RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 PIGWQ7Z7B1 504 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 SETD3Q86TU7 594 aaPredicted RBP1.8□□□□□ -2.12
HMGB1-208ENST00000490788 ADCK1Q86TW2 530 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 METTL23Q86XA0 190 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 HPS6Q86YV9 775 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 ERI1Q8IV48 349 aaKnown RBP1.8□□□□□ -2.12
HMGB1-208ENST00000490788 NELFCDQ8IXH7 590 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 PHC2Q8IXK0 858 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 PRSS58Q8IYP2 241 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 MICU2Q8IYU8 434 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 RCOR2Q8IZ40 523 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 SPAG16Q8N0X2 631 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 C4orf33Q8N1A6 199 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 SLC35F6Q8N357 371 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 ASCC1Q8N9N2 400 aaKnown RBP1.8□□□□□ -2.12
HMGB1-208ENST00000490788 AQP11Q8NBQ7 271 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 CAMKVQ8NCB2 501 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 CATSPER1Q8NEC5 780 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 TRPV3Q8NET8 790 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 LPCAT1Q8NF37 534 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 VN1R2Q8NFZ6 395 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 OR9A1PQ8NGU1 263 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 OR5H6Q8NGV6 325 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 RAB3IL1Q8TBN0 382 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 MCOLN3Q8TDD5 553 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 LRRC15Q8TF66 581 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 NPRL2Q8WTW4 380 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 CA5BP1Q8WTZ4 195 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 HEXDCQ8WVB3 486 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 SCFD1Q8WVM8 642 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 UBLCP1Q8WVY7 318 aaPredicted RBP1.8□□□□□ -2.12
HMGB1-208ENST00000490788 BORCS5Q969J3 196 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 PYCR2Q96C36 320 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 TUBGCP3Q96CW5 907 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 CHMP6Q96FZ7 201 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 ATXN7L3BQ96GX2 97 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 PLEKHA8Q96JA3 519 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 C2orf48Q96LS8 159 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 BIRC8Q96P09 236 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 PANX2Q96RD6 677 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 RIT2Q99578 217 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 ZNF184Q99676 751 aaPredicted RBP1.8□□□□□ -2.12
HMGB1-208ENST00000490788 NAPGQ99747 312 aaPredicted RBP1.8□□□□□ -2.12
HMGB1-208ENST00000490788 EGFL8Q99944 293 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 ECSITQ9BQ95 431 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 SOSTQ9BQB4 213 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 ADPGKQ9BRR6 497 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 UBAC1Q9BSL1 405 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 PI4K2AQ9BTU6 479 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 PINK1Q9BXM7 581 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 TXLNGYQ9BZA5 131 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 GPR61Q9BZJ8 451 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 ANKRD2Q9GZV1 360 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 ABCG8Q9H221 673 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 OR51B5Q9H339 312 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 SAV1Q9H4B6 383 aaPredicted RBP1.8□□□□□ -2.12
HMGB1-208ENST00000490788 ACTL8Q9H568 366 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 XKR8Q9H6D3 395 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 AZI2Q9H6S1 392 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 KCNK13Q9HB14 408 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 MRPL47Q9HD33 250 aaKnown RBP1.8□□□□□ -2.12
HMGB1-208ENST00000490788 C20orf96Q9NUD7 363 aaPredicted RBP1.8□□□□□ -2.12
HMGB1-208ENST00000490788 DDX28Q9NUL7 540 aaKnown RBP1.8□□□□□ -2.12
HMGB1-208ENST00000490788 TBC1D13Q9NVG8 400 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 THUMPD1Q9NXG2 353 aaKnown RBP1.8□□□□□ -2.12
HMGB1-208ENST00000490788 NLGN3Q9NZ94 848 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 MAT2BQ9NZL9 334 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 UVRAGQ9P2Y5 699 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 UXTQ9UBK9 157 aaPredicted RBP1.8□□□□□ -2.12
HMGB1-208ENST00000490788 IL36AQ9UHA7 158 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 BCAP29Q9UHQ4 241 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 TRMT6Q9UJA5 497 aaKnown RBP1.8□□□□□ -2.12
HMGB1-208ENST00000490788 GNPTGQ9UJJ9 305 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 NUP50Q9UKX7 468 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 PLCL2Q9UPR0 1127 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 SLC22A14Q9Y267 594 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 SNX24Q9Y343 169 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 PCDHGA1Q9Y5H4 931 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 CACNA1DQ01668 2161 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 ROBO3Q96MS0 1386 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 NBPF19A0A087WUL8 3843 aa1.8□□□□□ -2.12
HMGB1-208ENST00000490788 PTPRSQ13332 1948 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 SVILO95425 2214 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 URB1O60287 2271 aaKnown RBP1.79□□□□□ -2.12
HMGB1-208ENST00000490788 MTORP42345 2549 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 IGHV3OR16-10A0A075B7F0 116 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 IGKV6D-41A0A0C4DH26 115 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 A0A1B0GV90 55 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 LOC390937A0A1W2PQ73 354 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 A0A1W2PRG6 482 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 TTC26A0AVF1 554 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 ESYT2A0FGR8 921 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 EVPLLA8MZ36 301 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 H0YCG3 227 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 H3BSA7 217 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 TXNDC9O14530 226 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 SLC22A1O15245 554 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 ACOX3O15254 700 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 TXNL1O43396 289 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 SPOPO43791 374 aa1.79□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms