RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 SOSTQ9BQB4 213 aa8.25□□□□□ -1.09
SYNE1-217ENST00000466159 PPP1R3EQ9H7J1 279 aa8.25□□□□□ -1.09
SYNE1-217ENST00000466159 NEK6Q9HC98 313 aa8.25□□□□□ -1.09
SYNE1-217ENST00000466159 DNAJB12Q9NXW2 375 aaKnown RBP8.25□□□□□ -1.09
SYNE1-217ENST00000466159 POLHQ9Y253 713 aa8.25□□□□□ -1.09
SYNE1-217ENST00000466159 TMEM5Q9Y2B1 443 aa8.25□□□□□ -1.09
SYNE1-217ENST00000466159 HTR3EA5X5Y0 456 aa8.25□□□□□ -1.09
SYNE1-217ENST00000466159 SLC22A31A6NKX4 558 aa8.25□□□□□ -1.09
SYNE1-217ENST00000466159 SEC14L5O43304 696 aa8.25□□□□□ -1.09
SYNE1-217ENST00000466159 RGS9O75916 674 aaPredicted RBP8.25□□□□□ -1.09
SYNE1-217ENST00000466159 HOXD12P35452 270 aa8.25□□□□□ -1.09
SYNE1-217ENST00000466159 KIR2DL3P43628 341 aa8.25□□□□□ -1.09
SYNE1-217ENST00000466159 EVX1P49640 407 aa8.25□□□□□ -1.09
SYNE1-217ENST00000466159 MAZP56270 477 aaKnown RBP8.25□□□□□ -1.09
SYNE1-217ENST00000466159 BTG2P78543 158 aa8.25□□□□□ -1.09
SYNE1-217ENST00000466159 E2F1Q01094 437 aa8.25□□□□□ -1.09
SYNE1-217ENST00000466159 STX4Q12846 297 aa8.25□□□□□ -1.09
SYNE1-217ENST00000466159 FHL1Q13642 323 aa8.25□□□□□ -1.09
SYNE1-217ENST00000466159 IL18Q14116 193 aa8.25□□□□□ -1.09
SYNE1-217ENST00000466159 NDUFAF6Q330K2 333 aa8.25□□□□□ -1.09
SYNE1-217ENST00000466159 ATAD3CQ5T2N8 411 aa8.25□□□□□ -1.09
SYNE1-217ENST00000466159 RPL13AP3Q6NVV1 102 aa8.25□□□□□ -1.09
SYNE1-217ENST00000466159 ARL9Q6T311 187 aa8.25□□□□□ -1.09
SYNE1-217ENST00000466159 RPTNQ6XPR3 784 aa8.25□□□□□ -1.09
SYNE1-217ENST00000466159 CADM2Q8N3J6 435 aa8.25□□□□□ -1.09
SYNE1-217ENST00000466159 Q8N402 240 aa8.25□□□□□ -1.09
SYNE1-217ENST00000466159 FAM160A2Q8N612 972 aaPredicted RBP8.25□□□□□ -1.09
SYNE1-217ENST00000466159 C19orf47Q8N9M1 422 aaKnown RBP8.25□□□□□ -1.09
SYNE1-217ENST00000466159 RCBTB1Q8NDN9 531 aa8.25□□□□□ -1.09
SYNE1-217ENST00000466159 OR5W2Q8NH69 310 aa8.25□□□□□ -1.09
SYNE1-217ENST00000466159 KIAA1143Q96AT1 154 aaPredicted RBP8.25□□□□□ -1.09
SYNE1-217ENST00000466159 EFHD2Q96C19 240 aaPredicted RBP8.25□□□□□ -1.09
SYNE1-217ENST00000466159 ADGRL4Q9HBW9 690 aa8.25□□□□□ -1.09
SYNE1-217ENST00000466159 B3GAT2Q9NPZ5 323 aa8.25□□□□□ -1.09
SYNE1-217ENST00000466159 TRPV5Q9NQA5 729 aa8.25□□□□□ -1.09
SYNE1-217ENST00000466159 POLE3Q9NRF9 147 aa8.25□□□□□ -1.09
SYNE1-217ENST00000466159 C14orf105Q9NVL8 296 aa8.25□□□□□ -1.09
SYNE1-217ENST00000466159 C2orf42Q9NWW7 574 aa8.25□□□□□ -1.09
SYNE1-217ENST00000466159 NPAP1Q9NZP6 1156 aa8.25□□□□□ -1.09
SYNE1-217ENST00000466159 ZMIZ1Q9ULJ6 1067 aa8.25□□□□□ -1.09
SYNE1-217ENST00000466159 SLC35A3Q9Y2D2 325 aa8.25□□□□□ -1.09
SYNE1-217ENST00000466159 RIIAD1A6NNX1 92 aa8.24□□□□□ -1.09
SYNE1-217ENST00000466159 C2CD4DB7Z1M9 353 aa8.24□□□□□ -1.09
SYNE1-217ENST00000466159 FOXS1O43638 330 aa8.24□□□□□ -1.09
SYNE1-217ENST00000466159 PRKNO60260 465 aaPredicted RBP8.24□□□□□ -1.09
SYNE1-217ENST00000466159 HCN1O60741 890 aa8.24□□□□□ -1.09
SYNE1-217ENST00000466159 KRT8P05787 483 aa8.24□□□□□ -1.09
SYNE1-217ENST00000466159 SBK2P0C263 348 aa8.24□□□□□ -1.09
SYNE1-217ENST00000466159 GAAP10253 952 aa8.24□□□□□ -1.09
SYNE1-217ENST00000466159 SLC2A2P11168 524 aaPredicted RBP8.24□□□□□ -1.09
SYNE1-217ENST00000466159 CHRNB1P11230 501 aa8.24□□□□□ -1.09
SYNE1-217ENST00000466159 SLC2A5P22732 501 aa8.24□□□□□ -1.09
SYNE1-217ENST00000466159 SHC1P29353 583 aa8.24□□□□□ -1.09
SYNE1-217ENST00000466159 BDH1Q02338 343 aa8.24□□□□□ -1.09
SYNE1-217ENST00000466159 CRYZQ08257 329 aaKnown RBP8.24□□□□□ -1.09
SYNE1-217ENST00000466159 ZNF267Q14586 743 aaPredicted RBP8.24□□□□□ -1.09
SYNE1-217ENST00000466159 SF3B4Q15427 424 aaKnown RBP eCLIP8.24□□□□□ -1.09
SYNE1-217ENST00000466159 ZNHIT3Q15649 155 aaPredicted RBP8.24□□□□□ -1.09
SYNE1-217ENST00000466159 CCDC92Q53HC0 331 aaPredicted RBP8.24□□□□□ -1.09
SYNE1-217ENST00000466159 NPSR1Q6W5P4 371 aa8.24□□□□□ -1.09
SYNE1-217ENST00000466159 METTL27Q8N6F8 245 aaPredicted RBP8.24□□□□□ -1.09
SYNE1-217ENST00000466159 SMRP1Q8NCR6 262 aa8.24□□□□□ -1.09
SYNE1-217ENST00000466159 RLN3Q8WXF3 142 aa8.24□□□□□ -1.09
SYNE1-217ENST00000466159 PMM1Q92871 262 aa8.24□□□□□ -1.09
SYNE1-217ENST00000466159 VSTM2LQ96N03 204 aa8.24□□□□□ -1.09
SYNE1-217ENST00000466159 CTRCQ99895 268 aa8.24□□□□□ -1.09
SYNE1-217ENST00000466159 LMF2Q9BU23 707 aaKnown RBP8.24□□□□□ -1.09
SYNE1-217ENST00000466159 ZNF426Q9BUY5 554 aa8.24□□□□□ -1.09
SYNE1-217ENST00000466159 TTTY10Q9BZA0 68 aa8.24□□□□□ -1.09
SYNE1-217ENST00000466159 MCCC2Q9HCC0 563 aa8.24□□□□□ -1.09
SYNE1-217ENST00000466159 TRIM36Q9NQ86 728 aa8.24□□□□□ -1.09
SYNE1-217ENST00000466159 ZNF221Q9UK13 617 aa8.24□□□□□ -1.09
SYNE1-217ENST00000466159 FBXL21Q9UKT6 434 aa8.24□□□□□ -1.09
SYNE1-217ENST00000466159 B4DXG7 233 aa8.24□□□□□ -1.09
SYNE1-217ENST00000466159 LRRN3E7EW58 273 aa8.24□□□□□ -1.09
SYNE1-217ENST00000466159 J3QLW9 94 aa8.24□□□□□ -1.09
SYNE1-217ENST00000466159 PEPDP12955 493 aa8.24□□□□□ -1.09
SYNE1-217ENST00000466159 ZNF19P17023 458 aa8.24□□□□□ -1.09
SYNE1-217ENST00000466159 ZNF24P17028 368 aa8.24□□□□□ -1.09
SYNE1-217ENST00000466159 ZNF3P17036 446 aa8.24□□□□□ -1.09
SYNE1-217ENST00000466159 RCVRNP35243 200 aa8.24□□□□□ -1.09
SYNE1-217ENST00000466159 HCCSP53701 268 aa8.24□□□□□ -1.09
SYNE1-217ENST00000466159 OR12D2P58182 307 aa8.24□□□□□ -1.09
SYNE1-217ENST00000466159 ZNF85Q03923 595 aa8.24□□□□□ -1.09
SYNE1-217ENST00000466159 SLC3A1Q07837 685 aa8.24□□□□□ -1.09
SYNE1-217ENST00000466159 PRTGQ2VWP7 1150 aa8.24□□□□□ -1.09
SYNE1-217ENST00000466159 IDNKQ5T6J7 187 aa8.24□□□□□ -1.09
SYNE1-217ENST00000466159 KIRREL2Q6UWL6 708 aa8.24□□□□□ -1.09
SYNE1-217ENST00000466159 RTL4Q6ZR62 310 aa8.24□□□□□ -1.09
SYNE1-217ENST00000466159 SSX6Q7RTT6 188 aa8.24□□□□□ -1.09
SYNE1-217ENST00000466159 GLCCI1Q86VQ1 547 aa8.24□□□□□ -1.09
SYNE1-217ENST00000466159 GRAMD2AQ8IUY3 354 aa8.24□□□□□ -1.09
SYNE1-217ENST00000466159 RDH10Q8IZV5 341 aa8.24□□□□□ -1.09
SYNE1-217ENST00000466159 RFLNBQ8N5W9 214 aa8.24□□□□□ -1.09
SYNE1-217ENST00000466159 LRRC17Q8N6Y2 441 aa8.24□□□□□ -1.09
SYNE1-217ENST00000466159 SCAIQ8N9R8 606 aa8.24□□□□□ -1.09
SYNE1-217ENST00000466159 C17orf47Q8NEP4 570 aa8.24□□□□□ -1.09
SYNE1-217ENST00000466159 CAPSLQ8WWF8 208 aa8.24□□□□□ -1.09
SYNE1-217ENST00000466159 SMPDL3BQ92485 455 aa8.24□□□□□ -1.09
SYNE1-217ENST00000466159 ZNF486Q96H40 463 aaPredicted RBP8.24□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms