RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 FRS3O43559 492 aa11.24□□□□□ -0.61
SKA1-203ENST00000417656 PRG2P13727 222 aa11.24□□□□□ -0.61
SKA1-203ENST00000417656 PRKAR1BP31321 381 aa11.24□□□□□ -0.61
SKA1-203ENST00000417656 SFTPDP35247 375 aa11.24□□□□□ -0.61
SKA1-203ENST00000417656 SLC7A2P52569 658 aa11.24□□□□□ -0.61
SKA1-203ENST00000417656 CLDN15P56746 228 aa11.24□□□□□ -0.61
SKA1-203ENST00000417656 PMPCAQ10713 525 aa11.24□□□□□ -0.61
SKA1-203ENST00000417656 SELENBP1Q13228 472 aa11.24□□□□□ -0.61
SKA1-203ENST00000417656 ART3Q13508 389 aa11.24□□□□□ -0.61
SKA1-203ENST00000417656 BCL2A1Q16548 175 aa11.24□□□□□ -0.61
SKA1-203ENST00000417656 VMACQ2NL98 169 aa11.24□□□□□ -0.61
SKA1-203ENST00000417656 SLC25A53Q5H9E4 307 aa11.24□□□□□ -0.61
SKA1-203ENST00000417656 NSUN5P2Q63ZY6 315 aa11.24□□□□□ -0.61
SKA1-203ENST00000417656 FAM91A1Q658Y4 838 aa11.24□□□□□ -0.61
SKA1-203ENST00000417656 TMEM211Q6ICI0 200 aa11.24□□□□□ -0.61
SKA1-203ENST00000417656 C8orf82Q6P1X6 216 aaPredicted RBP11.24□□□□□ -0.61
SKA1-203ENST00000417656 POMZP3Q6PJE2 187 aa11.24□□□□□ -0.61
SKA1-203ENST00000417656 DHRS4L2Q6PKH6 230 aa11.24□□□□□ -0.61
SKA1-203ENST00000417656 HACD2Q6Y1H2 254 aa11.24□□□□□ -0.61
SKA1-203ENST00000417656 PLEKHM3Q6ZWE6 761 aa11.24□□□□□ -0.61
SKA1-203ENST00000417656 MRGPRGQ86SM5 289 aa11.24□□□□□ -0.61
SKA1-203ENST00000417656 GRAMD2AQ8IUY3 354 aa11.24□□□□□ -0.61
SKA1-203ENST00000417656 LACC1Q8IV20 430 aa11.24□□□□□ -0.61
SKA1-203ENST00000417656 ZNF440Q8IYI8 595 aa11.24□□□□□ -0.61
SKA1-203ENST00000417656 ZPLD1Q8TCW7 415 aa11.24□□□□□ -0.61
SKA1-203ENST00000417656 TMEM234Q8WY98 164 aa11.24□□□□□ -0.61
SKA1-203ENST00000417656 REXO5Q96IC2 774 aaKnown RBP11.24□□□□□ -0.61
SKA1-203ENST00000417656 ZNF583Q96ND8 569 aa11.24□□□□□ -0.61
SKA1-203ENST00000417656 ZNF607Q96SK3 696 aa11.24□□□□□ -0.61
SKA1-203ENST00000417656 KCNK17Q96T54 332 aa11.24□□□□□ -0.61
SKA1-203ENST00000417656 SPATA5L1Q9BVQ7 753 aa11.24□□□□□ -0.61
SKA1-203ENST00000417656 RSPO3Q9BXY4 272 aaPredicted RBP11.24□□□□□ -0.61
SKA1-203ENST00000417656 CLCF1Q9UBD9 225 aa11.24□□□□□ -0.61
SKA1-203ENST00000417656 ZNF232Q9UNY5 417 aa11.24□□□□□ -0.61
SKA1-203ENST00000417656 A0A0G2JNJ9 132 aa11.23□□□□□ -0.61
SKA1-203ENST00000417656 NME4O00746 187 aa11.23□□□□□ -0.61
SKA1-203ENST00000417656 NDUFAB1O14561 156 aa11.23□□□□□ -0.61
SKA1-203ENST00000417656 EIF1AYO14602 144 aaKnown RBP11.23□□□□□ -0.61
SKA1-203ENST00000417656 EFNA2O43921 213 aa11.23□□□□□ -0.61
SKA1-203ENST00000417656 TPST1O60507 370 aa11.23□□□□□ -0.61
SKA1-203ENST00000417656 GCM2O75603 506 aaPredicted RBP11.23□□□□□ -0.61
SKA1-203ENST00000417656 EPPINO95925 133 aa11.23□□□□□ -0.61
SKA1-203ENST00000417656 HOXD4P09016 255 aaPredicted RBP11.23□□□□□ -0.61
SKA1-203ENST00000417656 GP1BBP13224 206 aa11.23□□□□□ -0.61
SKA1-203ENST00000417656 UQCRBP14927 111 aa11.23□□□□□ -0.61
SKA1-203ENST00000417656 ME2P23368 584 aa11.23□□□□□ -0.61
SKA1-203ENST00000417656 ADH6P28332 368 aa11.23□□□□□ -0.61
SKA1-203ENST00000417656 IDH2P48735 452 aaKnown RBP11.23□□□□□ -0.61
SKA1-203ENST00000417656 SMSP52788 366 aa11.23□□□□□ -0.61
SKA1-203ENST00000417656 RAC1P63000 192 aa11.23□□□□□ -0.61
SKA1-203ENST00000417656 HOXC5Q00444 222 aa11.23□□□□□ -0.61
SKA1-203ENST00000417656 DMTNQ08495 405 aa11.23□□□□□ -0.61
SKA1-203ENST00000417656 MERTKQ12866 999 aa11.23□□□□□ -0.61
SKA1-203ENST00000417656 CDSNQ15517 529 aa11.23□□□□□ -0.61
SKA1-203ENST00000417656 CTU2Q2VPK5 515 aaKnown RBP11.23□□□□□ -0.61
SKA1-203ENST00000417656 GLIPR1L2Q4G1C9 344 aa11.23□□□□□ -0.61
SKA1-203ENST00000417656 ERICH5Q6P6B1 374 aa11.23□□□□□ -0.61
SKA1-203ENST00000417656 ARMC8Q8IUR7 673 aa11.23□□□□□ -0.61
SKA1-203ENST00000417656 CCDC71Q8IV32 467 aaPredicted RBP11.23□□□□□ -0.61
SKA1-203ENST00000417656 SLC30A8Q8IWU4 369 aa11.23□□□□□ -0.61
SKA1-203ENST00000417656 SLC15A3Q8IY34 581 aa11.23□□□□□ -0.61
SKA1-203ENST00000417656 ZNF808Q8N4W9 903 aaPredicted RBP11.23□□□□□ -0.61
SKA1-203ENST00000417656 FITM2Q8N6M3 262 aa11.23□□□□□ -0.61
SKA1-203ENST00000417656 C9orf106Q8NAJ2 232 aa11.23□□□□□ -0.61
SKA1-203ENST00000417656 SMYD1Q8NB12 490 aa11.23□□□□□ -0.61
SKA1-203ENST00000417656 NAXEQ8NCW5 288 aa11.23□□□□□ -0.61
SKA1-203ENST00000417656 ATP6V1C2Q8NEY4 427 aa11.23□□□□□ -0.61
SKA1-203ENST00000417656 OR2T12Q8NG77 320 aa11.23□□□□□ -0.61
SKA1-203ENST00000417656 RND1Q92730 232 aa11.23□□□□□ -0.61
SKA1-203ENST00000417656 TAMM41Q96BW9 452 aa11.23□□□□□ -0.61
SKA1-203ENST00000417656 SDCCAG3Q96C92 435 aa11.23□□□□□ -0.61
SKA1-203ENST00000417656 ZNF845Q96IR2 970 aaPredicted RBP11.23□□□□□ -0.61
SKA1-203ENST00000417656 KLHL15Q96M94 604 aa11.23□□□□□ -0.61
SKA1-203ENST00000417656 PINK1Q9BXM7 581 aa11.23□□□□□ -0.61
SKA1-203ENST00000417656 ARMC7Q9H6L4 198 aa11.23□□□□□ -0.61
SKA1-203ENST00000417656 ACER3Q9NUN7 267 aa11.23□□□□□ -0.61
SKA1-203ENST00000417656 Q9UFV3 132 aa11.23□□□□□ -0.61
SKA1-203ENST00000417656 TAGLN3Q9UI15 199 aa11.23□□□□□ -0.61
SKA1-203ENST00000417656 RNF6Q9Y252 685 aa11.23□□□□□ -0.61
SKA1-203ENST00000417656 DOPEY2Q9Y3R5 2298 aa11.23□□□□□ -0.61
SKA1-203ENST00000417656 A0A0J9YW62 118 aa11.22□□□□□ -0.61
SKA1-203ENST00000417656 MBD3L4A6NDZ8 208 aaPredicted RBP11.22□□□□□ -0.61
SKA1-203ENST00000417656 MBD3L3A6NE82 208 aaPredicted RBP11.22□□□□□ -0.61
SKA1-203ENST00000417656 PRORSD1PA6NEY8 169 aa11.22□□□□□ -0.61
SKA1-203ENST00000417656 MBD3L5A6NJ08 208 aaPredicted RBP11.22□□□□□ -0.61
SKA1-203ENST00000417656 CD8B2A6NJW9 211 aa11.22□□□□□ -0.61
SKA1-203ENST00000417656 FAAHO00519 579 aa11.22□□□□□ -0.61
SKA1-203ENST00000417656 TNFSF11O14788 317 aa11.22□□□□□ -0.61
SKA1-203ENST00000417656 SERPINB7O75635 380 aa11.22□□□□□ -0.61
SKA1-203ENST00000417656 TOXO94900 526 aa11.22□□□□□ -0.61
SKA1-203ENST00000417656 MFN2O95140 757 aa11.22□□□□□ -0.61
SKA1-203ENST00000417656 ACAA2P42765 397 aaKnown RBP11.22□□□□□ -0.61
SKA1-203ENST00000417656 EIF1AXP47813 144 aaKnown RBP11.22□□□□□ -0.61
SKA1-203ENST00000417656 CRYBA2P53672 197 aa11.22□□□□□ -0.61
SKA1-203ENST00000417656 DLX5P56178 289 aa11.22□□□□□ -0.61
SKA1-203ENST00000417656 PSME3P61289 254 aa11.22□□□□□ -0.61
SKA1-203ENST00000417656 LIPEQ05469 1076 aa11.22□□□□□ -0.61
SKA1-203ENST00000417656 SF3B4Q15427 424 aaKnown RBP eCLIP11.22□□□□□ -0.611e-6■■■□□ 16.5
SKA1-203ENST00000417656 ZSWIM7Q19AV6 140 aa11.22□□□□□ -0.61
SKA1-203ENST00000417656 INTS11Q5TA45 600 aaKnown RBP11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms