RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 ZCCHC3Q9NUD5 404 aaKnown RBP15.66■□□□□ 0.1
CLSTN3-214ENST00000542663 DYSFO75923 2080 aa15.66■□□□□ 0.1
CLSTN3-214ENST00000542663 VWC2LB2RUY7 222 aa15.65■□□□□ 0.1
CLSTN3-214ENST00000542663 H3BQF6 201 aa15.65■□□□□ 0.1
CLSTN3-214ENST00000542663 CRCPO75575 148 aa15.65■□□□□ 0.1
CLSTN3-214ENST00000542663 GSTA1P08263 222 aa15.65■□□□□ 0.1
CLSTN3-214ENST00000542663 UROSP10746 265 aa15.65■□□□□ 0.1
CLSTN3-214ENST00000542663 ATP6V1C1P21283 382 aa15.65■□□□□ 0.1
CLSTN3-214ENST00000542663 NTF4P34130 210 aa15.65■□□□□ 0.1
CLSTN3-214ENST00000542663 EFNA4P52798 201 aa15.65■□□□□ 0.1
CLSTN3-214ENST00000542663 ATP12AP54707 1039 aa15.65■□□□□ 0.1
CLSTN3-214ENST00000542663 FOXG1P55316 489 aaPredicted RBP15.65■□□□□ 0.1
CLSTN3-214ENST00000542663 CHRNEQ04844 493 aa15.65■□□□□ 0.1
CLSTN3-214ENST00000542663 MLC1Q15049 377 aa15.65■□□□□ 0.1
CLSTN3-214ENST00000542663 QPRTQ15274 297 aa15.65■□□□□ 0.1
CLSTN3-214ENST00000542663 RFTN2Q52LD8 501 aaPredicted RBP15.65■□□□□ 0.1
CLSTN3-214ENST00000542663 FBXW9Q5XUX1 488 aa15.65■□□□□ 0.1
CLSTN3-214ENST00000542663 ABLIM2Q6H8Q1 611 aa15.65■□□□□ 0.1
CLSTN3-214ENST00000542663 ZNF544Q6NX49 715 aa15.65■□□□□ 0.1
CLSTN3-214ENST00000542663 C3orf33Q6P1S2 294 aa15.65■□□□□ 0.1
CLSTN3-214ENST00000542663 C17orf53Q8N3J3 647 aaPredicted RBP15.65■□□□□ 0.1
CLSTN3-214ENST00000542663 RFWD2Q8NHY2 731 aa15.65■□□□□ 0.1
CLSTN3-214ENST00000542663 MZB1Q8WU39 189 aa15.65■□□□□ 0.1
CLSTN3-214ENST00000542663 IFT81Q8WYA0 676 aa15.65■□□□□ 0.1
CLSTN3-214ENST00000542663 CCDC126Q96EE4 140 aa15.65■□□□□ 0.1
CLSTN3-214ENST00000542663 CHMP6Q96FZ7 201 aa15.65■□□□□ 0.1
CLSTN3-214ENST00000542663 OR5B2Q96R09 309 aa15.65■□□□□ 0.1
CLSTN3-214ENST00000542663 QRSL1Q9H0R6 528 aaKnown RBP15.65■□□□□ 0.1
CLSTN3-214ENST00000542663 CHODLQ9H9P2 273 aa15.65■□□□□ 0.1
CLSTN3-214ENST00000542663 IGKV3D-15A0A087WSY6 115 aa15.64■□□□□ 0.09
CLSTN3-214ENST00000542663 ZNF716A6NP11 495 aa15.64■□□□□ 0.09
CLSTN3-214ENST00000542663 H3BNH8 94 aa15.64■□□□□ 0.09
CLSTN3-214ENST00000542663 GTPBP1O00178 669 aaKnown RBP15.64■□□□□ 0.09
CLSTN3-214ENST00000542663 SLC28A1O00337 649 aa15.64■□□□□ 0.09
CLSTN3-214ENST00000542663 CSF3P09919 207 aa15.64■□□□□ 0.09
CLSTN3-214ENST00000542663 MYL2P10916 166 aa15.64■□□□□ 0.09
CLSTN3-214ENST00000542663 GZMKP49863 264 aa15.64■□□□□ 0.09
CLSTN3-214ENST00000542663 DIO1P49895 249 aa15.64■□□□□ 0.09
CLSTN3-214ENST00000542663 TIGD2Q4W5G0 525 aa15.64■□□□□ 0.09
CLSTN3-214ENST00000542663 FAM166AQ6J272 317 aa15.64■□□□□ 0.09
CLSTN3-214ENST00000542663 KLHL17Q6TDP4 642 aa15.64■□□□□ 0.09
CLSTN3-214ENST00000542663 OR5W2Q8NH69 310 aa15.64■□□□□ 0.09
CLSTN3-214ENST00000542663 ACMSDQ8TDX5 336 aa15.64■□□□□ 0.09
CLSTN3-214ENST00000542663 MSI2Q96DH6 328 aaKnown RBP15.64■□□□□ 0.09
CLSTN3-214ENST00000542663 INPP5KQ9BT40 448 aa15.64■□□□□ 0.09
CLSTN3-214ENST00000542663 PRR14Q9BWN1 585 aa15.64■□□□□ 0.09
CLSTN3-214ENST00000542663 ACTRT3Q9BYD9 372 aa15.64■□□□□ 0.09
CLSTN3-214ENST00000542663 TUBB1Q9H4B7 451 aa15.64■□□□□ 0.09
CLSTN3-214ENST00000542663 GPATCH2Q9NW75 528 aa15.64■□□□□ 0.09
CLSTN3-214ENST00000542663 DTNAQ9Y4J8 743 aa15.64■□□□□ 0.09
CLSTN3-214ENST00000542663 CIB4A0PJX0 185 aa15.63■□□□□ 0.09
CLSTN3-214ENST00000542663 M0R1B8 84 aa15.63■□□□□ 0.09
CLSTN3-214ENST00000542663 ZNF264O43296 627 aa15.63■□□□□ 0.09
CLSTN3-214ENST00000542663 DNAJA2O60884 412 aa15.63■□□□□ 0.09
CLSTN3-214ENST00000542663 ABHD2P08910 425 aa15.63■□□□□ 0.09
CLSTN3-214ENST00000542663 NAA20P61599 178 aa15.63■□□□□ 0.09
CLSTN3-214ENST00000542663 RPL38P63173 70 aaKnown RBP15.63■□□□□ 0.09
CLSTN3-214ENST00000542663 CKAP4Q07065 602 aaKnown RBP15.63■□□□□ 0.09
CLSTN3-214ENST00000542663 GABRA6Q16445 453 aa15.63■□□□□ 0.09
CLSTN3-214ENST00000542663 UBE2J2Q8N2K1 259 aa15.63■□□□□ 0.09
CLSTN3-214ENST00000542663 TMCO5AQ8N6Q1 288 aa15.63■□□□□ 0.09
CLSTN3-214ENST00000542663 ZNF614Q8N883 585 aa15.63■□□□□ 0.09
CLSTN3-214ENST00000542663 TOR1AIP2Q8NFQ8 470 aa15.63■□□□□ 0.09
CLSTN3-214ENST00000542663 MTERF3Q96E29 417 aa15.63■□□□□ 0.09
CLSTN3-214ENST00000542663 MUS81Q96NY9 551 aa15.63■□□□□ 0.09
CLSTN3-214ENST00000542663 C1QTNF6Q9BXI9 259 aa15.63■□□□□ 0.09
CLSTN3-214ENST00000542663 KCNS2Q9ULS6 477 aa15.63■□□□□ 0.09
CLSTN3-214ENST00000542663 CCT8L1PA6NM43 557 aa15.62■□□□□ 0.09
CLSTN3-214ENST00000542663 LSM1O15116 133 aaKnown RBP15.62■□□□□ 0.09
CLSTN3-214ENST00000542663 EIF4E2O60573 245 aaKnown RBP15.62■□□□□ 0.09
CLSTN3-214ENST00000542663 PROCP04070 461 aa15.62■□□□□ 0.09
CLSTN3-214ENST00000542663 ITGA5P08648 1049 aa15.62■□□□□ 0.09
CLSTN3-214ENST00000542663 UBL4AP11441 157 aa15.62■□□□□ 0.09
CLSTN3-214ENST00000542663 CCR4P51679 360 aa15.62■□□□□ 0.09
CLSTN3-214ENST00000542663 DNAJB13P59910 316 aa15.62■□□□□ 0.09
CLSTN3-214ENST00000542663 SLC25A3Q00325 362 aa15.62■□□□□ 0.09
CLSTN3-214ENST00000542663 SKP2Q13309 424 aa15.62■□□□□ 0.09
CLSTN3-214ENST00000542663 CBFBQ13951 182 aa15.62■□□□□ 0.09
CLSTN3-214ENST00000542663 GGTLC2Q14390 218 aa15.62■□□□□ 0.09
CLSTN3-214ENST00000542663 PDK3Q15120 406 aa15.62■□□□□ 0.09
CLSTN3-214ENST00000542663 PDZK1Q5T2W1 519 aa15.62■□□□□ 0.09
CLSTN3-214ENST00000542663 RNF165Q6ZSG1 346 aa15.62■□□□□ 0.09
CLSTN3-214ENST00000542663 TMPPEQ6ZT21 453 aa15.62■□□□□ 0.09
CLSTN3-214ENST00000542663 WDR31Q8NA23 367 aa15.62■□□□□ 0.09
CLSTN3-214ENST00000542663 NOA1Q8NC60 698 aaKnown RBP15.62■□□□□ 0.09
CLSTN3-214ENST00000542663 OR7A2PQ8NGA2 310 aa15.62■□□□□ 0.09
CLSTN3-214ENST00000542663 PSMA8Q8TAA3 256 aa15.62■□□□□ 0.09
CLSTN3-214ENST00000542663 ADAMTS15Q8TE58 950 aa15.62■□□□□ 0.09
CLSTN3-214ENST00000542663 APH1AQ96BI3 265 aa15.62■□□□□ 0.09
CLSTN3-214ENST00000542663 THUMPD3Q9BV44 507 aaKnown RBP15.62■□□□□ 0.09
CLSTN3-214ENST00000542663 TAS2R16Q9NYV7 291 aa15.62■□□□□ 0.09
CLSTN3-214ENST00000542663 MALT1Q9UDY8 824 aa15.62■□□□□ 0.09
CLSTN3-214ENST00000542663 DCDC2Q9UHG0 476 aa15.62■□□□□ 0.09
CLSTN3-214ENST00000542663 ATP6V1HQ9UI12 483 aa15.62■□□□□ 0.09
CLSTN3-214ENST00000542663 KCNE5Q9UJ90 142 aa15.62■□□□□ 0.09
CLSTN3-214ENST00000542663 NOSIPQ9Y314 301 aaKnown RBP15.62■□□□□ 0.09
CLSTN3-214ENST00000542663 TRAF6Q9Y4K3 522 aa15.62■□□□□ 0.09
CLSTN3-214ENST00000542663 LOC100289279A0A1B0GTE1 492 aa15.61■□□□□ 0.09
CLSTN3-214ENST00000542663 A0A1W2PPM1 405 aa15.61■□□□□ 0.09
CLSTN3-214ENST00000542663 SULT2B1O00204 365 aa15.61■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms