RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 TSEN54Q7Z6J9 526 aaKnown RBP11.76□□□□□ -0.53
CCDC42-202ENST00000539522 RBM45Q8IUH3 476 aaKnown RBP11.76□□□□□ -0.53
CCDC42-202ENST00000539522 MISPQ8IVT2 679 aa11.76□□□□□ -0.53
CCDC42-202ENST00000539522 PEX5LQ8IYB4 626 aa11.76□□□□□ -0.53
CCDC42-202ENST00000539522 PQLC1Q8N2U9 271 aa11.76□□□□□ -0.53
CCDC42-202ENST00000539522 OR10Q1Q8NGQ4 319 aa11.76□□□□□ -0.53
CCDC42-202ENST00000539522 LZICQ8WZA0 190 aa11.76□□□□□ -0.53
CCDC42-202ENST00000539522 ZNF607Q96SK3 696 aa11.76□□□□□ -0.53
CCDC42-202ENST00000539522 SEPHS2Q99611 448 aa11.76□□□□□ -0.53
CCDC42-202ENST00000539522 SPATA5L1Q9BVQ7 753 aa11.76□□□□□ -0.53
CCDC42-202ENST00000539522 CHID1Q9BWS9 393 aa11.76□□□□□ -0.53
CCDC42-202ENST00000539522 EXOSC3Q9NQT5 275 aaKnown RBP11.76□□□□□ -0.53
CCDC42-202ENST00000539522 ST6GALNAC1Q9NSC7 600 aaPredicted RBP11.76□□□□□ -0.53
CCDC42-202ENST00000539522 ZNF835Q9Y2P0 537 aa11.76□□□□□ -0.53
CCDC42-202ENST00000539522 FLNCQ14315 2725 aa11.76□□□□□ -0.53
CCDC42-202ENST00000539522 ZGRF1Q86YA3 2104 aa11.75□□□□□ -0.53
CCDC42-202ENST00000539522 SVILO95425 2214 aa11.75□□□□□ -0.53
CCDC42-202ENST00000539522 OR2M5A3KFT3 312 aa11.75□□□□□ -0.53
CCDC42-202ENST00000539522 ZNF682O95780 498 aa11.75□□□□□ -0.53
CCDC42-202ENST00000539522 HPGDP15428 266 aa11.75□□□□□ -0.53
CCDC42-202ENST00000539522 PRKCAP17252 672 aa11.75□□□□□ -0.53
CCDC42-202ENST00000539522 TNFRSF1BP20333 461 aa11.75□□□□□ -0.53
CCDC42-202ENST00000539522 FASP25445 335 aa11.75□□□□□ -0.53
CCDC42-202ENST00000539522 HTR2AP28223 471 aa11.75□□□□□ -0.53
CCDC42-202ENST00000539522 SHC1P29353 583 aa11.75□□□□□ -0.53
CCDC42-202ENST00000539522 CLK3P49761 638 aaKnown RBP11.75□□□□□ -0.53
CCDC42-202ENST00000539522 EPS8Q12929 822 aa11.75□□□□□ -0.53
CCDC42-202ENST00000539522 FOXF1Q12946 379 aa11.75□□□□□ -0.53
CCDC42-202ENST00000539522 LIN52Q52LA3 116 aa11.75□□□□□ -0.53
CCDC42-202ENST00000539522 LRRC23Q53EV4 343 aaPredicted RBP11.75□□□□□ -0.53
CCDC42-202ENST00000539522 CYBRD1Q53TN4 286 aa11.75□□□□□ -0.53
CCDC42-202ENST00000539522 SLC25A53Q5H9E4 307 aa11.75□□□□□ -0.53
CCDC42-202ENST00000539522 NHSL2Q5HYW2 709 aa11.75□□□□□ -0.53
CCDC42-202ENST00000539522 FKBP9P1Q75LS8 142 aa11.75□□□□□ -0.53
CCDC42-202ENST00000539522 KRT73Q86Y46 540 aa11.75□□□□□ -0.53
CCDC42-202ENST00000539522 CMIPQ8IY22 773 aa11.75□□□□□ -0.53
CCDC42-202ENST00000539522 FAM86B1Q8N7N1 296 aa11.75□□□□□ -0.53
CCDC42-202ENST00000539522 ST6GALNAC3Q8NDV1 305 aa11.75□□□□□ -0.53
CCDC42-202ENST00000539522 OR4K17Q8NGC6 315 aa11.75□□□□□ -0.53
CCDC42-202ENST00000539522 OR5W2Q8NH69 310 aa11.75□□□□□ -0.53
CCDC42-202ENST00000539522 NEIL3Q8TAT5 605 aa11.75□□□□□ -0.53
CCDC42-202ENST00000539522 RASSF5Q8WWW0 418 aa11.75□□□□□ -0.53
CCDC42-202ENST00000539522 ARHGDIGQ99819 225 aa11.75□□□□□ -0.53
CCDC42-202ENST00000539522 SDHAF3Q9NRP4 125 aa11.75□□□□□ -0.53
CCDC42-202ENST00000539522 TAS2R10Q9NYW0 307 aa11.75□□□□□ -0.53
CCDC42-202ENST00000539522 VDAC3Q9Y277 283 aa11.75□□□□□ -0.53
CCDC42-202ENST00000539522 SLC35A3Q9Y2D2 325 aa11.75□□□□□ -0.53
CCDC42-202ENST00000539522 RPH3AQ9Y2J0 694 aaPredicted RBP11.75□□□□□ -0.53
CCDC42-202ENST00000539522 GTF3C1Q12789 2109 aa11.75□□□□□ -0.53
CCDC42-202ENST00000539522 TRGV5A0A0B4J1U4 118 aa11.74□□□□□ -0.53
CCDC42-202ENST00000539522 C7orf72A4D263 438 aa11.74□□□□□ -0.53
CCDC42-202ENST00000539522 H0YC42 278 aa11.74□□□□□ -0.53
CCDC42-202ENST00000539522 M0R3H8 397 aa11.74□□□□□ -0.53
CCDC42-202ENST00000539522 ACOT7O00154 380 aa11.74□□□□□ -0.53
CCDC42-202ENST00000539522 GTPBP1O00178 669 aaKnown RBP11.74□□□□□ -0.53
CCDC42-202ENST00000539522 AQP7O14520 342 aa11.74□□□□□ -0.53
CCDC42-202ENST00000539522 SUSD5O60279 629 aa11.74□□□□□ -0.53
CCDC42-202ENST00000539522 TRAPPC6AO75865 159 aa11.74□□□□□ -0.53
CCDC42-202ENST00000539522 LGI1O95970 557 aa11.74□□□□□ -0.53
CCDC42-202ENST00000539522 THY1P04216 161 aa11.74□□□□□ -0.53
CCDC42-202ENST00000539522 BMP7P18075 431 aa11.74□□□□□ -0.53
CCDC42-202ENST00000539522 HK1P19367 917 aa11.74□□□□□ -0.53
CCDC42-202ENST00000539522 MSX1P28360 303 aa11.74□□□□□ -0.53
CCDC42-202ENST00000539522 STARP49675 285 aa11.74□□□□□ -0.53
CCDC42-202ENST00000539522 LHX2P50458 406 aa11.74□□□□□ -0.53
CCDC42-202ENST00000539522 TPD52P55327 224 aaPredicted RBP11.74□□□□□ -0.53
CCDC42-202ENST00000539522 SUMO3P55854 103 aaPredicted RBP11.74□□□□□ -0.53
CCDC42-202ENST00000539522 QPRTQ15274 297 aa11.74□□□□□ -0.53
CCDC42-202ENST00000539522 C3AR1Q16581 482 aa11.74□□□□□ -0.53
CCDC42-202ENST00000539522 NRF1Q16656 503 aa11.74□□□□□ -0.53
CCDC42-202ENST00000539522 VASNQ6EMK4 673 aa11.74□□□□□ -0.53
CCDC42-202ENST00000539522 ENPP6Q6UWR7 440 aa11.74□□□□□ -0.53
CCDC42-202ENST00000539522 ARMC8Q8IUR7 673 aa11.74□□□□□ -0.53
CCDC42-202ENST00000539522 TOR1AIP2Q8NFQ8 470 aa11.74□□□□□ -0.53
CCDC42-202ENST00000539522 SLC47A1Q96FL8 570 aa11.74□□□□□ -0.53
CCDC42-202ENST00000539522 PKP2Q99959 881 aa11.74□□□□□ -0.53
CCDC42-202ENST00000539522 PINK1Q9BXM7 581 aa11.74□□□□□ -0.53
CCDC42-202ENST00000539522 AGPAT4Q9NRZ5 378 aa11.74□□□□□ -0.53
CCDC42-202ENST00000539522 SEC14L3Q9UDX4 400 aa11.74□□□□□ -0.53
CCDC42-202ENST00000539522 IFT52Q9Y366 437 aa11.74□□□□□ -0.53
CCDC42-202ENST00000539522 ZNF337Q9Y3M9 751 aa11.74□□□□□ -0.53
CCDC42-202ENST00000539522 TNFSF12-TNFSF13A0A0A6YY99 330 aa11.73□□□□□ -0.53
CCDC42-202ENST00000539522 NBASA2RRP1 2371 aa11.73□□□□□ -0.53
CCDC42-202ENST00000539522 H3BNH8 94 aa11.73□□□□□ -0.53
CCDC42-202ENST00000539522 FAAHO00519 579 aa11.73□□□□□ -0.53
CCDC42-202ENST00000539522 CASQ2O14958 399 aaPredicted RBP11.73□□□□□ -0.53
CCDC42-202ENST00000539522 HCN1O60741 890 aa11.73□□□□□ -0.53
CCDC42-202ENST00000539522 TIPRLO75663 272 aa11.73□□□□□ -0.53
CCDC42-202ENST00000539522 CYP7B1O75881 506 aa11.73□□□□□ -0.53
CCDC42-202ENST00000539522 LYPD3O95274 346 aa11.73□□□□□ -0.53
CCDC42-202ENST00000539522 FESP07332 822 aa11.73□□□□□ -0.53
CCDC42-202ENST00000539522 PLA2G2AP14555 144 aa11.73□□□□□ -0.53
CCDC42-202ENST00000539522 GNLYP22749 145 aa11.73□□□□□ -0.53
CCDC42-202ENST00000539522 RYKP34925 604 aa11.73□□□□□ -0.53
CCDC42-202ENST00000539522 PTDSS1P48651 473 aaKnown RBP11.73□□□□□ -0.53
CCDC42-202ENST00000539522 SUCLG1P53597 346 aaKnown RBP11.73□□□□□ -0.53
CCDC42-202ENST00000539522 CLDN18P56856 261 aa11.73□□□□□ -0.53
CCDC42-202ENST00000539522 SESN3P58005 492 aa11.73□□□□□ -0.53
CCDC42-202ENST00000539522 C19orf57Q0VDD7 668 aa11.73□□□□□ -0.53
CCDC42-202ENST00000539522 GANABQ14697 944 aaKnown RBP11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms