RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 PCDHGB6Q9Y5F9 930 aa6.76□□□□□ -1.33
CD44-228ENST00000528455 PCDHGA9Q9Y5G4 932 aaKnown RBP6.76□□□□□ -1.33
CD44-228ENST00000528455 CPAMD8Q8IZJ3 1885 aa6.76□□□□□ -1.33
CD44-228ENST00000528455 A6NL46 340 aa6.75□□□□□ -1.33
CD44-228ENST00000528455 GTPBP1O00178 669 aaKnown RBP6.75□□□□□ -1.33
CD44-228ENST00000528455 ZNF264O43296 627 aa6.75□□□□□ -1.33
CD44-228ENST00000528455 MGRN1O60291 552 aa6.75□□□□□ -1.33
CD44-228ENST00000528455 ICOSLGO75144 302 aa6.75□□□□□ -1.33
CD44-228ENST00000528455 ENTPD5O75356 428 aa6.75□□□□□ -1.33
CD44-228ENST00000528455 OXSR1O95747 527 aaPredicted RBP6.75□□□□□ -1.33
CD44-228ENST00000528455 ZNF682O95780 498 aa6.75□□□□□ -1.33
CD44-228ENST00000528455 CSTAP01040 98 aa6.75□□□□□ -1.33
CD44-228ENST00000528455 ATP6V1B2P21281 511 aa6.75□□□□□ -1.33
CD44-228ENST00000528455 CNR1P21554 472 aa6.75□□□□□ -1.33
CD44-228ENST00000528455 CASRP41180 1078 aa6.75□□□□□ -1.33
CD44-228ENST00000528455 RFX3P48380 749 aa6.75□□□□□ -1.33
CD44-228ENST00000528455 FBXW4P57775 412 aa6.75□□□□□ -1.33
CD44-228ENST00000528455 NFATC3Q12968 1075 aa6.75□□□□□ -1.33
CD44-228ENST00000528455 TUBA3CQ13748 450 aa6.75□□□□□ -1.33
CD44-228ENST00000528455 NRF1Q16656 503 aa6.75□□□□□ -1.33
CD44-228ENST00000528455 LRRC23Q53EV4 343 aaPredicted RBP6.75□□□□□ -1.33
CD44-228ENST00000528455 IFI44LQ53G44 452 aa6.75□□□□□ -1.33
CD44-228ENST00000528455 PDZK1Q5T2W1 519 aa6.75□□□□□ -1.33
CD44-228ENST00000528455 FNDC7Q5VTL7 733 aa6.75□□□□□ -1.33
CD44-228ENST00000528455 B3GNTL1Q67FW5 361 aaPredicted RBP6.75□□□□□ -1.33
CD44-228ENST00000528455 FCRLBQ6BAA4 426 aa6.75□□□□□ -1.33
CD44-228ENST00000528455 TUBA3EQ6PEY2 450 aa6.75□□□□□ -1.33
CD44-228ENST00000528455 ENPP6Q6UWR7 440 aa6.75□□□□□ -1.33
CD44-228ENST00000528455 APOOLQ6UXV4 268 aa6.75□□□□□ -1.33
CD44-228ENST00000528455 OLIG3Q7RTU3 272 aa6.75□□□□□ -1.33
CD44-228ENST00000528455 ZNF550Q7Z398 422 aa6.75□□□□□ -1.33
CD44-228ENST00000528455 ADGRG5Q8IZF4 528 aa6.75□□□□□ -1.33
CD44-228ENST00000528455 CLIP4Q8N3C7 705 aa6.75□□□□□ -1.33
CD44-228ENST00000528455 SMYD1Q8NB12 490 aa6.75□□□□□ -1.33
CD44-228ENST00000528455 POGLUT1Q8NBL1 392 aa6.75□□□□□ -1.33
CD44-228ENST00000528455 BVESQ8NE79 360 aa6.75□□□□□ -1.33
CD44-228ENST00000528455 FDCSPQ8NFU4 85 aa6.75□□□□□ -1.33
CD44-228ENST00000528455 GPR32P1Q8NGA4 272 aa6.75□□□□□ -1.33
CD44-228ENST00000528455 GRHL3Q8TE85 626 aa6.75□□□□□ -1.33
CD44-228ENST00000528455 DUSP19Q8WTR2 217 aa6.75□□□□□ -1.33
CD44-228ENST00000528455 NR4A3Q92570 626 aa6.75□□□□□ -1.33
CD44-228ENST00000528455 STMN2Q93045 179 aa6.75□□□□□ -1.33
CD44-228ENST00000528455 SLCO4A1Q96BD0 722 aa6.75□□□□□ -1.33
CD44-228ENST00000528455 TPD52L3Q96J77 140 aa6.75□□□□□ -1.33
CD44-228ENST00000528455 NODALQ96S42 347 aa6.75□□□□□ -1.33
CD44-228ENST00000528455 ZNF347Q96SE7 839 aa6.75□□□□□ -1.33
CD44-228ENST00000528455 SEPHS2Q99611 448 aa6.75□□□□□ -1.33
CD44-228ENST00000528455 SMAD5Q99717 465 aaKnown RBP6.75□□□□□ -1.33
CD44-228ENST00000528455 CHID1Q9BWS9 393 aa6.75□□□□□ -1.33
CD44-228ENST00000528455 TBL1XR1Q9BZK7 514 aa6.75□□□□□ -1.33
CD44-228ENST00000528455 POLR2J2Q9GZM3 115 aaKnown RBP6.75□□□□□ -1.33
CD44-228ENST00000528455 LAT2Q9GZY6 243 aa6.75□□□□□ -1.33
CD44-228ENST00000528455 QRSL1Q9H0R6 528 aaKnown RBP6.75□□□□□ -1.33
CD44-228ENST00000528455 POLR2J3Q9H1A7 115 aaKnown RBP6.75□□□□□ -1.33
CD44-228ENST00000528455 SLC25A18Q9H1K4 315 aa6.75□□□□□ -1.33
CD44-228ENST00000528455 DCLRE1BQ9H816 532 aa6.75□□□□□ -1.33
CD44-228ENST00000528455 S100A14Q9HCY8 104 aa6.75□□□□□ -1.33
CD44-228ENST00000528455 SH2D2AQ9NP31 389 aa6.75□□□□□ -1.33
CD44-228ENST00000528455 EXOSC3Q9NQT5 275 aaKnown RBP6.75□□□□□ -1.33
CD44-228ENST00000528455 C19orf73Q9NVV2 129 aa6.75□□□□□ -1.33
CD44-228ENST00000528455 GPR83Q9NYM4 423 aa6.75□□□□□ -1.33
CD44-228ENST00000528455 LRFN1Q9P244 771 aa6.75□□□□□ -1.33
CD44-228ENST00000528455 SLC13A4Q9UKG4 626 aa6.75□□□□□ -1.33
CD44-228ENST00000528455 ZNF443Q9Y2A4 671 aaPredicted RBP6.75□□□□□ -1.33
CD44-228ENST00000528455 SLC9A8Q9Y2E8 581 aa6.75□□□□□ -1.33
CD44-228ENST00000528455 EMC9Q9Y3B6 208 aa6.75□□□□□ -1.33
CD44-228ENST00000528455 FAM32AQ9Y421 112 aaKnown RBP6.75□□□□□ -1.33
CD44-228ENST00000528455 CHCHD2Q9Y6H1 151 aaPredicted RBP6.75□□□□□ -1.33
CD44-228ENST00000528455 SPTA1P02549 2419 aa6.75□□□□□ -1.33
CD44-228ENST00000528455 HEATR5AQ86XA9 2040 aa6.74□□□□□ -1.33
CD44-228ENST00000528455 TLN1Q9Y490 2541 aaKnown RBP6.74□□□□□ -1.33
CD44-228ENST00000528455 IGLV3-32A0A0A0MS00 114 aa6.74□□□□□ -1.33
CD44-228ENST00000528455 OR5H15A6NDH6 313 aa6.74□□□□□ -1.33
CD44-228ENST00000528455 J3QKU1 62 aa6.74□□□□□ -1.33
CD44-228ENST00000528455 FAAHO00519 579 aa6.74□□□□□ -1.33
CD44-228ENST00000528455 FMO6PO60774 539 aa6.74□□□□□ -1.33
CD44-228ENST00000528455 KRT36O76013 467 aa6.74□□□□□ -1.33
CD44-228ENST00000528455 NEURL1O76050 574 aa6.74□□□□□ -1.33
CD44-228ENST00000528455 ANGPTL1O95841 491 aa6.74□□□□□ -1.33
CD44-228ENST00000528455 WDPCPO95876 746 aa6.74□□□□□ -1.33
CD44-228ENST00000528455 EPPINO95925 133 aa6.74□□□□□ -1.33
CD44-228ENST00000528455 SEMG1P04279 462 aa6.74□□□□□ -1.33
CD44-228ENST00000528455 THRBP10828 461 aa6.74□□□□□ -1.33
CD44-228ENST00000528455 FCGR1AP12314 374 aa6.74□□□□□ -1.33
CD44-228ENST00000528455 PLA2G2AP14555 144 aa6.74□□□□□ -1.33
CD44-228ENST00000528455 RHCEP18577 417 aa6.74□□□□□ -1.33
CD44-228ENST00000528455 FASP25445 335 aa6.74□□□□□ -1.33
CD44-228ENST00000528455 IFNA8P32881 189 aa6.74□□□□□ -1.33
CD44-228ENST00000528455 EVI2BP34910 448 aa6.74□□□□□ -1.33
CD44-228ENST00000528455 ACAA2P42765 397 aaKnown RBP6.74□□□□□ -1.33
CD44-228ENST00000528455 MAGEA2P43356 314 aa6.74□□□□□ -1.33
CD44-228ENST00000528455 SLC6A8P48029 635 aa6.74□□□□□ -1.33
CD44-228ENST00000528455 P2RX1P51575 399 aa6.74□□□□□ -1.33
CD44-228ENST00000528455 HMGA2P52926 109 aa6.74□□□□□ -1.33
CD44-228ENST00000528455 GAS1P54826 345 aa6.74□□□□□ -1.33
CD44-228ENST00000528455 SMIM11AP58511 58 aa6.74□□□□□ -1.33
CD44-228ENST00000528455 OC90Q02509 493 aaPredicted RBP6.74□□□□□ -1.33
CD44-228ENST00000528455 KCNAB2Q13303 367 aa6.74□□□□□ -1.33
CD44-228ENST00000528455 GK3PQ14409 553 aa6.74□□□□□ -1.33
CD44-228ENST00000528455 GLIPR1L2Q4G1C9 344 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms