RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 ARL8AQ96BM9 186 aa14.55□□□□□ -0.08
VPS29-207ENST00000549970 CCDC115Q96NT0 180 aa14.55□□□□□ -0.08
VPS29-207ENST00000549970 OR5B2Q96R09 309 aa14.55□□□□□ -0.08
VPS29-207ENST00000549970 WDR55Q9H6Y2 383 aaPredicted RBP14.55□□□□□ -0.08
VPS29-207ENST00000549970 AIG1Q9NVV5 245 aa14.55□□□□□ -0.08
VPS29-207ENST00000549970 THAP1Q9NVV9 213 aa14.55□□□□□ -0.08
VPS29-207ENST00000549970 BTNL2Q9UIR0 455 aa14.55□□□□□ -0.08
VPS29-207ENST00000549970 FREM1Q5H8C1 2179 aa14.55□□□□□ -0.08
VPS29-207ENST00000549970 PRR14LQ5THK1 2151 aa14.55□□□□□ -0.08
VPS29-207ENST00000549970 FLNAP21333 2647 aaKnown RBP14.55□□□□□ -0.08
VPS29-207ENST00000549970 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP14.54□□□□□ -0.08
VPS29-207ENST00000549970 HDAC3O15379 428 aa14.54□□□□□ -0.08
VPS29-207ENST00000549970 BCAS1O75363 584 aaPredicted RBP14.54□□□□□ -0.08
VPS29-207ENST00000549970 PRKD3O94806 890 aa14.54□□□□□ -0.08
VPS29-207ENST00000549970 H6PDO95479 791 aa14.54□□□□□ -0.08
VPS29-207ENST00000549970 PGCP20142 388 aa14.54□□□□□ -0.08
VPS29-207ENST00000549970 IL12AP29459 219 aa14.54□□□□□ -0.08
VPS29-207ENST00000549970 HOXC12P31275 282 aa14.54□□□□□ -0.08
VPS29-207ENST00000549970 PGM1P36871 562 aa14.54□□□□□ -0.08
VPS29-207ENST00000549970 RAC3P60763 192 aa14.54□□□□□ -0.08
VPS29-207ENST00000549970 MAGOHP61326 146 aaKnown RBP14.54□□□□□ -0.08
VPS29-207ENST00000549970 NKX6-1P78426 367 aaPredicted RBP14.54□□□□□ -0.08
VPS29-207ENST00000549970 HPCAP84074 193 aa14.54□□□□□ -0.08
VPS29-207ENST00000549970 MERTKQ12866 999 aa14.54□□□□□ -0.08
VPS29-207ENST00000549970 ACKR1Q16570 336 aa14.54□□□□□ -0.08
VPS29-207ENST00000549970 BEX5Q5H9J7 111 aa14.54□□□□□ -0.08
VPS29-207ENST00000549970 ALKBH2Q6NS38 261 aa14.54□□□□□ -0.08
VPS29-207ENST00000549970 TFAP2EQ6VUC0 442 aa14.54□□□□□ -0.08
VPS29-207ENST00000549970 SPATA19Q7Z5L4 167 aa14.54□□□□□ -0.08
VPS29-207ENST00000549970 RNF130Q86XS8 419 aa14.54□□□□□ -0.08
VPS29-207ENST00000549970 KRTAP1-3Q8IUG1 177 aa14.54□□□□□ -0.08
VPS29-207ENST00000549970 ZNF619Q8N2I2 560 aa14.54□□□□□ -0.08
VPS29-207ENST00000549970 TMEM234Q8WY98 164 aa14.54□□□□□ -0.08
VPS29-207ENST00000549970 ST8SIA1Q92185 356 aa14.54□□□□□ -0.08
VPS29-207ENST00000549970 PANX1Q96RD7 426 aa14.54□□□□□ -0.08
VPS29-207ENST00000549970 CCL19Q99731 98 aa14.54□□□□□ -0.08
VPS29-207ENST00000549970 INPP5KQ9BT40 448 aa14.54□□□□□ -0.08
VPS29-207ENST00000549970 DLL4Q9NR61 685 aa14.54□□□□□ -0.08
VPS29-207ENST00000549970 POLE3Q9NRF9 147 aa14.54□□□□□ -0.08
VPS29-207ENST00000549970 SLC35A3Q9Y2D2 325 aa14.54□□□□□ -0.08
VPS29-207ENST00000549970 GPR52Q9Y2T5 361 aa14.54□□□□□ -0.08
VPS29-207ENST00000549970 DSCAMO60469 2012 aa14.54□□□□□ -0.08
VPS29-207ENST00000549970 ARID1AO14497 2285 aa14.54□□□□□ -0.08
VPS29-207ENST00000549970 ROS1P08922 2347 aa14.54□□□□□ -0.08
VPS29-207ENST00000549970 PRAMEF27A3QJZ7 478 aa14.53□□□□□ -0.08
VPS29-207ENST00000549970 TRPC5OSA6NMA1 111 aa14.53□□□□□ -0.08
VPS29-207ENST00000549970 HMGN4O00479 90 aa14.53□□□□□ -0.08
VPS29-207ENST00000549970 KLF4O43474 513 aa14.53□□□□□ -0.08
VPS29-207ENST00000549970 DNAJA2O60884 412 aa14.53□□□□□ -0.08
VPS29-207ENST00000549970 SMPD2O60906 423 aa14.53□□□□□ -0.08
VPS29-207ENST00000549970 SNNO75324 88 aaPredicted RBP14.53□□□□□ -0.08
VPS29-207ENST00000549970 PGRP06401 933 aa14.53□□□□□ -0.08
VPS29-207ENST00000549970 YES1P07947 543 aa14.53□□□□□ -0.08
VPS29-207ENST00000549970 PSMB1P20618 241 aaKnown RBP14.53□□□□□ -0.08
VPS29-207ENST00000549970 FPR1P21462 350 aa14.53□□□□□ -0.08
VPS29-207ENST00000549970 RYKP34925 604 aa14.53□□□□□ -0.08
VPS29-207ENST00000549970 CDKN2CP42773 168 aa14.53□□□□□ -0.08
VPS29-207ENST00000549970 CHRNEQ04844 493 aa14.53□□□□□ -0.08
VPS29-207ENST00000549970 TSC22D1Q15714 1073 aa14.53□□□□□ -0.08
VPS29-207ENST00000549970 ATG16L1Q676U5 607 aa14.53□□□□□ -0.08
VPS29-207ENST00000549970 NXNQ6DKJ4 435 aa14.53□□□□□ -0.08
VPS29-207ENST00000549970 PLEKHM3Q6ZWE6 761 aa14.53□□□□□ -0.08
VPS29-207ENST00000549970 SLC43A2Q8N370 569 aa14.53□□□□□ -0.08
VPS29-207ENST00000549970 TRIML2Q8N7C3 387 aa14.53□□□□□ -0.08
VPS29-207ENST00000549970 FAM71CQ8NEG0 241 aa14.53□□□□□ -0.08
VPS29-207ENST00000549970 ZNF563Q8TA94 476 aa14.53□□□□□ -0.08
VPS29-207ENST00000549970 PIGTQ969N2 578 aa14.53□□□□□ -0.08
VPS29-207ENST00000549970 ZG16BQ96DA0 208 aa14.53□□□□□ -0.08
VPS29-207ENST00000549970 OR52E6Q96RD3 313 aa14.53□□□□□ -0.08
VPS29-207ENST00000549970 ZBTB18Q99592 522 aa14.53□□□□□ -0.08
VPS29-207ENST00000549970 SAP130Q9H0E3 1048 aa14.53□□□□□ -0.08
VPS29-207ENST00000549970 GSX1Q9H4S2 264 aaPredicted RBP14.53□□□□□ -0.08
VPS29-207ENST00000549970 GP6Q9HCN6 339 aa14.53□□□□□ -0.08
VPS29-207ENST00000549970 SERINC1Q9NRX5 453 aa14.53□□□□□ -0.08
VPS29-207ENST00000549970 GPR45Q9Y5Y3 372 aa14.53□□□□□ -0.08
VPS29-207ENST00000549970 CCDC154A6NI56 674 aa14.52□□□□□ -0.09
VPS29-207ENST00000549970 CLDN24A6NM45 220 aa14.52□□□□□ -0.09
VPS29-207ENST00000549970 GCM2O75603 506 aaPredicted RBP14.52□□□□□ -0.09
VPS29-207ENST00000549970 GSNP06396 782 aa14.52□□□□□ -0.09
VPS29-207ENST00000549970 GUSBP08236 651 aa14.52□□□□□ -0.09
VPS29-207ENST00000549970 RASGEF1BQ0VAM2 473 aa14.52□□□□□ -0.09
VPS29-207ENST00000549970 SYPL1Q16563 259 aa14.52□□□□□ -0.09
VPS29-207ENST00000549970 C20orf204Q6ZNR8 217 aa14.52□□□□□ -0.09
VPS29-207ENST00000549970 ZNF621Q6ZSS3 439 aa14.52□□□□□ -0.09
VPS29-207ENST00000549970 P3H2Q8IVL5 708 aa14.52□□□□□ -0.09
VPS29-207ENST00000549970 GABRG1Q8N1C3 465 aa14.52□□□□□ -0.09
VPS29-207ENST00000549970 ANKFN1Q8N957 763 aa14.52□□□□□ -0.09
VPS29-207ENST00000549970 STEAP2Q8NFT2 490 aa14.52□□□□□ -0.09
VPS29-207ENST00000549970 PNPT1Q8TCS8 783 aaKnown RBP14.52□□□□□ -0.09
VPS29-207ENST00000549970 OIT3Q8WWZ8 545 aa14.52□□□□□ -0.09
VPS29-207ENST00000549970 S100PBPQ96BU1 408 aa14.52□□□□□ -0.09
VPS29-207ENST00000549970 PLPPR2Q96GM1 343 aa14.52□□□□□ -0.09
VPS29-207ENST00000549970 PIP5K1AQ99755 562 aa14.52□□□□□ -0.09
VPS29-207ENST00000549970 PSD2Q9BQI7 771 aa14.52□□□□□ -0.09
VPS29-207ENST00000549970 ST6GALNAC1Q9NSC7 600 aaPredicted RBP14.52□□□□□ -0.09
VPS29-207ENST00000549970 ACER3Q9NUN7 267 aa14.52□□□□□ -0.09
VPS29-207ENST00000549970 NKIRAS1Q9NYS0 192 aa14.52□□□□□ -0.09
VPS29-207ENST00000549970 KLHL9Q9P2J3 617 aa14.52□□□□□ -0.09
VPS29-207ENST00000549970 NF1P21359 2839 aa14.52□□□□□ -0.09
VPS29-207ENST00000549970 RAI1Q7Z5J4 1906 aaPredicted RBP14.52□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms