RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 SMIM31A0A1B0GVY4 71 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 SYCE3A1L190 88 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 SH3PXD2BA1X283 911 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 LRCOL1A6NCL2 159 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 ANKRD65E5RJM6 399 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 PSMD11O00231 422 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 LAD1O00515 517 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 CCSO14618 274 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 RASGRF2O14827 1237 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 FLRT2O43155 660 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 DENRO43583 198 aaKnown RBP1.52□□□□□ -2.17
NUP54-208ENST00000508604 NOS1APO75052 506 aaPredicted RBP1.52□□□□□ -2.17
NUP54-208ENST00000508604 CIAO1O76071 339 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 PDE5AO76074 875 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 PLEKHA8P1O95397 391 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 PTBP3O95758 552 aaKnown RBP1.52□□□□□ -2.17
NUP54-208ENST00000508604 OTCP00480 354 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 GLAP06280 429 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 CAPN1P07384 714 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 SERPINF2P08697 491 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 HSMCR30P0CW71 290 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 SLC2A3P11169 496 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 RALAP11233 206 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 CCDC130P13994 396 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 CCNA2P20248 432 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 GLRA2P23416 452 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 HTR1FP30939 366 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 NUP62P37198 522 aaPredicted RBP1.52□□□□□ -2.17
NUP54-208ENST00000508604 ACAA2P42765 397 aaKnown RBP1.52□□□□□ -2.17
NUP54-208ENST00000508604 AP2S1P53680 142 aaPredicted RBP1.52□□□□□ -2.17
NUP54-208ENST00000508604 AIF1P55008 147 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 PSMD4P55036 377 aaKnown RBP1.52□□□□□ -2.17
NUP54-208ENST00000508604 AP1S2P56377 157 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 GNG2P59768 71 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 GMFBP60983 142 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 ACTR1AP61163 376 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 ATP6V0D1P61421 351 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 FADDQ13158 208 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 PLD1Q13393 1074 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 EIF4EBP1Q13541 118 aaPredicted RBP1.52□□□□□ -2.17
NUP54-208ENST00000508604 RCN2Q14257 317 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 CDO1Q16878 200 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 TYSND1Q2T9J0 566 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 C2orf76Q3KRA6 126 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 DNAL1Q4LDG9 190 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 NHSL2Q5HYW2 709 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 TOR1AIP1Q5JTV8 583 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 TEX30Q5JUR7 227 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 ANKRD20A2Q5SQ80 823 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 SPOUT1Q5T280 376 aaKnown RBP1.52□□□□□ -2.17
NUP54-208ENST00000508604 LIN9Q5TKA1 542 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 ANKRD20A1Q5TYW2 823 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 ANKRD20A3Q5VUR7 823 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 DUPD1Q68J44 220 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 IYDQ6PHW0 289 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 KDM7AQ6ZMT4 941 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 TRMT10CQ7L0Y3 403 aaKnown RBP1.52□□□□□ -2.17
NUP54-208ENST00000508604 NET1Q7Z628 596 aaPredicted RBP1.52□□□□□ -2.17
NUP54-208ENST00000508604 CACUL1Q86Y37 369 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 PSTKQ8IV42 348 aaKnown RBP1.52□□□□□ -2.17
NUP54-208ENST00000508604 TIGD4Q8IY51 512 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 SLC38A6Q8IZM9 456 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 SYCE1Q8N0S2 351 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 CLEC4FQ8N1N0 589 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 TCAIMQ8N3R3 496 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 TBC1D19Q8N5T2 526 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 C10orf53Q8N6V4 93 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 ZNF321PQ8N8H1 164 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 ANKFN1Q8N957 763 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 MINDY2Q8NBR6 621 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 MCOLN3Q8TDD5 553 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 CRYGNQ8WXF5 182 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 DNASE1L2Q92874 299 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 MARC2Q969Z3 335 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 FAM162AQ96A26 154 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 TMIGD2Q96BF3 282 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 SLC25A36Q96CQ1 311 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 ZBED3Q96IU2 234 aaPredicted RBP1.52□□□□□ -2.17
NUP54-208ENST00000508604 PIWIL1Q96J94 861 aaKnown RBP1.52□□□□□ -2.17
NUP54-208ENST00000508604 NSMCE2Q96MF7 247 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 TCEANC2Q96MN5 208 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 PARK7Q99497 189 aaKnown RBP1.52□□□□□ -2.17
NUP54-208ENST00000508604 FERMT1Q9BQL6 677 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 SPXQ9BT56 116 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 SPATA16Q9BXB7 569 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 GON7Q9BXV9 100 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 WWP1Q9H0M0 922 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 OR51V1Q9H2C8 321 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 ZNF702PQ9H963 129 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 PALMDQ9NP74 551 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 FAM114A2Q9NRY5 505 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 C20orf96Q9NUD7 363 aaPredicted RBP1.52□□□□□ -2.17
NUP54-208ENST00000508604 VPS54Q9P1Q0 977 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 STX18Q9P2W9 335 aaKnown RBP1.52□□□□□ -2.17
NUP54-208ENST00000508604 NARFQ9UHQ1 456 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 GMEB2Q9UKD1 530 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 SNX6Q9UNH7 406 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 STX8Q9UNK0 236 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 ENTPD4Q9Y227 616 aa1.52□□□□□ -2.17
NUP54-208ENST00000508604 SAMHD1Q9Y3Z3 626 aaKnown RBP1.52□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms