RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 ABCD4O14678 606 aa11.76□□□□□ -0.53
HMGB3-204ENST00000448905 PIP5K1BO14986 540 aa11.76□□□□□ -0.53
HMGB3-204ENST00000448905 RAMP1O60894 148 aa11.76□□□□□ -0.53
HMGB3-204ENST00000448905 STX11O75558 287 aa11.76□□□□□ -0.53
HMGB3-204ENST00000448905 SLU7O95391 586 aaKnown RBP11.76□□□□□ -0.53
HMGB3-204ENST00000448905 AGR2O95994 175 aa11.76□□□□□ -0.53
HMGB3-204ENST00000448905 CSTAP01040 98 aa11.76□□□□□ -0.53
HMGB3-204ENST00000448905 CD8AP01732 235 aa11.76□□□□□ -0.53
HMGB3-204ENST00000448905 TFPIP10646 304 aa11.76□□□□□ -0.53
HMGB3-204ENST00000448905 MATN1P21941 496 aa11.76□□□□□ -0.53
HMGB3-204ENST00000448905 PTAFRP25105 342 aa11.76□□□□□ -0.53
HMGB3-204ENST00000448905 APOBEC1P41238 236 aaKnown RBP11.76□□□□□ -0.53
HMGB3-204ENST00000448905 NUDT6P53370 316 aa11.76□□□□□ -0.53
HMGB3-204ENST00000448905 CDH11P55287 796 aa11.76□□□□□ -0.53
HMGB3-204ENST00000448905 KRTAP1-1Q07627 177 aa11.76□□□□□ -0.53
HMGB3-204ENST00000448905 MAD2L1Q13257 205 aaPredicted RBP11.76□□□□□ -0.53
HMGB3-204ENST00000448905 PDK3Q15120 406 aa11.76□□□□□ -0.53
HMGB3-204ENST00000448905 TIGD2Q4W5G0 525 aa11.76□□□□□ -0.53
HMGB3-204ENST00000448905 DDX59Q5T1V6 619 aaKnown RBP eCLIP11.76□□□□□ -0.53
HMGB3-204ENST00000448905 IL23RQ5VWK5 629 aa11.76□□□□□ -0.53
HMGB3-204ENST00000448905 FBXW9Q5XUX1 488 aa11.76□□□□□ -0.53
HMGB3-204ENST00000448905 OR7E24Q6IFN5 339 aa11.76□□□□□ -0.53
HMGB3-204ENST00000448905 SLC22A25Q6T423 547 aa11.76□□□□□ -0.53
HMGB3-204ENST00000448905 CLEC2AQ6UVW9 174 aa11.76□□□□□ -0.53
HMGB3-204ENST00000448905 EIF3MQ7L2H7 374 aaKnown RBP11.76□□□□□ -0.53
HMGB3-204ENST00000448905 MTDHQ86UE4 582 aaKnown RBP11.76□□□□□ -0.53
HMGB3-204ENST00000448905 DTX2Q86UW9 622 aa11.76□□□□□ -0.53
HMGB3-204ENST00000448905 FBXL14Q8N1E6 418 aa11.76□□□□□ -0.53
HMGB3-204ENST00000448905 FNDC5Q8NAU1 212 aa11.76□□□□□ -0.53
HMGB3-204ENST00000448905 KBTBD8Q8NFY9 601 aa11.76□□□□□ -0.53
HMGB3-204ENST00000448905 SFXN5Q8TD22 340 aa11.76□□□□□ -0.53
HMGB3-204ENST00000448905 SLC25A43Q8WUT9 341 aaPredicted RBP11.76□□□□□ -0.53
HMGB3-204ENST00000448905 SDF2Q99470 211 aa11.76□□□□□ -0.53
HMGB3-204ENST00000448905 KLHDC3Q9BQ90 382 aa11.76□□□□□ -0.53
HMGB3-204ENST00000448905 THUMPD3Q9BV44 507 aaKnown RBP11.76□□□□□ -0.53
HMGB3-204ENST00000448905 BHLHE41Q9C0J9 482 aaPredicted RBP11.76□□□□□ -0.53
HMGB3-204ENST00000448905 NMUR2Q9GZQ4 415 aa11.76□□□□□ -0.53
HMGB3-204ENST00000448905 C12orf65Q9H3J6 166 aaKnown RBP11.76□□□□□ -0.53
HMGB3-204ENST00000448905 CXorf36Q9H7Y0 433 aa11.76□□□□□ -0.53
HMGB3-204ENST00000448905 COQ10BQ9H8M1 238 aa11.76□□□□□ -0.53
HMGB3-204ENST00000448905 ANKZF1Q9H8Y5 726 aa11.76□□□□□ -0.53
HMGB3-204ENST00000448905 GPATCH2Q9NW75 528 aa11.76□□□□□ -0.53
HMGB3-204ENST00000448905 PRSS50Q9UI38 385 aa11.76□□□□□ -0.53
HMGB3-204ENST00000448905 B3GALT5Q9Y2C3 310 aa11.76□□□□□ -0.53
HMGB3-204ENST00000448905 NOSIPQ9Y314 301 aaKnown RBP11.76□□□□□ -0.53
HMGB3-204ENST00000448905 ARID1AO14497 2285 aa11.76□□□□□ -0.53
HMGB3-204ENST00000448905 JMJD1CQ15652 2540 aa11.76□□□□□ -0.53
HMGB3-204ENST00000448905 DSCAMO60469 2012 aa11.76□□□□□ -0.53
HMGB3-204ENST00000448905 NPIPA5A0A0B4J1W7 369 aa11.75□□□□□ -0.53
HMGB3-204ENST00000448905 NPIPA7E9PJI5 369 aa11.75□□□□□ -0.53
HMGB3-204ENST00000448905 NPIPB9F8W1W9 429 aa11.75□□□□□ -0.53
HMGB3-204ENST00000448905 ETV2O00321 342 aaPredicted RBP11.75□□□□□ -0.53
HMGB3-204ENST00000448905 ANKRD28O15084 1053 aa11.75□□□□□ -0.53
HMGB3-204ENST00000448905 OIP5O43482 229 aa11.75□□□□□ -0.53
HMGB3-204ENST00000448905 PGM3O95394 542 aa11.75□□□□□ -0.53
HMGB3-204ENST00000448905 C6orf47O95873 294 aa11.75□□□□□ -0.53
HMGB3-204ENST00000448905 SHBGP04278 402 aa11.75□□□□□ -0.53
HMGB3-204ENST00000448905 NPIPA8P0DM63 369 aa11.75□□□□□ -0.53
HMGB3-204ENST00000448905 SERPINB5P36952 375 aa11.75□□□□□ -0.53
HMGB3-204ENST00000448905 CLK1P49759 484 aaKnown RBP11.75□□□□□ -0.53
HMGB3-204ENST00000448905 DIO1P49895 249 aa11.75□□□□□ -0.53
HMGB3-204ENST00000448905 RNF144AP50876 292 aaPredicted RBP11.75□□□□□ -0.53
HMGB3-204ENST00000448905 C21orf58P58505 322 aa11.75□□□□□ -0.53
HMGB3-204ENST00000448905 MERTKQ12866 999 aa11.75□□□□□ -0.53
HMGB3-204ENST00000448905 GPR68Q15743 365 aa11.75□□□□□ -0.53
HMGB3-204ENST00000448905 PGS1Q32NB8 556 aa11.75□□□□□ -0.53
HMGB3-204ENST00000448905 UGT3A2Q3SY77 523 aa11.75□□□□□ -0.53
HMGB3-204ENST00000448905 C6orf136Q5SQH8 315 aa11.75□□□□□ -0.53
HMGB3-204ENST00000448905 PDZK1Q5T2W1 519 aa11.75□□□□□ -0.53
HMGB3-204ENST00000448905 ATAD3BQ5T9A4 648 aa11.75□□□□□ -0.53
HMGB3-204ENST00000448905 C6orf120Q7Z4R8 191 aa11.75□□□□□ -0.53
HMGB3-204ENST00000448905 C4orf33Q8N1A6 199 aa11.75□□□□□ -0.53
HMGB3-204ENST00000448905 VPS37AQ8NEZ2 397 aa11.75□□□□□ -0.53
HMGB3-204ENST00000448905 ZNF563Q8TA94 476 aa11.75□□□□□ -0.53
HMGB3-204ENST00000448905 OIT3Q8WWZ8 545 aa11.75□□□□□ -0.53
HMGB3-204ENST00000448905 APH1AQ96BI3 265 aa11.75□□□□□ -0.53
HMGB3-204ENST00000448905 OR7D2Q96RA2 312 aa11.75□□□□□ -0.53
HMGB3-204ENST00000448905 DHRS9Q9BPW9 319 aa11.75□□□□□ -0.53
HMGB3-204ENST00000448905 DUSP26Q9BV47 211 aa11.75□□□□□ -0.53
HMGB3-204ENST00000448905 CBLN4Q9NTU7 201 aa11.75□□□□□ -0.53
HMGB3-204ENST00000448905 ACER3Q9NUN7 267 aa11.75□□□□□ -0.53
HMGB3-204ENST00000448905 PARPBPQ9NWS1 579 aa11.75□□□□□ -0.53
HMGB3-204ENST00000448905 ASB6Q9NWX5 421 aa11.75□□□□□ -0.53
HMGB3-204ENST00000448905 GDF2Q9UK05 429 aaPredicted RBP11.75□□□□□ -0.53
HMGB3-204ENST00000448905 CDC42EP3Q9UKI2 254 aa11.75□□□□□ -0.53
HMGB3-204ENST00000448905 KCNE3Q9Y6H6 103 aa11.75□□□□□ -0.53
HMGB3-204ENST00000448905 PCNX3Q9H6A9 2034 aa11.74□□□□□ -0.53
HMGB3-204ENST00000448905 TLDC2A0PJX2 215 aa11.74□□□□□ -0.53
HMGB3-204ENST00000448905 FAM234BA2RU67 622 aa11.74□□□□□ -0.53
HMGB3-204ENST00000448905 SHISA9B4DS77 424 aa11.74□□□□□ -0.53
HMGB3-204ENST00000448905 SMAD9O15198 467 aaKnown RBP11.74□□□□□ -0.53
HMGB3-204ENST00000448905 MRPL33O75394 65 aaKnown RBP11.74□□□□□ -0.53
HMGB3-204ENST00000448905 THBS1P07996 1170 aa11.74□□□□□ -0.53
HMGB3-204ENST00000448905 DHRS4L1P0CG22 281 aa11.74□□□□□ -0.53
HMGB3-204ENST00000448905 IGHV1-2P23083 117 aa11.74□□□□□ -0.53
HMGB3-204ENST00000448905 ALDH3A1P30838 453 aa11.74□□□□□ -0.53
HMGB3-204ENST00000448905 TTKP33981 857 aa11.74□□□□□ -0.53
HMGB3-204ENST00000448905 SOAT1P35610 550 aa11.74□□□□□ -0.53
HMGB3-204ENST00000448905 FABP6P51161 128 aa11.74□□□□□ -0.53
HMGB3-204ENST00000448905 SESN3P58005 492 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms