RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 BTN2A1Q7KYR7 527 aa8.53□□□□□ -1.04
VPS39-205ENST00000562258 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.53□□□□□ -1.04
VPS39-205ENST00000562258 SLC22A16Q86VW1 577 aa8.53□□□□□ -1.04
VPS39-205ENST00000562258 FAM86B1Q8N7N1 296 aa8.53□□□□□ -1.04
VPS39-205ENST00000562258 OR7G1Q8NGA0 311 aa8.53□□□□□ -1.04
VPS39-205ENST00000562258 OR2Y1Q8NGV0 311 aa8.53□□□□□ -1.04
VPS39-205ENST00000562258 CNIH3Q8TBE1 160 aa8.53□□□□□ -1.04
VPS39-205ENST00000562258 PMM1Q92871 262 aa8.53□□□□□ -1.04
VPS39-205ENST00000562258 ZMYND19Q96E35 227 aaPredicted RBP8.53□□□□□ -1.04
VPS39-205ENST00000562258 MAELQ96JY0 434 aaKnown RBP8.53□□□□□ -1.04
VPS39-205ENST00000562258 SECISBP2Q96T21 854 aaKnown RBP8.53□□□□□ -1.04
VPS39-205ENST00000562258 EMC6Q9BV81 110 aa8.53□□□□□ -1.04
VPS39-205ENST00000562258 AKIRIN1Q9H9L7 192 aaPredicted RBP8.53□□□□□ -1.04
VPS39-205ENST00000562258 GRIP1Q9Y3R0 1128 aa8.53□□□□□ -1.04
VPS39-205ENST00000562258 PCDHGB7Q9Y5F8 929 aa8.53□□□□□ -1.04
VPS39-205ENST00000562258 PCDHGA8Q9Y5G5 932 aa8.53□□□□□ -1.04
VPS39-205ENST00000562258 KCNE3Q9Y6H6 103 aa8.53□□□□□ -1.04
VPS39-205ENST00000562258 DOCK7Q96N67 2140 aa8.53□□□□□ -1.04
VPS39-205ENST00000562258 TMED7-TICAM2A0A0A6YYA0 188 aa8.52□□□□□ -1.04
VPS39-205ENST00000562258 MPZL2O60487 215 aa8.52□□□□□ -1.04
VPS39-205ENST00000562258 TNFRSF21O75509 655 aa8.52□□□□□ -1.04
VPS39-205ENST00000562258 EDNRAP25101 427 aa8.52□□□□□ -1.04
VPS39-205ENST00000562258 PYCR1P32322 319 aa8.52□□□□□ -1.04
VPS39-205ENST00000562258 IDUAP35475 653 aa8.52□□□□□ -1.04
VPS39-205ENST00000562258 CRISP1P54107 249 aa8.52□□□□□ -1.04
VPS39-205ENST00000562258 PCBP4P57723 403 aaKnown RBP8.52□□□□□ -1.04
VPS39-205ENST00000562258 PPP3R1P63098 170 aa8.52□□□□□ -1.04
VPS39-205ENST00000562258 DUSP2Q05923 314 aa8.52□□□□□ -1.04
VPS39-205ENST00000562258 ADRM1Q16186 407 aa8.52□□□□□ -1.04
VPS39-205ENST00000562258 ATP1A1-AS1Q5TC04 95 aa8.52□□□□□ -1.04
VPS39-205ENST00000562258 SPINK14Q6IE38 97 aa8.52□□□□□ -1.04
VPS39-205ENST00000562258 LCN8Q6JVE9 175 aa8.52□□□□□ -1.04
VPS39-205ENST00000562258 NDUFAF7Q7L592 441 aa8.52□□□□□ -1.04
VPS39-205ENST00000562258 LILRA2Q8N149 483 aa8.52□□□□□ -1.04
VPS39-205ENST00000562258 DNAJC22Q8N4W6 341 aa8.52□□□□□ -1.04
VPS39-205ENST00000562258 STON2Q8WXE9 905 aa8.52□□□□□ -1.04
VPS39-205ENST00000562258 TAMM41Q96BW9 452 aa8.52□□□□□ -1.04
VPS39-205ENST00000562258 ABCB9Q9NP78 766 aa8.52□□□□□ -1.04
VPS39-205ENST00000562258 IL17BQ9UHF5 180 aa8.52□□□□□ -1.04
VPS39-205ENST00000562258 TMED7Q9Y3B3 224 aa8.52□□□□□ -1.04
VPS39-205ENST00000562258 ST14Q9Y5Y6 855 aa8.52□□□□□ -1.04
VPS39-205ENST00000562258 KDM4EB2RXH2 506 aaPredicted RBP8.52□□□□□ -1.05
VPS39-205ENST00000562258 CYB5AP00167 134 aa8.52□□□□□ -1.05
VPS39-205ENST00000562258 AQP2P41181 271 aa8.52□□□□□ -1.05
VPS39-205ENST00000562258 MAGEA8P43361 318 aa8.52□□□□□ -1.05
VPS39-205ENST00000562258 CSNK2A1P68400 391 aaPredicted RBP8.52□□□□□ -1.05
VPS39-205ENST00000562258 OR1C1Q15619 314 aa8.52□□□□□ -1.05
VPS39-205ENST00000562258 KLHL22Q53GT1 634 aa8.52□□□□□ -1.05
VPS39-205ENST00000562258 BICRALQ6AI39 1079 aa8.52□□□□□ -1.05
VPS39-205ENST00000562258 CPOQ8IVL8 374 aa8.52□□□□□ -1.05
VPS39-205ENST00000562258 TMEM151AQ8N4L1 468 aa8.52□□□□□ -1.05
VPS39-205ENST00000562258 OR10G3Q8NGC4 313 aa8.52□□□□□ -1.05
VPS39-205ENST00000562258 TTYH2Q9BSA4 534 aa8.52□□□□□ -1.05
VPS39-205ENST00000562258 DUSP22Q9NRW4 184 aa8.52□□□□□ -1.05
VPS39-205ENST00000562258 COQ3Q9NZJ6 369 aa8.52□□□□□ -1.05
VPS39-205ENST00000562258 KLF13Q9Y2Y9 288 aaPredicted RBP8.52□□□□□ -1.05
VPS39-205ENST00000562258 A0A0A6YYD5 115 aa8.52□□□□□ -1.05
VPS39-205ENST00000562258 SLC16A7O60669 478 aa8.52□□□□□ -1.05
VPS39-205ENST00000562258 H2BFMP0C1H6 154 aa8.52□□□□□ -1.05
VPS39-205ENST00000562258 MMP11P24347 488 aa8.52□□□□□ -1.05
VPS39-205ENST00000562258 GBX2P52951 348 aaPredicted RBP8.52□□□□□ -1.05
VPS39-205ENST00000562258 PTGES3Q15185 160 aaKnown RBP8.52□□□□□ -1.05
VPS39-205ENST00000562258 ZNF57Q68EA5 555 aaPredicted RBP8.52□□□□□ -1.05
VPS39-205ENST00000562258 ZER1Q7Z7L7 766 aa8.52□□□□□ -1.05
VPS39-205ENST00000562258 LIX1LQ8IVB5 337 aa8.52□□□□□ -1.05
VPS39-205ENST00000562258 OR13C2Q8NGS9 318 aa8.52□□□□□ -1.05
VPS39-205ENST00000562258 ACOT11Q8WXI4 607 aaPredicted RBP8.52□□□□□ -1.05
VPS39-205ENST00000562258 ZNF578Q96N58 590 aaPredicted RBP8.52□□□□□ -1.05
VPS39-205ENST00000562258 FRMD6Q96NE9 622 aa8.52□□□□□ -1.05
VPS39-205ENST00000562258 SEMA4CQ9C0C4 833 aa8.52□□□□□ -1.05
VPS39-205ENST00000562258 PLEK2Q9NYT0 353 aa8.52□□□□□ -1.05
VPS39-205ENST00000562258 SLC6A5Q9Y345 797 aa8.52□□□□□ -1.05
VPS39-205ENST00000562258 FASNP49327 2511 aaKnown RBP8.52□□□□□ -1.05
VPS39-205ENST00000562258 USF3Q68DE3 2245 aa8.52□□□□□ -1.05
VPS39-205ENST00000562258 HRKO00198 91 aa8.51□□□□□ -1.05
VPS39-205ENST00000562258 CELP19835 753 aa8.51□□□□□ -1.05
VPS39-205ENST00000562258 IL32P24001 234 aa8.51□□□□□ -1.05
VPS39-205ENST00000562258 POLR2IP36954 125 aaKnown RBP8.51□□□□□ -1.05
VPS39-205ENST00000562258 MAP3K8P41279 467 aa8.51□□□□□ -1.05
VPS39-205ENST00000562258 RIPK1Q13546 671 aa8.51□□□□□ -1.05
VPS39-205ENST00000562258 MFSD13AQ14CX5 517 aa8.51□□□□□ -1.05
VPS39-205ENST00000562258 Q6ZPB1 254 aaPredicted RBP8.51□□□□□ -1.05
VPS39-205ENST00000562258 AAED1Q7RTV5 226 aa8.51□□□□□ -1.05
VPS39-205ENST00000562258 MORN4Q8NDC4 146 aa8.51□□□□□ -1.05
VPS39-205ENST00000562258 MPP4Q96JB8 637 aa8.51□□□□□ -1.05
VPS39-205ENST00000562258 ULBP2Q9BZM5 246 aa8.51□□□□□ -1.05
VPS39-205ENST00000562258 ZNF768Q9H5H4 540 aaKnown RBP8.51□□□□□ -1.05
VPS39-205ENST00000562258 SLC25A37Q9NYZ2 338 aa8.51□□□□□ -1.05
VPS39-205ENST00000562258 LAMA3Q16787 3333 aa8.51□□□□□ -1.05
VPS39-205ENST00000562258 LRRN3E7EW58 273 aa8.51□□□□□ -1.05
VPS39-205ENST00000562258 HMGN4O00479 90 aa8.51□□□□□ -1.05
VPS39-205ENST00000562258 ANKRD28O15084 1053 aa8.51□□□□□ -1.05
VPS39-205ENST00000562258 AKR7A3O95154 331 aa8.51□□□□□ -1.05
VPS39-205ENST00000562258 ZNF20P17024 532 aa8.51□□□□□ -1.05
VPS39-205ENST00000562258 GPX2P18283 190 aa8.51□□□□□ -1.05
VPS39-205ENST00000562258 CLDN17P56750 224 aa8.51□□□□□ -1.05
VPS39-205ENST00000562258 TGFBR3Q03167 851 aa8.51□□□□□ -1.05
VPS39-205ENST00000562258 SSPNQ14714 243 aa8.51□□□□□ -1.05
VPS39-205ENST00000562258 WIPI1Q5MNZ9 446 aaPredicted RBP8.51□□□□□ -1.05
VPS39-205ENST00000562258 JAGN1Q8N5M9 183 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms