RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 REM1O75628 298 aa12.99□□□□□ -0.33
CUX1-209ENST00000487284 OR6B1O95007 311 aa12.99□□□□□ -0.33
CUX1-209ENST00000487284 CELA2AP08217 269 aa12.99□□□□□ -0.33
CUX1-209ENST00000487284 UBL4AP11441 157 aa12.99□□□□□ -0.33
CUX1-209ENST00000487284 JUNBP17275 347 aaPredicted RBP12.99□□□□□ -0.33
CUX1-209ENST00000487284 WT1P19544 449 aaPredicted RBP12.99□□□□□ -0.33
CUX1-209ENST00000487284 ABCD3P28288 659 aa12.99□□□□□ -0.33
CUX1-209ENST00000487284 IL12BP29460 328 aa12.99□□□□□ -0.33
CUX1-209ENST00000487284 PNLIPRP2P54317 469 aa12.99□□□□□ -0.33
CUX1-209ENST00000487284 CDK5Q00535 292 aa12.99□□□□□ -0.33
CUX1-209ENST00000487284 PLCXD2Q0VAA5 305 aa12.99□□□□□ -0.33
CUX1-209ENST00000487284 CD226Q15762 336 aa12.99□□□□□ -0.33
CUX1-209ENST00000487284 BTBD16Q32M84 506 aa12.99□□□□□ -0.33
CUX1-209ENST00000487284 NDUFAF6Q330K2 333 aa12.99□□□□□ -0.33
CUX1-209ENST00000487284 HSDL2Q6YN16 418 aa12.99□□□□□ -0.33
CUX1-209ENST00000487284 NDUFAF7Q7L592 441 aa12.99□□□□□ -0.33
CUX1-209ENST00000487284 SPARTQ8N0X7 666 aa12.99□□□□□ -0.33
CUX1-209ENST00000487284 NUBPLQ8TB37 319 aa12.99□□□□□ -0.33
CUX1-209ENST00000487284 TMEM239Q8WW34 195 aa12.99□□□□□ -0.33
CUX1-209ENST00000487284 KCNE4Q8WWG9 221 aa12.99□□□□□ -0.33
CUX1-209ENST00000487284 OMA1Q96E52 524 aa12.99□□□□□ -0.33
CUX1-209ENST00000487284 ARSGQ96EG1 525 aa12.99□□□□□ -0.33
CUX1-209ENST00000487284 MPP4Q96JB8 637 aa12.99□□□□□ -0.33
CUX1-209ENST00000487284 HS6ST2Q96MM7 605 aa12.99□□□□□ -0.33
CUX1-209ENST00000487284 SIGLEC11Q96RL6 698 aa12.99□□□□□ -0.33
CUX1-209ENST00000487284 ADOQ96SZ5 270 aa12.99□□□□□ -0.33
CUX1-209ENST00000487284 ZNF160Q9HCG1 818 aa12.99□□□□□ -0.33
CUX1-209ENST00000487284 CCNB1IP1Q9NPC3 277 aa12.99□□□□□ -0.33
CUX1-209ENST00000487284 FBXL4Q9UKA2 621 aa12.99□□□□□ -0.33
CUX1-209ENST00000487284 IGF2RP11717 2491 aa12.99□□□□□ -0.33
CUX1-209ENST00000487284 TRBV11-1A0A0K0K1C0 115 aa12.98□□□□□ -0.33
CUX1-209ENST00000487284 A0A1W2PQD3 144 aa12.98□□□□□ -0.33
CUX1-209ENST00000487284 M0R129 80 aa12.98□□□□□ -0.33
CUX1-209ENST00000487284 MRPS14O60783 128 aaKnown RBP12.98□□□□□ -0.33
CUX1-209ENST00000487284 HPGDP15428 266 aa12.98□□□□□ -0.33
CUX1-209ENST00000487284 RBM34P42696 430 aaKnown RBP12.98□□□□□ -0.33
CUX1-209ENST00000487284 GPR4P46093 362 aa12.98□□□□□ -0.33
CUX1-209ENST00000487284 SNRPGP62308 76 aaKnown RBP12.98□□□□□ -0.33
CUX1-209ENST00000487284 PRKCDQ05655 676 aa12.98□□□□□ -0.33
CUX1-209ENST00000487284 SKP2Q13309 424 aa12.98□□□□□ -0.33
CUX1-209ENST00000487284 ATP1A4Q13733 1029 aa12.98□□□□□ -0.33
CUX1-209ENST00000487284 ATP1A1-AS1Q5TC04 95 aa12.98□□□□□ -0.33
CUX1-209ENST00000487284 ULK3Q6PHR2 472 aa12.98□□□□□ -0.33
CUX1-209ENST00000487284 APOOLQ6UXV4 268 aa12.98□□□□□ -0.33
CUX1-209ENST00000487284 LINC00114Q6XXX2 140 aa12.98□□□□□ -0.33
CUX1-209ENST00000487284 KCTD8Q6ZWB6 473 aa12.98□□□□□ -0.33
CUX1-209ENST00000487284 MEX3DQ86XN8 651 aaKnown RBP12.98□□□□□ -0.33
CUX1-209ENST00000487284 P3H2Q8IVL5 708 aa12.98□□□□□ -0.33
CUX1-209ENST00000487284 CLDN22Q8N7P3 220 aa12.98□□□□□ -0.33
CUX1-209ENST00000487284 ZNF248Q8NDW4 579 aa12.98□□□□□ -0.33
CUX1-209ENST00000487284 OR8K3Q8NH51 312 aa12.98□□□□□ -0.33
CUX1-209ENST00000487284 GRHL3Q8TE85 626 aa12.98□□□□□ -0.33
CUX1-209ENST00000487284 NODALQ96S42 347 aa12.98□□□□□ -0.33
CUX1-209ENST00000487284 TMEM5Q9Y2B1 443 aa12.98□□□□□ -0.33
CUX1-209ENST00000487284 PTGES3LE9PB15 166 aa12.98□□□□□ -0.33
CUX1-209ENST00000487284 ZNF264O43296 627 aa12.98□□□□□ -0.33
CUX1-209ENST00000487284 OIP5O43482 229 aa12.98□□□□□ -0.33
CUX1-209ENST00000487284 GIPRP48546 466 aa12.98□□□□□ -0.33
CUX1-209ENST00000487284 CTBP2P56545 445 aa12.98□□□□□ -0.33
CUX1-209ENST00000487284 ALG10BQ5I7T1 473 aa12.98□□□□□ -0.33
CUX1-209ENST00000487284 TMEM201Q5SNT2 666 aa12.98□□□□□ -0.33
CUX1-209ENST00000487284 PLAG1Q6DJT9 500 aa12.98□□□□□ -0.33
CUX1-209ENST00000487284 XAF1Q6GPH4 301 aa12.98□□□□□ -0.33
CUX1-209ENST00000487284 CASP12Q6UXS9 341 aa12.98□□□□□ -0.33
CUX1-209ENST00000487284 ZNF620Q6ZNG0 422 aa12.98□□□□□ -0.33
CUX1-209ENST00000487284 OR8D4Q8NGM9 314 aa12.98□□□□□ -0.33
CUX1-209ENST00000487284 SNIP1Q8TAD8 396 aaKnown RBP12.98□□□□□ -0.33
CUX1-209ENST00000487284 TEX47Q8TBZ9 253 aa12.98□□□□□ -0.33
CUX1-209ENST00000487284 PHOSPHO1Q8TCT1 267 aa12.98□□□□□ -0.33
CUX1-209ENST00000487284 ELP5Q8TE02 316 aa12.98□□□□□ -0.33
CUX1-209ENST00000487284 TRUB1Q8WWH5 349 aaKnown RBP12.98□□□□□ -0.33
CUX1-209ENST00000487284 IPCEF1Q8WWN9 437 aaPredicted RBP12.98□□□□□ -0.33
CUX1-209ENST00000487284 TMIGD2Q96BF3 282 aa12.98□□□□□ -0.33
CUX1-209ENST00000487284 PLA2G12AQ9BZM1 189 aa12.98□□□□□ -0.33
CUX1-209ENST00000487284 DSN1Q9H410 356 aa12.98□□□□□ -0.33
CUX1-209ENST00000487284 EGLN3Q9H6Z9 239 aa12.98□□□□□ -0.33
CUX1-209ENST00000487284 VCX3AQ9NNX9 186 aa12.98□□□□□ -0.33
CUX1-209ENST00000487284 FKBP14Q9NWM8 211 aa12.98□□□□□ -0.33
CUX1-209ENST00000487284 IL20Q9NYY1 176 aa12.98□□□□□ -0.33
CUX1-209ENST00000487284 MED31Q9Y3C7 131 aa12.98□□□□□ -0.33
CUX1-209ENST00000487284 PCDHGB1Q9Y5G3 927 aa12.98□□□□□ -0.33
CUX1-209ENST00000487284 SNX5Q9Y5X3 404 aa12.98□□□□□ -0.33
CUX1-209ENST00000487284 LAMA5O15230 3695 aa12.97□□□□□ -0.33
CUX1-209ENST00000487284 DOCK10Q96BY6 2186 aa12.97□□□□□ -0.33
CUX1-209ENST00000487284 SH3D21A4FU49 640 aa12.97□□□□□ -0.33
CUX1-209ENST00000487284 OR6C70A6NIJ9 312 aa12.97□□□□□ -0.33
CUX1-209ENST00000487284 ALG1L2C9J202 215 aa12.97□□□□□ -0.33
CUX1-209ENST00000487284 NKX2-8O15522 239 aa12.97□□□□□ -0.33
CUX1-209ENST00000487284 HPP00738 406 aa12.97□□□□□ -0.33
CUX1-209ENST00000487284 SMSP52788 366 aa12.97□□□□□ -0.33
CUX1-209ENST00000487284 PIGFQ07326 219 aa12.97□□□□□ -0.33
CUX1-209ENST00000487284 GINS1Q14691 196 aa12.97□□□□□ -0.33
CUX1-209ENST00000487284 EXT1Q16394 746 aa12.97□□□□□ -0.33
CUX1-209ENST00000487284 ZBED5Q49AG3 693 aa12.97□□□□□ -0.33
CUX1-209ENST00000487284 DESI1Q6ICB0 168 aa12.97□□□□□ -0.33
CUX1-209ENST00000487284 PTCHD4Q6ZW05 846 aa12.97□□□□□ -0.33
CUX1-209ENST00000487284 TMPRSS11FQ6ZWK6 438 aa12.97□□□□□ -0.33
CUX1-209ENST00000487284 IQCF1Q8N6M8 205 aa12.97□□□□□ -0.33
CUX1-209ENST00000487284 GATSQ8NAP1 163 aa12.97□□□□□ -0.33
CUX1-209ENST00000487284 OR8J1Q8NGP2 316 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms