RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 GABRB1P18505 474 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 TSPAN8P19075 237 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 DRD1P21728 446 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 ZP3P21754 424 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 BGNP21810 368 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 ACKR3P25106 362 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 SERPINA4P29622 427 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 CSKP41240 450 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 IDH2P48735 452 aaKnown RBP4.67□□□□□ -1.66
VPS35-205ENST00000563984 FMO5P49326 533 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 CYB561P49447 251 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 BLKP51451 505 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 KPNA2P52292 529 aaKnown RBP4.67□□□□□ -1.66
VPS35-205ENST00000563984 PLA2G16P53816 162 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 PNLIPRP2P54317 469 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 CDC42P60953 191 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 COPZ1P61923 177 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 HERV-K104P63124 156 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 SEMA3BQ13214 749 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 GRAPQ13588 217 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 MPPED2Q15777 294 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 RBBP7Q16576 425 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 DUSP6Q16828 381 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 ZNF699Q32M78 642 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 RFX4Q33E94 735 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 TMEM196Q5HYL7 178 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 C6orf136Q5SQH8 315 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 OR2G6Q5TZ20 316 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 MARC1Q5VT66 337 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 AWAT2Q6E213 333 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 SLC27A4Q6P1M0 643 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 LINC00299Q6ZSB3 139 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 LYG2Q86SG7 212 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 GPAT4Q86UL3 456 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 CRLF3Q8IUI8 442 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 GPC2Q8N158 579 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 PRSS35Q8N3Z0 413 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 RNF148Q8N7C7 305 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 ZNF283Q8N7M2 679 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 NRACQ8N912 160 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 FAM71CQ8NEG0 241 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 OR2M7Q8NG81 312 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 OR10W1Q8NGF6 305 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 MPLKIPQ8TAP9 179 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 RAB40AQ8WXH6 277 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 PIGBQ92521 554 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 FAM46BQ96A09 425 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 KLHL29Q96CT2 875 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 SFXN2Q96NB2 322 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 PRAP1Q96NZ9 151 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 FCRL5Q96RD9 977 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 HBEGFQ99075 208 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 ZNF184Q99676 751 aaPredicted RBP4.67□□□□□ -1.66
VPS35-205ENST00000563984 CCDC3Q9BQI4 270 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 ROPN1BQ9BZX4 212 aaPredicted RBP4.67□□□□□ -1.66
VPS35-205ENST00000563984 OR2AG1Q9H205 316 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 WDR54Q9H977 334 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 ACTR8Q9H981 624 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 NMNAT1Q9HAN9 279 aaPredicted RBP4.67□□□□□ -1.66
VPS35-205ENST00000563984 ROPN1Q9HAT0 212 aaPredicted RBP4.67□□□□□ -1.66
VPS35-205ENST00000563984 PLEKHA2Q9HB19 425 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 TMBIM4Q9HC24 238 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 LYRM4Q9HD34 91 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 EQTNQ9NQ60 294 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 PXMP2Q9NR77 195 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 VNN3Q9NY84 501 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 GSKIPQ9P0R6 139 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 HEY2Q9UBP5 337 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 SLC25A10Q9UBX3 287 aaPredicted RBP4.67□□□□□ -1.66
VPS35-205ENST00000563984 KLHL21Q9UJP4 597 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 ZNF221Q9UK13 617 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 DKKL1Q9UK85 242 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 DAPP1Q9UN19 280 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 BAIAP2Q9UQB8 552 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 PCDHB7Q9Y5E2 793 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 MMP24Q9Y5R2 645 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 PTGDR2Q9Y5Y4 395 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 SLCO1B1Q9Y6L6 691 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 SF3B1O75533 1304 aaKnown RBP eCLIP4.67□□□□□ -1.66
VPS35-205ENST00000563984 AFF2P51816 1311 aa4.67□□□□□ -1.66
VPS35-205ENST00000563984 TAF1P21675 1872 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 MYMKA6NI61 221 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 NPIPB13A6NJU9 1138 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 SDR42E2A6NKP2 422 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 HACD1B0YJ81 288 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 NPIPB4C9JG80 1138 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 TSTD3H0UI37 97 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 CDIPTO14735 213 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 ADAP1O75689 374 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 AQP8O94778 261 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 PSMG1O95456 288 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 H6PDO95479 791 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 FADS2O95864 444 aaKnown RBP4.66□□□□□ -1.66
VPS35-205ENST00000563984 CYB5R3P00387 301 aaPredicted RBP4.66□□□□□ -1.66
VPS35-205ENST00000563984 CST4P01036 141 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 GH2P01242 217 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 FGGP02679 453 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 C2P06681 752 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 METTL15P1P0C7V9 234 aa4.66□□□□□ -1.66
VPS35-205ENST00000563984 PET100P0DJ07 73 aa4.66□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms