RNA–Protein interactions for RNA: ENST00000478423.6

NPHP4-208, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 4,467 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-208ENST00000478423 SLC39A1Q9NY26 324 aa13.24□□□□□ -0.29
NPHP4-208ENST00000478423 HEMK1Q9Y5R4 338 aaPredicted RBP13.24□□□□□ -0.29
NPHP4-208ENST00000478423 CEP250Q9BV73 2442 aa13.24□□□□□ -0.29
NPHP4-208ENST00000478423 NSG1A0A0A6YYJ2 146 aa13.23□□□□□ -0.29
NPHP4-208ENST00000478423 PRH1P02810 166 aa13.23□□□□□ -0.29
NPHP4-208ENST00000478423 ACP2P11117 423 aa13.23□□□□□ -0.29
NPHP4-208ENST00000478423 CFL1P23528 166 aaKnown RBP13.23□□□□□ -0.29
NPHP4-208ENST00000478423 CD40LGP29965 261 aa13.23□□□□□ -0.29
NPHP4-208ENST00000478423 TRMT12Q53H54 448 aaKnown RBP13.23□□□□□ -0.29
NPHP4-208ENST00000478423 ZNF322Q6U7Q0 402 aaPredicted RBP13.23□□□□□ -0.29
NPHP4-208ENST00000478423 IL20RBQ6UXL0 311 aa13.23□□□□□ -0.29
NPHP4-208ENST00000478423 RNF113BQ8IZP6 322 aaKnown RBP13.23□□□□□ -0.29
NPHP4-208ENST00000478423 TRMT10AQ8TBZ6 339 aaKnown RBP13.23□□□□□ -0.29
NPHP4-208ENST00000478423 ELP5Q8TE02 316 aa13.23□□□□□ -0.29
NPHP4-208ENST00000478423 CCDC32Q9BV29 185 aa13.23□□□□□ -0.29
NPHP4-208ENST00000478423 ICKQ9UPZ9 632 aa13.23□□□□□ -0.29
NPHP4-208ENST00000478423 NINQ8N4C6 2090 aa13.23□□□□□ -0.29
NPHP4-208ENST00000478423 A0A1B0GWA3 101 aa13.23□□□□□ -0.29
NPHP4-208ENST00000478423 DCDC2BA2VCK2 349 aa13.23□□□□□ -0.29
NPHP4-208ENST00000478423 SERINC4A6NH21 518 aa13.23□□□□□ -0.29
NPHP4-208ENST00000478423 L7N2F9 121 aa13.23□□□□□ -0.29
NPHP4-208ENST00000478423 ANKRD28O15084 1053 aa13.23□□□□□ -0.29
NPHP4-208ENST00000478423 SLC16A6O15403 523 aa13.23□□□□□ -0.29
NPHP4-208ENST00000478423 CEACAM5P06731 702 aa13.23□□□□□ -0.29
NPHP4-208ENST00000478423 LIM2P55344 173 aa13.23□□□□□ -0.29
NPHP4-208ENST00000478423 ATXN7L3Q14CW9 347 aaPredicted RBP13.23□□□□□ -0.29
NPHP4-208ENST00000478423 KIAA1211LQ6NV74 962 aa13.23□□□□□ -0.29
NPHP4-208ENST00000478423 RBM45Q8IUH3 476 aaKnown RBP13.23□□□□□ -0.29
NPHP4-208ENST00000478423 SYNPOQ8N3V7 929 aa13.23□□□□□ -0.29
NPHP4-208ENST00000478423 THAP6Q8TBB0 222 aa13.23□□□□□ -0.29
NPHP4-208ENST00000478423 ZNF431Q8TF32 576 aaPredicted RBP13.23□□□□□ -0.29
NPHP4-208ENST00000478423 ZNF419Q96HQ0 510 aaPredicted RBP13.23□□□□□ -0.29
NPHP4-208ENST00000478423 TNFRSF13CQ96RJ3 184 aa13.23□□□□□ -0.29
NPHP4-208ENST00000478423 KATNB1Q9BVA0 655 aa13.23□□□□□ -0.29
NPHP4-208ENST00000478423 FBXO9Q9UK97 447 aaPredicted RBP13.23□□□□□ -0.29
NPHP4-208ENST00000478423 CNOT1A5YKK6 2376 aaKnown RBP13.23□□□□□ -0.29
NPHP4-208ENST00000478423 MAOAP21397 527 aa13.23□□□□□ -0.29
NPHP4-208ENST00000478423 PRKAR1BP31321 381 aa13.23□□□□□ -0.29
NPHP4-208ENST00000478423 RPS5P46782 204 aaKnown RBP13.23□□□□□ -0.29
NPHP4-208ENST00000478423 RIN1Q13671 783 aa13.23□□□□□ -0.29
NPHP4-208ENST00000478423 BCL2L15Q5TBC7 163 aa13.23□□□□□ -0.29
NPHP4-208ENST00000478423 GARNL3Q5VVW2 1013 aa13.23□□□□□ -0.29
NPHP4-208ENST00000478423 PAPD4Q6PIY7 484 aaKnown RBP13.23□□□□□ -0.29
NPHP4-208ENST00000478423 ZNF615Q8N8J6 731 aa13.23□□□□□ -0.29
NPHP4-208ENST00000478423 OR14A16Q8NHC5 309 aa13.23□□□□□ -0.29
NPHP4-208ENST00000478423 SLC7A13Q8TCU3 470 aa13.23□□□□□ -0.29
NPHP4-208ENST00000478423 OR6C1Q96RD1 312 aa13.23□□□□□ -0.29
NPHP4-208ENST00000478423 GALR3O60755 368 aaPredicted RBP13.23□□□□□ -0.29
NPHP4-208ENST00000478423 DCNP07585 359 aaKnown RBP13.23□□□□□ -0.29
NPHP4-208ENST00000478423 EEF1A2Q05639 463 aaKnown RBP13.23□□□□□ -0.29
NPHP4-208ENST00000478423 SQSTM1Q13501 440 aa13.23□□□□□ -0.29
NPHP4-208ENST00000478423 TRIM61Q5EBN2 209 aa13.23□□□□□ -0.29
NPHP4-208ENST00000478423 NLRP8Q86W28 1048 aa13.23□□□□□ -0.29
NPHP4-208ENST00000478423 GDPD1Q8N9F7 314 aa13.23□□□□□ -0.29
NPHP4-208ENST00000478423 OR2A1Q8NGT9 310 aa13.23□□□□□ -0.29
NPHP4-208ENST00000478423 FOXN4Q96NZ1 517 aa13.23□□□□□ -0.29
NPHP4-208ENST00000478423 FOXQ1Q9C009 403 aa13.23□□□□□ -0.29
NPHP4-208ENST00000478423 MED20Q9H944 212 aa13.23□□□□□ -0.29
NPHP4-208ENST00000478423 FOLH1BQ9HBA9 442 aa13.23□□□□□ -0.29
NPHP4-208ENST00000478423 C14orf166Q9Y224 244 aaKnown RBP13.23□□□□□ -0.29
NPHP4-208ENST00000478423 WDR37Q9Y2I8 494 aa13.23□□□□□ -0.29
NPHP4-208ENST00000478423 RNF215Q9Y6U7 377 aa13.23□□□□□ -0.29
NPHP4-208ENST00000478423 A6NIZ1 184 aa13.22□□□□□ -0.29
NPHP4-208ENST00000478423 SYT7O43581 403 aa13.22□□□□□ -0.29
NPHP4-208ENST00000478423 HCRTR1O43613 425 aa13.22□□□□□ -0.29
NPHP4-208ENST00000478423 C1QAP02745 245 aa13.22□□□□□ -0.29
NPHP4-208ENST00000478423 CDK4P11802 303 aa13.22□□□□□ -0.29
NPHP4-208ENST00000478423 VASPP50552 380 aaPredicted RBP13.22□□□□□ -0.29
NPHP4-208ENST00000478423 DAP3P51398 398 aaKnown RBP13.22□□□□□ -0.29
NPHP4-208ENST00000478423 OR1D5P58170 312 aa13.22□□□□□ -0.29
NPHP4-208ENST00000478423 RAP1BP61224 184 aa13.22□□□□□ -0.29
NPHP4-208ENST00000478423 RAP1AP62834 184 aa13.22□□□□□ -0.29
NPHP4-208ENST00000478423 DUSP5Q16690 384 aa13.22□□□□□ -0.29
NPHP4-208ENST00000478423 C14orf28Q4W4Y0 310 aa13.22□□□□□ -0.29
NPHP4-208ENST00000478423 FAM219BQ5XKK7 198 aa13.22□□□□□ -0.29
NPHP4-208ENST00000478423 CNIH2Q6PI25 160 aa13.22□□□□□ -0.29
NPHP4-208ENST00000478423 MED25Q71SY5 747 aa13.22□□□□□ -0.29
NPHP4-208ENST00000478423 ZNF565Q8N9K5 539 aa13.22□□□□□ -0.29
NPHP4-208ENST00000478423 HOXB13Q92826 284 aaPredicted RBP13.22□□□□□ -0.29
NPHP4-208ENST00000478423 ATOH1Q92858 354 aaPredicted RBP13.22□□□□□ -0.29
NPHP4-208ENST00000478423 CREB3L1Q96BA8 519 aa13.22□□□□□ -0.29
NPHP4-208ENST00000478423 EID2BQ96D98 161 aa13.22□□□□□ -0.29
NPHP4-208ENST00000478423 CCDC120Q96HB5 630 aa13.22□□□□□ -0.29
NPHP4-208ENST00000478423 RPP25Q9BUL9 199 aaKnown RBP13.22□□□□□ -0.29
NPHP4-208ENST00000478423 GAREM1Q9H706 876 aa13.22□□□□□ -0.29
NPHP4-208ENST00000478423 DOCK5Q9H7D0 1870 aa13.22□□□□□ -0.29
NPHP4-208ENST00000478423 MEGF11A6BM72 1044 aa13.22□□□□□ -0.29
NPHP4-208ENST00000478423 GJE1A6NN92 205 aa13.22□□□□□ -0.29
NPHP4-208ENST00000478423 VSTM5A8MXK1 200 aa13.22□□□□□ -0.29
NPHP4-208ENST00000478423 ST6GAL1P15907 406 aa13.22□□□□□ -0.29
NPHP4-208ENST00000478423 RAB2AP61019 212 aa13.22□□□□□ -0.29
NPHP4-208ENST00000478423 HERV-K104P61576 105 aa13.22□□□□□ -0.29
NPHP4-208ENST00000478423 POU3F1Q03052 451 aaPredicted RBP13.22□□□□□ -0.29
NPHP4-208ENST00000478423 MRPL49Q13405 166 aaKnown RBP13.22□□□□□ -0.29
NPHP4-208ENST00000478423 EIF2B1Q14232 305 aaKnown RBP13.22□□□□□ -0.29
NPHP4-208ENST00000478423 SPCS2Q15005 226 aa13.22□□□□□ -0.29
NPHP4-208ENST00000478423 RAB11BQ15907 218 aa13.22□□□□□ -0.29
NPHP4-208ENST00000478423 MANEAQ5SRI9 462 aa13.22□□□□□ -0.29
NPHP4-208ENST00000478423 GPR139Q6DWJ6 353 aa13.22□□□□□ -0.29
NPHP4-208ENST00000478423 SFRP4Q6FHJ7 346 aaPredicted RBP13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms