RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 MSLNQ13421 630 aaPredicted RBP3.19□□□□□ -1.9
CD44-235ENST00000532339 GK2Q14410 553 aaPredicted RBP3.19□□□□□ -1.9
CD44-235ENST00000532339 INAQ16352 499 aa3.19□□□□□ -1.9
CD44-235ENST00000532339 VAX1Q5SQQ9 334 aa3.19□□□□□ -1.9
CD44-235ENST00000532339 PIP5KL1Q5T9C9 394 aa3.19□□□□□ -1.9
CD44-235ENST00000532339 LCN1P1Q5VSP4 162 aa3.19□□□□□ -1.9
CD44-235ENST00000532339 SEL1L3Q68CR1 1132 aa3.19□□□□□ -1.9
CD44-235ENST00000532339 DHRS11Q6UWP2 260 aa3.19□□□□□ -1.9
CD44-235ENST00000532339 B3GLCTQ6Y288 498 aa3.19□□□□□ -1.9
CD44-235ENST00000532339 LEKR1Q6ZMV7 388 aa3.19□□□□□ -1.9
CD44-235ENST00000532339 MACC1Q6ZN28 852 aa3.19□□□□□ -1.9
CD44-235ENST00000532339 Q6ZSR9 355 aa3.19□□□□□ -1.9
CD44-235ENST00000532339 PAQR7Q86WK9 346 aa3.19□□□□□ -1.9
CD44-235ENST00000532339 ITPRIPQ8IWB1 547 aa3.19□□□□□ -1.9
CD44-235ENST00000532339 MARVELD2Q8N4S9 558 aa3.19□□□□□ -1.9
CD44-235ENST00000532339 TMEM99Q8N816 258 aa3.19□□□□□ -1.9
CD44-235ENST00000532339 ZNF557Q8N988 423 aaPredicted RBP3.19□□□□□ -1.9
CD44-235ENST00000532339 TMEM178AQ8NBL3 297 aa3.19□□□□□ -1.9
CD44-235ENST00000532339 DENND6BQ8NEG7 585 aa3.19□□□□□ -1.9
CD44-235ENST00000532339 NEK11Q8NG66 645 aa3.19□□□□□ -1.9
CD44-235ENST00000532339 LILRB4Q8NHJ6 448 aa3.19□□□□□ -1.9
CD44-235ENST00000532339 ZNRF4Q8WWF5 429 aa3.19□□□□□ -1.9
CD44-235ENST00000532339 CFAP36Q96G28 342 aa3.19□□□□□ -1.9
CD44-235ENST00000532339 C10orf90Q96M02 699 aa3.19□□□□□ -1.9
CD44-235ENST00000532339 ZNF560Q96MR9 790 aa3.19□□□□□ -1.9
CD44-235ENST00000532339 RUNDC3BQ96NL0 473 aa3.19□□□□□ -1.9
CD44-235ENST00000532339 BEX2Q9BXY8 128 aa3.19□□□□□ -1.9
CD44-235ENST00000532339 FGFBP2Q9BYJ0 223 aa3.19□□□□□ -1.9
CD44-235ENST00000532339 SLC17A9Q9BYT1 436 aa3.19□□□□□ -1.9
CD44-235ENST00000532339 PLEKHF2Q9H8W4 249 aa3.19□□□□□ -1.9
CD44-235ENST00000532339 KCNMB3Q9NPA1 279 aa3.19□□□□□ -1.9
CD44-235ENST00000532339 IL37Q9NZH6 218 aa3.19□□□□□ -1.9
CD44-235ENST00000532339 TMEM9Q9P0T7 183 aa3.19□□□□□ -1.9
CD44-235ENST00000532339 TRIM10Q9UDY6 481 aa3.19□□□□□ -1.9
CD44-235ENST00000532339 C19orf25Q9UFG5 118 aaPredicted RBP3.19□□□□□ -1.9
CD44-235ENST00000532339 ASIC3Q9UHC3 531 aa3.19□□□□□ -1.9
CD44-235ENST00000532339 PSORS1C1Q9UIG5 152 aa3.19□□□□□ -1.9
CD44-235ENST00000532339 FBXL4Q9UKA2 621 aa3.19□□□□□ -1.9
CD44-235ENST00000532339 ERVW-1Q9UQF0 538 aa3.19□□□□□ -1.9
CD44-235ENST00000532339 FARSAQ9Y285 508 aaKnown RBP3.19□□□□□ -1.9
CD44-235ENST00000532339 ZNF835Q9Y2P0 537 aa3.19□□□□□ -1.9
CD44-235ENST00000532339 ARID1AO14497 2285 aa3.19□□□□□ -1.9
CD44-235ENST00000532339 ABCA1O95477 2261 aa3.19□□□□□ -1.9
CD44-235ENST00000532339 ABCA13Q86UQ4 5058 aa3.18□□□□□ -1.9
CD44-235ENST00000532339 A0A087WUV0 522 aaPredicted RBP3.18□□□□□ -1.9
CD44-235ENST00000532339 IGHV1OR21-1A0A087WYE8 117 aa3.18□□□□□ -1.9
CD44-235ENST00000532339 RNF103-CHMP3A0A140T963 221 aa3.18□□□□□ -1.9
CD44-235ENST00000532339 NKX2-6A6NCS4 301 aa3.18□□□□□ -1.9
CD44-235ENST00000532339 RNF103O00237 685 aa3.18□□□□□ -1.9
CD44-235ENST00000532339 KLF11O14901 512 aa3.18□□□□□ -1.9
CD44-235ENST00000532339 EPHB6O15197 1021 aa3.18□□□□□ -1.9
CD44-235ENST00000532339 CLDN3O15551 220 aa3.18□□□□□ -1.9
CD44-235ENST00000532339 PRPSAP2O60256 369 aa3.18□□□□□ -1.9
CD44-235ENST00000532339 HUS1O60921 280 aa3.18□□□□□ -1.9
CD44-235ENST00000532339 CLN5O75503 358 aa3.18□□□□□ -1.9
CD44-235ENST00000532339 TDP2O95551 362 aa3.18□□□□□ -1.9
CD44-235ENST00000532339 SLC4A1P02730 911 aa3.18□□□□□ -1.9
CD44-235ENST00000532339 GATA1P15976 413 aaPredicted RBP3.18□□□□□ -1.9
CD44-235ENST00000532339 MAPK3P27361 379 aaPredicted RBP3.18□□□□□ -1.9
CD44-235ENST00000532339 GNA11P29992 359 aa3.18□□□□□ -1.9
CD44-235ENST00000532339 PDK1Q15118 436 aa3.18□□□□□ -1.9
CD44-235ENST00000532339 KYAT1Q16773 422 aa3.18□□□□□ -1.9
CD44-235ENST00000532339 NKAIN2Q5VXU1 208 aa3.18□□□□□ -1.9
CD44-235ENST00000532339 SLC25A47Q6Q0C1 308 aa3.18□□□□□ -1.9
CD44-235ENST00000532339 IGFL2Q6UWQ7 119 aa3.18□□□□□ -1.9
CD44-235ENST00000532339 Q6ZPB1 254 aaPredicted RBP3.18□□□□□ -1.9
CD44-235ENST00000532339 BTN2A1Q7KYR7 527 aa3.18□□□□□ -1.9
CD44-235ENST00000532339 C17orf82Q86X59 251 aaPredicted RBP3.18□□□□□ -1.9
CD44-235ENST00000532339 CD302Q8IX05 232 aa3.18□□□□□ -1.9
CD44-235ENST00000532339 FAM89BQ8N5H3 189 aa3.18□□□□□ -1.9
CD44-235ENST00000532339 KIAA1524Q8TCG1 905 aa3.18□□□□□ -1.9
CD44-235ENST00000532339 CCDC12Q8WUD4 166 aaPredicted RBP3.18□□□□□ -1.9
CD44-235ENST00000532339 OR8D1Q8WZ84 308 aa3.18□□□□□ -1.9
CD44-235ENST00000532339 DYRK2Q92630 601 aa3.18□□□□□ -1.9
CD44-235ENST00000532339 SLCO4A1Q96BD0 722 aa3.18□□□□□ -1.9
CD44-235ENST00000532339 PCED1BQ96HM7 432 aa3.18□□□□□ -1.9
CD44-235ENST00000532339 MAGED4Q96JG8 741 aa3.18□□□□□ -1.9
CD44-235ENST00000532339 IFT74Q96LB3 600 aa3.18□□□□□ -1.9
CD44-235ENST00000532339 NEDD4LQ96PU5 975 aa3.18□□□□□ -1.9
CD44-235ENST00000532339 TAAR6Q96RI8 345 aa3.18□□□□□ -1.9
CD44-235ENST00000532339 NAP1L3Q99457 506 aaPredicted RBP3.18□□□□□ -1.9
CD44-235ENST00000532339 KLF6Q99612 283 aaPredicted RBP3.18□□□□□ -1.9
CD44-235ENST00000532339 LPAR4Q99677 370 aa3.18□□□□□ -1.9
CD44-235ENST00000532339 HSD17B14Q9BPX1 270 aa3.18□□□□□ -1.9
CD44-235ENST00000532339 NTMT1Q9BV86 223 aa3.18□□□□□ -1.9
CD44-235ENST00000532339 ELOVL4Q9GZR5 314 aa3.18□□□□□ -1.9
CD44-235ENST00000532339 WWTR1Q9GZV5 400 aa3.18□□□□□ -1.9
CD44-235ENST00000532339 C1orf21Q9H246 121 aa3.18□□□□□ -1.9
CD44-235ENST00000532339 HSD3B7Q9H2F3 369 aa3.18□□□□□ -1.9
CD44-235ENST00000532339 DPEP2Q9H4A9 486 aa3.18□□□□□ -1.9
CD44-235ENST00000532339 ATP13A3Q9H7F0 1226 aa3.18□□□□□ -1.9
CD44-235ENST00000532339 SYTL2Q9HCH5 934 aa3.18□□□□□ -1.9
CD44-235ENST00000532339 RPS10P5Q9NQ39 176 aa3.18□□□□□ -1.9
CD44-235ENST00000532339 EXOC1Q9NV70 894 aa3.18□□□□□ -1.9
CD44-235ENST00000532339 PANK4Q9NVE7 773 aa3.18□□□□□ -1.9
CD44-235ENST00000532339 UBQLN2Q9UHD9 624 aa3.18□□□□□ -1.9
CD44-235ENST00000532339 LNPEPQ9UIQ6 1025 aa3.18□□□□□ -1.9
CD44-235ENST00000532339 PRDM4Q9UKN5 801 aa3.18□□□□□ -1.9
CD44-235ENST00000532339 ELF5Q9UKW6 265 aaPredicted RBP3.18□□□□□ -1.9
CD44-235ENST00000532339 CDH9Q9ULB4 789 aa3.18□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 97.8 ms