RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 BABAM2Q9NXR7 383 aa17.62■□□□□ 0.41
VIM-203ENST00000469543 ZMIZ1Q9ULJ6 1067 aa17.62■□□□□ 0.41
VIM-203ENST00000469543 TMEM184BQ9Y519 407 aaPredicted RBP17.62■□□□□ 0.41
VIM-203ENST00000469543 A6NL46 340 aa17.61■□□□□ 0.41
VIM-203ENST00000469543 C4orf47A7E2U8 309 aa17.61■□□□□ 0.41
VIM-203ENST00000469543 J3QLW9 94 aa17.61■□□□□ 0.41
VIM-203ENST00000469543 GSTT2P0CG29 244 aa17.61■□□□□ 0.41
VIM-203ENST00000469543 GSTT2BP0CG30 244 aa17.61■□□□□ 0.41
VIM-203ENST00000469543 ZNF19P17023 458 aa17.61■□□□□ 0.41
VIM-203ENST00000469543 KRR1Q13601 381 aaKnown RBP17.61■□□□□ 0.41
VIM-203ENST00000469543 ALG10BQ5I7T1 473 aa17.61■□□□□ 0.41
VIM-203ENST00000469543 IDNKQ5T6J7 187 aa17.61■□□□□ 0.41
VIM-203ENST00000469543 Q8N402 240 aa17.61■□□□□ 0.41
VIM-203ENST00000469543 GATSQ8NAP1 163 aa17.61■□□□□ 0.41
VIM-203ENST00000469543 ZNRF4Q8WWF5 429 aa17.61■□□□□ 0.41
VIM-203ENST00000469543 STACQ99469 402 aa17.61■□□□□ 0.41
VIM-203ENST00000469543 MED18Q9BUE0 208 aa17.61■□□□□ 0.41
VIM-203ENST00000469543 WSB2Q9NYS7 404 aaPredicted RBP17.61■□□□□ 0.41
VIM-203ENST00000469543 SATB2Q9UPW6 733 aa17.61■□□□□ 0.41
VIM-203ENST00000469543 ADAM18Q9Y3Q7 739 aa17.61■□□□□ 0.41
VIM-203ENST00000469543 PRR23D1E9PI22 279 aaPredicted RBP17.61■□□□□ 0.41
VIM-203ENST00000469543 GTPBP1O00178 669 aaKnown RBP17.61■□□□□ 0.41
VIM-203ENST00000469543 RNF13O43567 381 aa17.61■□□□□ 0.41
VIM-203ENST00000469543 PRR23D2P0DMB1 279 aaPredicted RBP17.61■□□□□ 0.41
VIM-203ENST00000469543 DRD5P21918 477 aa17.61■□□□□ 0.41
VIM-203ENST00000469543 IFITM2Q01629 132 aa17.61■□□□□ 0.41
VIM-203ENST00000469543 OR4K13Q8NH42 304 aa17.61■□□□□ 0.41
VIM-203ENST00000469543 ZDHHC1Q8WTX9 485 aa17.61■□□□□ 0.41
VIM-203ENST00000469543 DNAJA3Q96EY1 480 aa17.61■□□□□ 0.41
VIM-203ENST00000469543 GSDMCQ9BYG8 508 aa17.61■□□□□ 0.41
VIM-203ENST00000469543 NEK6Q9HC98 313 aa17.61■□□□□ 0.41
VIM-203ENST00000469543 ARID1BQ8NFD5 2236 aaPredicted RBP17.61■□□□□ 0.41
VIM-203ENST00000469543 MPDZO75970 2070 aa17.6■□□□□ 0.41
VIM-203ENST00000469543 LRP4O75096 1905 aa17.6■□□□□ 0.41
VIM-203ENST00000469543 A0A0B4J2E0 115 aa17.6■□□□□ 0.41
VIM-203ENST00000469543 A0A1B0GX12 115 aa17.6■□□□□ 0.41
VIM-203ENST00000469543 HTR3EA5X5Y0 456 aa17.6■□□□□ 0.41
VIM-203ENST00000469543 PRAMEF26H0Y7S4 382 aa17.6■□□□□ 0.41
VIM-203ENST00000469543 PTP4A3O75365 173 aa17.6■□□□□ 0.41
VIM-203ENST00000469543 STX4Q12846 297 aa17.6■□□□□ 0.41
VIM-203ENST00000469543 ATAD3CQ5T2N8 411 aa17.6■□□□□ 0.41
VIM-203ENST00000469543 LYPD4Q6UWN0 246 aa17.6■□□□□ 0.41
VIM-203ENST00000469543 NPSR1Q6W5P4 371 aa17.6■□□□□ 0.41
VIM-203ENST00000469543 MCATQ8IVS2 390 aaKnown RBP17.6■□□□□ 0.41
VIM-203ENST00000469543 SDR9C7Q8NEX9 313 aa17.6■□□□□ 0.41
VIM-203ENST00000469543 OR5W2Q8NH69 310 aa17.6■□□□□ 0.41
VIM-203ENST00000469543 C4orf36Q96KX1 117 aa17.6■□□□□ 0.41
VIM-203ENST00000469543 MMP17Q9ULZ9 603 aa17.6■□□□□ 0.41
VIM-203ENST00000469543 ENTPD2Q9Y5L3 495 aa17.6■□□□□ 0.41
VIM-203ENST00000469543 N6AMT1Q9Y5N5 214 aa17.6■□□□□ 0.41
VIM-203ENST00000469543 SERPINI2O75830 405 aa17.6■□□□□ 0.41
VIM-203ENST00000469543 NKX2-2O95096 273 aa17.6■□□□□ 0.41
VIM-203ENST00000469543 SDHBP21912 280 aa17.6■□□□□ 0.41
VIM-203ENST00000469543 RABIFP47224 123 aa17.6■□□□□ 0.41
VIM-203ENST00000469543 GARNL3Q5VVW2 1013 aa17.6■□□□□ 0.41
VIM-203ENST00000469543 TMPRSS11FQ6ZWK6 438 aa17.6■□□□□ 0.41
VIM-203ENST00000469543 RAB43Q86YS6 212 aa17.6■□□□□ 0.41
VIM-203ENST00000469543 CDK20Q8IZL9 346 aa17.6■□□□□ 0.41
VIM-203ENST00000469543 ZNF655Q8N720 491 aaPredicted RBP17.6■□□□□ 0.41
VIM-203ENST00000469543 OR52N1Q8NH53 320 aa17.6■□□□□ 0.41
VIM-203ENST00000469543 RELTQ969Z4 430 aa17.6■□□□□ 0.41
VIM-203ENST00000469543 TP63Q9H3D4 680 aaPredicted RBP17.6■□□□□ 0.41
VIM-203ENST00000469543 PPP1R3EQ9H7J1 279 aa17.6■□□□□ 0.41
VIM-203ENST00000469543 FOLH1BQ9HBA9 442 aa17.6■□□□□ 0.41
VIM-203ENST00000469543 TMEM27Q9HBJ8 222 aa17.6■□□□□ 0.41
VIM-203ENST00000469543 ISYNA1Q9NPH2 558 aa17.6■□□□□ 0.41
VIM-203ENST00000469543 CMC2Q9NRP2 79 aa17.6■□□□□ 0.41
VIM-203ENST00000469543 DNAJB12Q9NXW2 375 aaKnown RBP17.6■□□□□ 0.41
VIM-203ENST00000469543 CLEC4AQ9UMR7 237 aa17.6■□□□□ 0.41
VIM-203ENST00000469543 HS3ST3A1Q9Y663 406 aa17.6■□□□□ 0.41
VIM-203ENST00000469543 FOXS1O43638 330 aa17.59■□□□□ 0.41
VIM-203ENST00000469543 GMFGO60234 142 aa17.59■□□□□ 0.41
VIM-203ENST00000469543 PAHP00439 452 aa17.59■□□□□ 0.41
VIM-203ENST00000469543 SLC35E2P0CK97 266 aa17.59■□□□□ 0.41
VIM-203ENST00000469543 SLC2A2P11168 524 aaPredicted RBP17.59■□□□□ 0.41
VIM-203ENST00000469543 KIRREL2Q6UWL6 708 aa17.59■□□□□ 0.41
VIM-203ENST00000469543 PAMR1Q6UXH9 720 aa17.59■□□□□ 0.41
VIM-203ENST00000469543 OOSP2Q86WS3 158 aa17.59■□□□□ 0.41
VIM-203ENST00000469543 FAM181AQ8N9Y4 354 aa17.59■□□□□ 0.41
VIM-203ENST00000469543 OR5J2Q8NH18 312 aa17.59■□□□□ 0.41
VIM-203ENST00000469543 OR4C6Q8NH72 309 aa17.59■□□□□ 0.41
VIM-203ENST00000469543 ZMYND19Q96E35 227 aaPredicted RBP17.59■□□□□ 0.41
VIM-203ENST00000469543 ZNF559Q9BR84 538 aa17.59■□□□□ 0.41
VIM-203ENST00000469543 NUFIP1Q9UHK0 495 aaKnown RBP17.59■□□□□ 0.41
VIM-203ENST00000469543 MAU2Q9Y6X3 613 aa17.59■□□□□ 0.41
VIM-203ENST00000469543 RP1P56715 2156 aa17.59■□□□□ 0.41
VIM-203ENST00000469543 CCDC182A6NF36 153 aa17.59■□□□□ 0.41
VIM-203ENST00000469543 ELK1P19419 428 aa17.59■□□□□ 0.41
VIM-203ENST00000469543 RNF113BQ8IZP6 322 aaKnown RBP17.59■□□□□ 0.41
VIM-203ENST00000469543 ARHGEF39Q8N4T4 335 aa17.59■□□□□ 0.41
VIM-203ENST00000469543 OR52E2Q8NGJ4 325 aa17.59■□□□□ 0.41
VIM-203ENST00000469543 CHAC2Q8WUX2 184 aa17.59■□□□□ 0.41
VIM-203ENST00000469543 FYTTD1Q96QD9 318 aaKnown RBP17.59■□□□□ 0.41
VIM-203ENST00000469543 LRRC61Q9BV99 259 aa17.59■□□□□ 0.41
VIM-203ENST00000469543 ADGRL4Q9HBW9 690 aa17.59■□□□□ 0.41
VIM-203ENST00000469543 MCCC2Q9HCC0 563 aa17.59■□□□□ 0.41
VIM-203ENST00000469543 KRCC1Q9NPI7 259 aaPredicted RBP17.59■□□□□ 0.41
VIM-203ENST00000469543 TTC36A6NLP5 189 aa17.58■□□□□ 0.41
VIM-203ENST00000469543 B4DXG7 233 aa17.58■□□□□ 0.41
VIM-203ENST00000469543 PSMD9O00233 223 aa17.58■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms