RNA–Protein interactions for RNA: ENST00000469897.1

CPSF4-210, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 689 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-210ENST00000469897 SERINC1Q9NRX5 453 aa11.78□□□□□ -0.52
CPSF4-210ENST00000469897 NOP53Q9NZM5 478 aaKnown RBP11.78□□□□□ -0.52
CPSF4-210ENST00000469897 KLHL9Q9P2J3 617 aa11.78□□□□□ -0.52
CPSF4-210ENST00000469897 PCDHGB4Q9UN71 923 aa11.78□□□□□ -0.52
CPSF4-210ENST00000469897 RNF115Q9Y4L5 304 aa11.78□□□□□ -0.52
CPSF4-210ENST00000469897 MED12LQ86YW9 2145 aa11.78□□□□□ -0.52
CPSF4-210ENST00000469897 RNF103-CHMP3A0A140T963 221 aa11.77□□□□□ -0.53
CPSF4-210ENST00000469897 DPRXA6NFQ7 191 aa11.77□□□□□ -0.53
CPSF4-210ENST00000469897 INAFM1C9JVW0 142 aa11.77□□□□□ -0.53
CPSF4-210ENST00000469897 ETV2O00321 342 aaPredicted RBP11.77□□□□□ -0.53
CPSF4-210ENST00000469897 RNASET2O00584 256 aaKnown RBP11.77□□□□□ -0.53
CPSF4-210ENST00000469897 SMAD9O15198 467 aaKnown RBP11.77□□□□□ -0.53
CPSF4-210ENST00000469897 CYTIPO60759 359 aa11.77□□□□□ -0.53
CPSF4-210ENST00000469897 LYZL6O75951 148 aa11.77□□□□□ -0.53
CPSF4-210ENST00000469897 SOD3P08294 240 aa11.77□□□□□ -0.53
CPSF4-210ENST00000469897 UBTFL6P0CB48 400 aaPredicted RBP11.77□□□□□ -0.53
CPSF4-210ENST00000469897 OR3A2P47893 321 aa11.77□□□□□ -0.53
CPSF4-210ENST00000469897 RPS4XP62701 263 aaKnown RBP11.77□□□□□ -0.53
CPSF4-210ENST00000469897 PHC1P78364 1004 aa11.77□□□□□ -0.53
CPSF4-210ENST00000469897 SKP2Q13309 424 aa11.77□□□□□ -0.53
CPSF4-210ENST00000469897 TNK1Q13470 666 aa11.77□□□□□ -0.53
CPSF4-210ENST00000469897 CHI3L2Q15782 390 aa11.77□□□□□ -0.53
CPSF4-210ENST00000469897 MAPK14Q16539 360 aa11.77□□□□□ -0.53
CPSF4-210ENST00000469897 EIF3MQ7L2H7 374 aaKnown RBP11.77□□□□□ -0.53
CPSF4-210ENST00000469897 BHLHA15Q7RTS1 189 aaPredicted RBP11.77□□□□□ -0.53
CPSF4-210ENST00000469897 C16orf62Q7Z3J2 963 aa11.77□□□□□ -0.53
CPSF4-210ENST00000469897 HMGN2P46Q86SG4 172 aa11.77□□□□□ -0.53
CPSF4-210ENST00000469897 ANKRD46Q86W74 232 aa11.77□□□□□ -0.53
CPSF4-210ENST00000469897 PIWIL2Q8TC59 973 aaKnown RBP11.77□□□□□ -0.53
CPSF4-210ENST00000469897 ARL8AQ96BM9 186 aa11.77□□□□□ -0.53
CPSF4-210ENST00000469897 ZBTB9Q96C00 473 aa11.77□□□□□ -0.53
CPSF4-210ENST00000469897 ZG16BQ96DA0 208 aa11.77□□□□□ -0.53
CPSF4-210ENST00000469897 DNAJA3Q96EY1 480 aa11.77□□□□□ -0.53
CPSF4-210ENST00000469897 SLC35G5Q96KT7 338 aa11.77□□□□□ -0.53
CPSF4-210ENST00000469897 ZNF300Q96RE9 604 aaPredicted RBP11.77□□□□□ -0.53
CPSF4-210ENST00000469897 EXD2Q9NVH0 621 aa11.77□□□□□ -0.53
CPSF4-210ENST00000469897 ASIC5Q9NY37 505 aa11.77□□□□□ -0.53
CPSF4-210ENST00000469897 FLNAP21333 2647 aaKnown RBP11.77□□□□□ -0.53
CPSF4-210ENST00000469897 PRSS51A0A1B0GVH4 220 aa11.76□□□□□ -0.53
CPSF4-210ENST00000469897 KIAA1324LA8MWY0 1029 aaPredicted RBP11.76□□□□□ -0.53
CPSF4-210ENST00000469897 OVOL3O00110 214 aa11.76□□□□□ -0.53
CPSF4-210ENST00000469897 SULT2B1O00204 365 aa11.76□□□□□ -0.53
CPSF4-210ENST00000469897 DNAJA2O60884 412 aa11.76□□□□□ -0.53
CPSF4-210ENST00000469897 SCN2BO60939 215 aa11.76□□□□□ -0.53
CPSF4-210ENST00000469897 TMCC2O75069 709 aa11.76□□□□□ -0.53
CPSF4-210ENST00000469897 BCAS1O75363 584 aaPredicted RBP11.76□□□□□ -0.53
CPSF4-210ENST00000469897 AK1P00568 194 aa11.76□□□□□ -0.53
CPSF4-210ENST00000469897 C1QCP02747 245 aa11.76□□□□□ -0.53
CPSF4-210ENST00000469897 DANCRP0C864 163 aa11.76□□□□□ -0.53
CPSF4-210ENST00000469897 TFPIP10646 304 aa11.76□□□□□ -0.53
CPSF4-210ENST00000469897 UQCRC2P22695 453 aa11.76□□□□□ -0.53
CPSF4-210ENST00000469897 RYKP34925 604 aa11.76□□□□□ -0.53
CPSF4-210ENST00000469897 CDKN1AP38936 164 aa11.76□□□□□ -0.53
CPSF4-210ENST00000469897 DIO1P49895 249 aa11.76□□□□□ -0.53
CPSF4-210ENST00000469897 ABCE1P61221 599 aaKnown RBP11.76□□□□□ -0.53
CPSF4-210ENST00000469897 PPP2R2BQ00005 443 aa11.76□□□□□ -0.53
CPSF4-210ENST00000469897 BSPH1Q075Z2 132 aa11.76□□□□□ -0.53
CPSF4-210ENST00000469897 STK11Q15831 433 aa11.76□□□□□ -0.53
CPSF4-210ENST00000469897 CLEC12BQ2HXU8 276 aa11.76□□□□□ -0.53
CPSF4-210ENST00000469897 SMU1Q2TAY7 513 aa11.76□□□□□ -0.53
CPSF4-210ENST00000469897 ZNF672Q499Z4 452 aaPredicted RBP11.76□□□□□ -0.53
CPSF4-210ENST00000469897 HEPHL1Q6MZM0 1159 aa11.76□□□□□ -0.53
CPSF4-210ENST00000469897 TMPPEQ6ZT21 453 aa11.76□□□□□ -0.53
CPSF4-210ENST00000469897 Q6ZT83 130 aa11.76□□□□□ -0.53
CPSF4-210ENST00000469897 ZNF100Q8IYN0 542 aa11.76□□□□□ -0.53
CPSF4-210ENST00000469897 MAPK1IP1LQ8NDC0 245 aa11.76□□□□□ -0.53
CPSF4-210ENST00000469897 OR8J2Q8NGG1 315 aa11.76□□□□□ -0.53
CPSF4-210ENST00000469897 AENQ8WTP8 325 aaKnown RBP11.76□□□□□ -0.53
CPSF4-210ENST00000469897 TMEM234Q8WY98 164 aa11.76□□□□□ -0.53
CPSF4-210ENST00000469897 ST8SIA1Q92185 356 aa11.76□□□□□ -0.53
CPSF4-210ENST00000469897 FBXW5Q969U6 566 aa11.76□□□□□ -0.53
CPSF4-210ENST00000469897 TRMT61AQ96FX7 289 aaKnown RBP11.76□□□□□ -0.53
CPSF4-210ENST00000469897 DPY30Q9C005 99 aa11.76□□□□□ -0.53
CPSF4-210ENST00000469897 ZNF350Q9GZX5 532 aa11.76□□□□□ -0.53
CPSF4-210ENST00000469897 CTPS2Q9NRF8 586 aa11.76□□□□□ -0.53
CPSF4-210ENST00000469897 ACER3Q9NUN7 267 aa11.76□□□□□ -0.53
CPSF4-210ENST00000469897 LIPT1Q9Y234 373 aa11.76□□□□□ -0.53
CPSF4-210ENST00000469897 ZNF724A8MTY0 619 aa11.75□□□□□ -0.53
CPSF4-210ENST00000469897 RNF223E7ERA6 249 aa11.75□□□□□ -0.53
CPSF4-210ENST00000469897 RAMP1O60894 148 aa11.75□□□□□ -0.53
CPSF4-210ENST00000469897 IGHV3-9P01782 118 aa11.75□□□□□ -0.53
CPSF4-210ENST00000469897 SERPINE1P05121 402 aa11.75□□□□□ -0.53
CPSF4-210ENST00000469897 FESP07332 822 aa11.75□□□□□ -0.53
CPSF4-210ENST00000469897 MYZAPP0CAP1 466 aa11.75□□□□□ -0.53
CPSF4-210ENST00000469897 PGCP20142 388 aa11.75□□□□□ -0.53
CPSF4-210ENST00000469897 CCNA2P20248 432 aa11.75□□□□□ -0.53
CPSF4-210ENST00000469897 PGM1P36871 562 aa11.75□□□□□ -0.53
CPSF4-210ENST00000469897 RPL14P50914 215 aaKnown RBP11.75□□□□□ -0.53
CPSF4-210ENST00000469897 FAPQ12884 760 aa11.75□□□□□ -0.53
CPSF4-210ENST00000469897 ANXA8L1Q5VT79 327 aa11.75□□□□□ -0.53
CPSF4-210ENST00000469897 TYW3Q6IPR3 259 aaKnown RBP11.75□□□□□ -0.53
CPSF4-210ENST00000469897 C3orf33Q6P1S2 294 aa11.75□□□□□ -0.53
CPSF4-210ENST00000469897 TNFAIP8L2Q6P589 184 aaPredicted RBP11.75□□□□□ -0.53
CPSF4-210ENST00000469897 EMBQ6PCB8 327 aa11.75□□□□□ -0.53
CPSF4-210ENST00000469897 SEZ6L2Q6UXD5 910 aa11.75□□□□□ -0.53
CPSF4-210ENST00000469897 GALNT5Q7Z7M9 940 aa11.75□□□□□ -0.53
CPSF4-210ENST00000469897 MTDHQ86UE4 582 aaKnown RBP11.75□□□□□ -0.53
CPSF4-210ENST00000469897 VPS37AQ8NEZ2 397 aa11.75□□□□□ -0.53
CPSF4-210ENST00000469897 KBTBD8Q8NFY9 601 aa11.75□□□□□ -0.53
CPSF4-210ENST00000469897 ZNF563Q8TA94 476 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms