RNA–Protein interactions for RNA: ENST00000569422.1

LINC00558-201, long intergenic non-protein coding RNA 558, humanhuman

TSL 1 (best) BASIC

Gene LINC00558, Length 3,163 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00558-201ENST00000569422 DDI2Q5TDH0 399 aa8.11□□□□□ -1.11
LINC00558-201ENST00000569422 ARMC6Q6NXE6 501 aa8.11□□□□□ -1.11
LINC00558-201ENST00000569422 ARL9Q6T311 187 aa8.11□□□□□ -1.11
LINC00558-201ENST00000569422 RPTNQ6XPR3 784 aa8.11□□□□□ -1.11
LINC00558-201ENST00000569422 GDPGP1Q6ZNW5 385 aa8.11□□□□□ -1.11
LINC00558-201ENST00000569422 USP53Q70EK8 1073 aa8.11□□□□□ -1.11
LINC00558-201ENST00000569422 GATSQ8NAP1 163 aa8.11□□□□□ -1.11
LINC00558-201ENST00000569422 SCARF2Q96GP6 870 aaPredicted RBP8.11□□□□□ -1.11
LINC00558-201ENST00000569422 ZNF845Q96IR2 970 aaPredicted RBP8.11□□□□□ -1.11
LINC00558-201ENST00000569422 ARHGAP9Q9BRR9 750 aa8.11□□□□□ -1.11
LINC00558-201ENST00000569422 GPR174Q9BXC1 333 aa8.11□□□□□ -1.11
LINC00558-201ENST00000569422 TPSD1Q9BZJ3 242 aa8.11□□□□□ -1.11
LINC00558-201ENST00000569422 PIGUQ9H490 435 aa8.11□□□□□ -1.11
LINC00558-201ENST00000569422 KLHL1Q9NR64 748 aa8.11□□□□□ -1.11
LINC00558-201ENST00000569422 EXOSC1Q9Y3B2 195 aaKnown RBP8.11□□□□□ -1.11
LINC00558-201ENST00000569422 CHTOPQ9Y3Y2 248 aaKnown RBP8.11□□□□□ -1.11
LINC00558-201ENST00000569422 NOX1Q9Y5S8 564 aa8.11□□□□□ -1.11
LINC00558-201ENST00000569422 CDH10Q9Y6N8 788 aa8.11□□□□□ -1.11
LINC00558-201ENST00000569422 DAPL1A0PJW8 107 aa8.11□□□□□ -1.11
LINC00558-201ENST00000569422 TRAPPC13A5PLN9 417 aa8.11□□□□□ -1.11
LINC00558-201ENST00000569422 KDM4EB2RXH2 506 aaPredicted RBP8.11□□□□□ -1.11
LINC00558-201ENST00000569422 RFPL3O75679 317 aa8.11□□□□□ -1.11
LINC00558-201ENST00000569422 GPR75O95800 540 aa8.11□□□□□ -1.11
LINC00558-201ENST00000569422 TNFP01375 233 aa8.11□□□□□ -1.11
LINC00558-201ENST00000569422 KRT8P05787 483 aa8.11□□□□□ -1.11
LINC00558-201ENST00000569422 SELLP14151 372 aa8.11□□□□□ -1.11
LINC00558-201ENST00000569422 ACVR1BP36896 505 aa8.11□□□□□ -1.11
LINC00558-201ENST00000569422 EEF1A1P68104 462 aaKnown RBP8.11□□□□□ -1.11
LINC00558-201ENST00000569422 HHEXQ03014 270 aa8.11□□□□□ -1.11
LINC00558-201ENST00000569422 DSG2Q14126 1118 aa8.11□□□□□ -1.11
LINC00558-201ENST00000569422 P2RY14Q15391 338 aa8.11□□□□□ -1.11
LINC00558-201ENST00000569422 CDONQ4KMG0 1287 aa8.11□□□□□ -1.11
LINC00558-201ENST00000569422 ZNF628Q5EBL2 1059 aa8.11□□□□□ -1.11
LINC00558-201ENST00000569422 HEPHL1Q6MZM0 1159 aa8.11□□□□□ -1.11
LINC00558-201ENST00000569422 ZNF517Q6ZMY9 492 aaPredicted RBP8.11□□□□□ -1.11
LINC00558-201ENST00000569422 OOSP2Q86WS3 158 aa8.11□□□□□ -1.11
LINC00558-201ENST00000569422 CDK20Q8IZL9 346 aa8.11□□□□□ -1.11
LINC00558-201ENST00000569422 GJD3Q8N144 294 aa8.11□□□□□ -1.11
LINC00558-201ENST00000569422 NAXEQ8NCW5 288 aa8.11□□□□□ -1.11
LINC00558-201ENST00000569422 NT5CQ8TCD5 201 aa8.11□□□□□ -1.11
LINC00558-201ENST00000569422 FGF11Q92914 225 aa8.11□□□□□ -1.11
LINC00558-201ENST00000569422 BPIFA2Q96DR5 249 aa8.11□□□□□ -1.11
LINC00558-201ENST00000569422 TM4SF19Q96DZ7 209 aa8.11□□□□□ -1.11
LINC00558-201ENST00000569422 MED30Q96HR3 178 aa8.11□□□□□ -1.11
LINC00558-201ENST00000569422 CDCA3Q99618 268 aaPredicted RBP8.11□□□□□ -1.11
LINC00558-201ENST00000569422 GAL3ST1Q99999 423 aa8.11□□□□□ -1.11
LINC00558-201ENST00000569422 PRSS27Q9BQR3 290 aa8.11□□□□□ -1.11
LINC00558-201ENST00000569422 C12orf4Q9NQ89 552 aa8.11□□□□□ -1.11
LINC00558-201ENST00000569422 SLC39A1Q9NY26 324 aa8.11□□□□□ -1.11
LINC00558-201ENST00000569422 PILRAQ9UKJ1 303 aa8.11□□□□□ -1.11
LINC00558-201ENST00000569422 C19orf53Q9UNZ5 99 aaPredicted RBP8.11□□□□□ -1.11
LINC00558-201ENST00000569422 NUP210Q8TEM1 1887 aaPredicted RBP8.11□□□□□ -1.11
LINC00558-201ENST00000569422 J3QLW9 94 aa8.1□□□□□ -1.11
LINC00558-201ENST00000569422 GABRPO00591 440 aa8.1□□□□□ -1.11
LINC00558-201ENST00000569422 PPP1R3DO95685 299 aa8.1□□□□□ -1.11
LINC00558-201ENST00000569422 THEGLP0DJG4 465 aa8.1□□□□□ -1.11
LINC00558-201ENST00000569422 ZNF19P17023 458 aa8.1□□□□□ -1.11
LINC00558-201ENST00000569422 MAZP56270 477 aaKnown RBP8.1□□□□□ -1.11
LINC00558-201ENST00000569422 RAB25P57735 213 aa8.1□□□□□ -1.11
LINC00558-201ENST00000569422 SSTP61278 116 aa8.1□□□□□ -1.11
LINC00558-201ENST00000569422 POU6F2P78424 691 aaPredicted RBP8.1□□□□□ -1.11
LINC00558-201ENST00000569422 STX4Q12846 297 aa8.1□□□□□ -1.11
LINC00558-201ENST00000569422 CEBPEQ15744 281 aa8.1□□□□□ -1.11
LINC00558-201ENST00000569422 RNASE12Q5GAN4 147 aaKnown RBP8.1□□□□□ -1.11
LINC00558-201ENST00000569422 IDNKQ5T6J7 187 aa8.1□□□□□ -1.11
LINC00558-201ENST00000569422 ARL14Q8N4G2 192 aa8.1□□□□□ -1.11
LINC00558-201ENST00000569422 TOE1Q96GM8 510 aaKnown RBP8.1□□□□□ -1.11
LINC00558-201ENST00000569422 SRRQ9GZT4 340 aa8.1□□□□□ -1.11
LINC00558-201ENST00000569422 MCOLN1Q9GZU1 580 aa8.1□□□□□ -1.11
LINC00558-201ENST00000569422 FGF20Q9NP95 211 aaPredicted RBP8.1□□□□□ -1.11
LINC00558-201ENST00000569422 SF3B6Q9Y3B4 125 aaKnown RBP8.1□□□□□ -1.11
LINC00558-201ENST00000569422 TMEM129A0AVI4 362 aa8.1□□□□□ -1.11
LINC00558-201ENST00000569422 SLC9B1P1A6NJY1 282 aa8.1□□□□□ -1.11
LINC00558-201ENST00000569422 AKAP8O43823 692 aaKnown RBP8.1□□□□□ -1.11
LINC00558-201ENST00000569422 ADAM11O75078 769 aa8.1□□□□□ -1.11
LINC00558-201ENST00000569422 IL1AP01583 271 aa8.1□□□□□ -1.11
LINC00558-201ENST00000569422 NID1P14543 1247 aa8.1□□□□□ -1.11
LINC00558-201ENST00000569422 TBXA2RP21731 343 aa8.1□□□□□ -1.11
LINC00558-201ENST00000569422 MAOBP27338 520 aa8.1□□□□□ -1.11
LINC00558-201ENST00000569422 GABRA5P31644 462 aa8.1□□□□□ -1.11
LINC00558-201ENST00000569422 RFX2P48378 723 aa8.1□□□□□ -1.11
LINC00558-201ENST00000569422 EMDP50402 254 aa8.1□□□□□ -1.11
LINC00558-201ENST00000569422 FXYD6P3P58550 94 aa8.1□□□□□ -1.11
LINC00558-201ENST00000569422 BTG2P78543 158 aa8.1□□□□□ -1.11
LINC00558-201ENST00000569422 BNC1Q01954 994 aa8.1□□□□□ -1.11
LINC00558-201ENST00000569422 DUSP8Q13202 625 aa8.1□□□□□ -1.11
LINC00558-201ENST00000569422 ZNF267Q14586 743 aaPredicted RBP8.1□□□□□ -1.11
LINC00558-201ENST00000569422 SF3B4Q15427 424 aaKnown RBP eCLIP8.1□□□□□ -1.11
LINC00558-201ENST00000569422 PRAMEF8Q5VWM4 474 aa8.1□□□□□ -1.11
LINC00558-201ENST00000569422 PRAMEF7Q5VXH5 474 aa8.1□□□□□ -1.11
LINC00558-201ENST00000569422 CNIH2Q6PI25 160 aa8.1□□□□□ -1.11
LINC00558-201ENST00000569422 BAHD1Q8TBE0 780 aaPredicted RBP8.1□□□□□ -1.11
LINC00558-201ENST00000569422 TMCO6Q96DC7 493 aa8.1□□□□□ -1.11
LINC00558-201ENST00000569422 TNFRSF13CQ96RJ3 184 aa8.1□□□□□ -1.11
LINC00558-201ENST00000569422 CCDC32Q9BV29 185 aa8.1□□□□□ -1.11
LINC00558-201ENST00000569422 ALG8Q9BVK2 526 aa8.1□□□□□ -1.11
LINC00558-201ENST00000569422 C11orf54Q9H0W9 315 aaPredicted RBP8.1□□□□□ -1.11
LINC00558-201ENST00000569422 S1PR5Q9H228 398 aa8.1□□□□□ -1.11
LINC00558-201ENST00000569422 CCDC86Q9H6F5 360 aaKnown RBP8.1□□□□□ -1.11
LINC00558-201ENST00000569422 KRCC1Q9NPI7 259 aaPredicted RBP8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms