST00000586119 FGF4P08620 206 aa10.28□□□□□ -0.76
LIG3-207ENST00000586119 IGHV1-2P23083 117 aa10.28□□□□□ -0.76
LIG3-207ENST00000586119 EIF1P41567 113 aaKnown RBP10.28□□□□□ -0.76
LIG3-207ENST00000586119 P2RX1P51575 399 aa10.28□□□□□ -0.76
LIG3-207ENST00000586119 FOXG1P55316 489 aaPredicted RBP10.28□□□□□ -0.76
LIG3-207ENST00000586119 STX3Q13277 289 aa10.28□□□□□ -0.76
LIG3-207ENST00000586119 RNPS1Q15287 305 aaKnown RBP10.28□□□□□ -0.76
LIG3-207ENST00000586119 CHI3L2Q15782 390 aa10.28□□□□□ -0.76
LIG3-207ENST00000586119 UGT3A2Q3SY77 523 aa10.28□□□□□ -0.76
LIG3-207ENST00000586119 ATG16L1Q676U5 607 aa10.28□□□□□ -0.76
LIG3-207ENST00000586119 ZCCHC12Q6PEW1 402 aa10.28□□□□□ -0.76
LIG3-207ENST00000586119 HIPK1Q86Z02 1210 aa10.28□□□□□ -0.76
LIG3-207ENST00000586119 MISPQ8IVT2 679 aa10.28□□□□□ -0.76
LIG3-207ENST00000586119 CLEC4FQ8N1N0 589 aa10.28□□□□□ -0.76
LIG3-207ENST00000586119 MGARPQ8TDB4 240 aa10.28□□□□□ -0.76
LIG3-207ENST00000586119 ZFP90Q8TF47 636 aa10.28□□□□□ -0.76
LIG3-207ENST00000586119 NANOS1Q8WY41 292 aaKnown RBP10.28□□□□□ -0.76
LIG3-207ENST00000586119 CPNE4Q96A23 557 aaPredicted RBP10.28□□□□□ -0.76
LIG3-207ENST00000586119 INTS9Q9NV88 658 aaKnown RBP10.28□□□□□ -0.76
LIG3-207ENST00000586119 GPATCH2Q9NW75 528 aa10.28□□□□□ -0.76
LIG3-207ENST00000586119 ATP6V1HQ9UI12 483 aa10.28□□□□□ -0.76
LIG3-207ENST00000586119 KCNE5Q9UJ90 142 aa10.28□□□□□ -0.76
LIG3-207ENST00000586119 EPB41L3Q9Y2J2 1087 aaPredicted RBP10.28□□□□□ -0.76
LIG3-207ENST00000586119 DNAJC15Q9Y5T4 150 aa10.28□□□□□ -0.76
LIG3-207ENST00000586119 MALRD1Q5VYJ5 2156 aa10.28□□□□□ -0.76
LIG3-207ENST00000586119 A0A096LNT2 108 aa10.27□□□□□ -0.77
LIG3-207ENST00000586119 WDR91A4D1P6 747 aa10.27□□□□□ -0.77
LIG3-207ENST00000586119 E7EQL1 145 aa10.27□□□□□ -0.77
LIG3-207ENST00000586119 NPIPB9F8W1W9 429 aa10.27□□□□□ -0.77
LIG3-207ENST00000586119 GTPBP1O00178 669 aaKnown RBP10.27□□□□□ -0.77
LIG3-207ENST00000586119 SMAD9O15198 467 aaKnown RBP10.27□□□□□ -0.77
LIG3-207ENST00000586119 C6orf47O95873 294 aa10.27□□□□□ -0.77
LIG3-207ENST00000586119 IGHV3-9P01782 118 aa10.27□□□□□ -0.77
LIG3-207ENST00000586119 PABPC4LP0CB38 370 aaKnown RBP10.27□□□□□ -0.77
LIG3-207ENST00000586119 NTF4P34130 210 aa10.27□□□□□ -0.77
LIG3-207ENST00000586119 OR3A2P47893 321 aa10.27□□□□□ -0.77
LIG3-207ENST00000586119 CCT3P49368 545 aaKnown RBP10.27□□□□□ -0.77
LIG3-207ENST00000586119 ATP12AP54707 1039 aa10.27□□□□□ -0.77
LIG3-207ENST00000586119 CASP9P55211 416 aa10.27□□□□□ -0.77
LIG3-207ENST00000586119 ABCE1P61221 599 aaKnown RBP10.27□□□□□ -0.77
LIG3-207ENST00000586119 RPS26P62854 115 aaKnown RBP10.27□□□□□ -0.77
LIG3-207ENST00000586119 IRX1P78414 480 aaPredicted RBP10.27□□□□□ -0.77
LIG3-207ENST00000586119 SPOCK1Q08629 439 aa10.27□□□□□ -0.77
LIG3-207ENST00000586119 RASGEF1BQ0VAM2 473 aa10.27□□□□□ -0.77
LIG3-207ENST00000586119 P2RY6Q15077 328 aa10.27□□□□□ -0.77
LIG3-207ENST00000586119 QPRTQ15274 297 aa10.27□□□□□ -0.77
LIG3-207ENST00000586119 ARL13AQ5H913 290 aaPredicted RBP10.27□□□□□ -0.77
LIG3-207ENST00000586119 DCST2Q5T1A1 773 aa10.27□□□□□ -0.77
LIG3-207ENST00000586119 KANK2Q63ZY3 851 aa10.27□□□□□ -0.77
LIG3-207ENST00000586119 RNF165Q6ZSG1 346 aa10.27□□□□□ -0.77
LIG3-207ENST00000586119 KRTCAP2Q8N6L1 136 aa10.27□□□□□ -0.77
LIG3-207ENST00000586119 ZNF614Q8N883 585 aa10.27□□□□□ -0.77
LIG3-207ENST00000586119 OR5D16Q8NGK9 328 aa10.27□□□□□ -0.77
LIG3-207ENST00000586119 OR5AK3PQ8NH89 298 aa10.27□□□□□ -0.77
LIG3-207ENST00000586119 ZNF764Q96H86 408 aaPredicted RBP10.27□□□□□ -0.77
LIG3-207ENST00000586119 METTL2AQ96IZ6 378 aaKnown RBP10.27□□□□□ -0.77
LIG3-207ENST00000586119 C3orf30Q96M34 536 aa10.27□□□□□ -0.77
LIG3-207ENST00000586119 STACQ99469 402 aa10.27□□□□□ -0.77
LIG3-207ENST00000586119 SERHL2Q9H4I8 314 aa10.27□□□□□ -0.77
LIG3-207ENST00000586119 MANSC1Q9H8J5 431 aa10.27□□□□□ -0.77
LIG3-207ENST00000586119 BCO1Q9HAY6 547 aa10.27□□□□□ -0.77
LIG3-207ENST00000586119 TIGARQ9NQ88 270 aa10.27□□□□□ -0.77
LIG3-207ENST00000586119 DUSP22Q9NRW4 184 aa10.27□□□□□ -0.77
LIG3-207ENST00000586119 THAP1Q9NVV9 213 aa10.27□□□□□ -0.77
LIG3-207ENST00000586119 STAB1Q9NY15 2570 aa10.27□□□□□ -0.77
LIG3-207ENST00000586119 MXRA5Q9NR99 2828 aa10.27□□□□□ -0.77
LIG3-207ENST00000586119 ABCD4O14678 606 aa10.26□□□□□ -0.77
LIG3-207ENST00000586119 PIP5K1BO14986 540 aa10.26□□□□□ -0.77
LIG3-207ENST00000586119 SCAMP2O15127 329 aaKnown RBP10.26□□□□□ -0.77
LIG3-207ENST00000586119 FCMRO60667 390 aa10.26□□□□□ -0.77
LIG3-207ENST00000586119 PEX11AO75192 247 aa10.26□□□□□ -0.77
LIG3-207ENST00000586119 BCAS1O75363 584 aaPredicted RBP10.26□□□□□ -0.77
LIG3-207ENST00000586119 CYP7B1O75881 506 aa10.26□□□□□ -0.77
LIG3-207ENST00000586119 HSPA4LO95757 839 aa10.26□□□□□ -0.77
LIG3-207ENST00000586119 CHEK2O96017 543 aa10.26□□□□□ -0.77
LIG3-207ENST00000586119 TP53P04637 393 aaPredicted RBP10.26□□□□□ -0.77
LIG3-207ENST00000586119 ATP6V1C1P21283 382 aa10.26□□□□□ -0.77
LIG3-207ENST00000586119 BGNP21810 368 aa10.26□□□□□ -0.77
LIG3-207ENST00000586119 ELK4P28324 431 aa10.26□□□□□ -0.77
LIG3-207ENST00000586119 LCN1P31025 176 aa10.26□□□□□ -0.77
LIG3-207ENST00000586119 SLC1A6P48664 564 aa10.26□□□□□ -0.77
LIG3-207ENST00000586119 RAC3P60763 192 aa10.26□□□□□ -0.77
LIG3-207ENST00000586119 SRSF2Q01130 221 aaKnown RBP10.26□□□□□ -0.77
LIG3-207ENST00000586119 TP53BP2Q13625 1128 aa10.26□□□□□ -0.77
LIG3-207ENST00000586119 PTGR1Q14914 329 aa10.26□□□□□ -0.77
LIG3-207ENST00000586119 MLC1Q15049 377 aa10.26□□□□□ -0.77
LIG3-207ENST00000586119 PPA1Q15181 289 aa10.26□□□□□ -0.77
LIG3-207ENST00000586119 TIGD2Q4W5G0 525 aa10.26□□□□□ -0.77
LIG3-207ENST00000586119 PDZK1Q5T2W1 519 aa10.26□□□□□ -0.77
LIG3-207ENST00000586119 DNAJC14Q6Y2X3 702 aaPredicted RBP10.26□□□□□ -0.77
LIG3-207ENST00000586119 ZCCHC23Q6ZST2 131 aa10.26□□□□□ -0.77
LIG3-207ENST00000586119 Q6ZT83 130 aa10.26□□□□□ -0.77
LIG3-207ENST00000586119 DDIASQ8IXT1 998 aa10.26□□□□□ -0.77
LIG3-207ENST00000586119 AGR3Q8TD06 166 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms