RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 EPB42P16452 691 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 PCSK2P16519 638 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 CPEP16870 476 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 CXCL3P19876 107 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 POU1F1P28069 291 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 AQP1P29972 269 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 KIR3DL1P43629 444 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 BLVRAP53004 296 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 CRISP1P54107 249 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 CRYZQ08257 329 aaKnown RBP7.1□□□□□ -1.27
LIMA1-216ENST00000552909 KCNAB1Q14722 419 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 RNLSQ5VYX0 342 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 MZT2AQ6P582 158 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 IGF2-ASQ6U949 168 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 ZNF621Q6ZSS3 439 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 TSEN54Q7Z6J9 526 aaKnown RBP7.1□□□□□ -1.27
LIMA1-216ENST00000552909 OR5T2Q8NGG2 359 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 OR5K2Q8NHB8 316 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 SNIP1Q8TAD8 396 aaKnown RBP7.1□□□□□ -1.27
LIMA1-216ENST00000552909 ZFPM2Q8WW38 1151 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 MED8Q96G25 268 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 IL4I1Q96RQ9 567 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 MENTQ9BUN1 341 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 RAB33BQ9H082 229 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 SRMSQ9H3Y6 488 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 MVB12BQ9H7P6 319 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 EPHA6Q9UF33 1036 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 PFDN2Q9UHV9 154 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 SCP2D1Q9UJQ7 156 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 PPT2Q9UMR5 302 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 ICKQ9UPZ9 632 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 SLC22A14Q9Y267 594 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 DLGAP4Q9Y2H0 992 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 RPL36Q9Y3U8 105 aaKnown RBP7.1□□□□□ -1.27
LIMA1-216ENST00000552909 HEBP2Q9Y5Z4 205 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 ATRXP46100 2492 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 MEIKINA0A087WXM9 373 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 A8MXK9 166 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 F8W036 122 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 ABCD4O14678 606 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 SLC19A2O60779 497 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 OR5F1O95221 314 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 LRATO95237 230 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 SLC16A8O95907 504 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 HRGP04196 525 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 CHRM5P08912 532 aaPredicted RBP7.1□□□□□ -1.27
LIMA1-216ENST00000552909 NDUFS1P28331 727 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 AVPR1BP47901 424 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 CAV3P56539 151 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 SNRPGP62308 76 aaKnown RBP7.1□□□□□ -1.27
LIMA1-216ENST00000552909 NAE1Q13564 534 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 COL9A2Q14055 689 aaPredicted RBP7.1□□□□□ -1.27
LIMA1-216ENST00000552909 ETFDHQ16134 617 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 SPDYE7PQ495Y7 208 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 CRTC2Q53ET0 693 aaPredicted RBP7.1□□□□□ -1.27
LIMA1-216ENST00000552909 NHLRC3Q5JS37 347 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 AGTRAPQ6RW13 159 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 LAPTM4BQ86VI4 370 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 LAS2Q8IYD9 372 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 C2orf73Q8N5S3 287 aaPredicted RBP7.1□□□□□ -1.27
LIMA1-216ENST00000552909 OR9A1PQ8NGU1 263 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 UBTD2Q8WUN7 234 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 TM9SF4Q92544 642 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 YIPF5Q969M3 257 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 ZDHHC12Q96GR4 267 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 IL17FQ96PD4 163 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 ATF6BQ99941 703 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 BRD7Q9NPI1 651 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 NUDT15Q9NV35 164 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 SPHK1Q9NYA1 384 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 DNAJC27Q9NZQ0 273 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 STOX2Q9P2F5 926 aaPredicted RBP7.1□□□□□ -1.27
LIMA1-216ENST00000552909 TRPS1Q9UHF7 1281 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 PPIEQ9UNP9 301 aaKnown RBP7.1□□□□□ -1.27
LIMA1-216ENST00000552909 EXO1Q9UQ84 846 aaKnown RBP7.1□□□□□ -1.27
LIMA1-216ENST00000552909 SPIN1Q9Y657 262 aaPredicted RBP7.1□□□□□ -1.27
LIMA1-216ENST00000552909 FAM208BQ5VWN6 2430 aa7.1□□□□□ -1.27
LIMA1-216ENST00000552909 ADAMTS20P59510 1910 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 A0A087WV48 116 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 TEX13CA0A0J9YWL9 993 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 PIPSLA2A3N6 862 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 GSAPA4D1B5 854 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 PLATP00750 562 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 APOC1P02654 83 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 ANKRD34CP0C6C1 535 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 FOLR1P15328 257 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 LCN1P31025 176 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 CRYBA2P53672 197 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 CTBP2P56545 445 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 VSX2P58304 361 aaPredicted RBP7.09□□□□□ -1.27
LIMA1-216ENST00000552909 RPS25P62851 125 aaKnown RBP7.09□□□□□ -1.27
LIMA1-216ENST00000552909 SELENOWP63302 87 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 ZNF91Q05481 1191 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 RBBP4Q09028 425 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 SRSF6Q13247 344 aaKnown RBP7.09□□□□□ -1.27
LIMA1-216ENST00000552909 TSTA3Q13630 321 aaPredicted RBP7.09□□□□□ -1.27
LIMA1-216ENST00000552909 IFI44LQ53G44 452 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 SPIN4Q56A73 249 aa7.09□□□□□ -1.27
LIMA1-216ENST00000552909 RGS7BPQ6MZT1 257 aaPredicted RBP7.09□□□□□ -1.27
LIMA1-216ENST00000552909 PAQR6Q6TCH4 344 aa7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms