RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 PTCHD1Q96NR3 888 aa9.11□□□□□ -0.95
SS18-203ENST00000415083 ZNF426Q9BUY5 554 aa9.11□□□□□ -0.95
SS18-203ENST00000415083 NLGN3Q9NZ94 848 aa9.11□□□□□ -0.95
SS18-203ENST00000415083 DAPP1Q9UN19 280 aa9.11□□□□□ -0.95
SS18-203ENST00000415083 DMDP11532 3685 aa9.11□□□□□ -0.95
SS18-203ENST00000415083 IDSB3KWA1 339 aa9.11□□□□□ -0.95
SS18-203ENST00000415083 LRRN3E7EW58 273 aa9.11□□□□□ -0.95
SS18-203ENST00000415083 K7EQS6 105 aa9.11□□□□□ -0.95
SS18-203ENST00000415083 PIN1P1O15428 100 aa9.11□□□□□ -0.95
SS18-203ENST00000415083 FZD7O75084 574 aa9.11□□□□□ -0.95
SS18-203ENST00000415083 MPC2O95563 127 aa9.11□□□□□ -0.95
SS18-203ENST00000415083 ACAA2P42765 397 aaKnown RBP9.11□□□□□ -0.95
SS18-203ENST00000415083 TSFMP43897 325 aaKnown RBP9.11□□□□□ -0.95
SS18-203ENST00000415083 OR3A3P47888 321 aa9.11□□□□□ -0.95
SS18-203ENST00000415083 RPS15P62841 145 aaKnown RBP9.11□□□□□ -0.95
SS18-203ENST00000415083 ST3GAL2Q16842 350 aa9.11□□□□□ -0.95
SS18-203ENST00000415083 DCST2Q5T1A1 773 aa9.11□□□□□ -0.95
SS18-203ENST00000415083 FAM109BQ6ICB4 259 aaPredicted RBP9.11□□□□□ -0.95
SS18-203ENST00000415083 SDE2Q6IQ49 451 aa9.11□□□□□ -0.95
SS18-203ENST00000415083 AMIGO1Q86WK6 493 aa9.11□□□□□ -0.95
SS18-203ENST00000415083 SIAH3Q8IW03 269 aa9.11□□□□□ -0.95
SS18-203ENST00000415083 ZNF655Q8N720 491 aaPredicted RBP9.11□□□□□ -0.95
SS18-203ENST00000415083 OR4N2Q8NGD1 307 aa9.11□□□□□ -0.95
SS18-203ENST00000415083 CNOT9Q92600 299 aaKnown RBP9.11□□□□□ -0.95
SS18-203ENST00000415083 MAP6Q96JE9 813 aa9.11□□□□□ -0.95
SS18-203ENST00000415083 TNFRSF13CQ96RJ3 184 aa9.11□□□□□ -0.95
SS18-203ENST00000415083 DDOQ99489 341 aa9.11□□□□□ -0.95
SS18-203ENST00000415083 ABCG5Q9H222 651 aa9.11□□□□□ -0.95
SS18-203ENST00000415083 LRRN3Q9H3W5 708 aa9.11□□□□□ -0.95
SS18-203ENST00000415083 FN3KQ9H479 309 aa9.11□□□□□ -0.95
SS18-203ENST00000415083 KIR3DX1Q9H7L2 352 aa9.11□□□□□ -0.95
SS18-203ENST00000415083 AUNIPQ9H7T9 357 aa9.11□□□□□ -0.95
SS18-203ENST00000415083 FKRPQ9H9S5 495 aa9.11□□□□□ -0.95
SS18-203ENST00000415083 ELF5Q9UKW6 265 aaPredicted RBP9.11□□□□□ -0.95
SS18-203ENST00000415083 ZNF346Q9UL40 294 aaKnown RBP9.11□□□□□ -0.95
SS18-203ENST00000415083 CLEC4AQ9UMR7 237 aa9.11□□□□□ -0.95
SS18-203ENST00000415083 CACNG2Q9Y698 323 aa9.11□□□□□ -0.95
SS18-203ENST00000415083 ZNF780BQ9Y6R6 833 aa9.11□□□□□ -0.95
SS18-203ENST00000415083 A0A1W2PQU0 124 aa9.1□□□□□ -0.95
SS18-203ENST00000415083 TRAPPC13A5PLN9 417 aa9.1□□□□□ -0.95
SS18-203ENST00000415083 A6NCN8 305 aa9.1□□□□□ -0.95
SS18-203ENST00000415083 SNTNA6NMZ2 147 aa9.1□□□□□ -0.95
SS18-203ENST00000415083 TGFBR3LH3BV60 316 aa9.1□□□□□ -0.95
SS18-203ENST00000415083 HRKO00198 91 aa9.1□□□□□ -0.95
SS18-203ENST00000415083 PPP1R3DO95685 299 aa9.1□□□□□ -0.95
SS18-203ENST00000415083 HPXP02790 462 aa9.1□□□□□ -0.95
SS18-203ENST00000415083 NID1P14543 1247 aa9.1□□□□□ -0.95
SS18-203ENST00000415083 IFNA8P32881 189 aa9.1□□□□□ -0.95
SS18-203ENST00000415083 PITPNBP48739 271 aa9.1□□□□□ -0.95
SS18-203ENST00000415083 BTG1P62324 171 aa9.1□□□□□ -0.95
SS18-203ENST00000415083 PRICKLE4Q2TBC4 344 aa9.1□□□□□ -0.95
SS18-203ENST00000415083 KLHL12Q53G59 568 aa9.1□□□□□ -0.95
SS18-203ENST00000415083 MZT2BQ6NZ67 158 aa9.1□□□□□ -0.95
SS18-203ENST00000415083 PSRC1Q6PGN9 363 aaPredicted RBP9.1□□□□□ -0.95
SS18-203ENST00000415083 USP53Q70EK8 1073 aa9.1□□□□□ -0.95
SS18-203ENST00000415083 OR51A7Q8NH64 312 aa9.1□□□□□ -0.95
SS18-203ENST00000415083 OR1E3Q8WZA6 343 aa9.1□□□□□ -0.95
SS18-203ENST00000415083 NR4A3Q92570 626 aa9.1□□□□□ -0.95
SS18-203ENST00000415083 GHSRQ92847 366 aa9.1□□□□□ -0.95
SS18-203ENST00000415083 GAL3ST3Q96A11 431 aa9.1□□□□□ -0.95
SS18-203ENST00000415083 RFT1Q96AA3 541 aa9.1□□□□□ -0.95
SS18-203ENST00000415083 BPIFA2Q96DR5 249 aa9.1□□□□□ -0.95
SS18-203ENST00000415083 APOOQ9BUR5 198 aa9.1□□□□□ -0.95
SS18-203ENST00000415083 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP9.1□□□□□ -0.95
SS18-203ENST00000415083 OR51V1Q9H2C8 321 aa9.1□□□□□ -0.95
SS18-203ENST00000415083 NUDT15Q9NV35 164 aa9.1□□□□□ -0.95
SS18-203ENST00000415083 COPS3Q9UNS2 423 aa9.1□□□□□ -0.95
SS18-203ENST00000415083 C19orf53Q9UNZ5 99 aaPredicted RBP9.1□□□□□ -0.95
SS18-203ENST00000415083 AUP1Q9Y679 476 aa9.1□□□□□ -0.95
SS18-203ENST00000415083 SLC22A7Q9Y694 548 aa9.1□□□□□ -0.95
SS18-203ENST00000415083 J3QLW9 94 aa9.1□□□□□ -0.95
SS18-203ENST00000415083 CYR61O00622 381 aa9.1□□□□□ -0.95
SS18-203ENST00000415083 THBS1P07996 1170 aa9.1□□□□□ -0.95
SS18-203ENST00000415083 CPMP14384 443 aa9.1□□□□□ -0.95
SS18-203ENST00000415083 ZNF19P17023 458 aa9.1□□□□□ -0.95
SS18-203ENST00000415083 COL9A1P20849 921 aa9.1□□□□□ -0.95
SS18-203ENST00000415083 CFL1P23528 166 aaKnown RBP9.1□□□□□ -0.95
SS18-203ENST00000415083 RBMS1P29558 406 aaKnown RBP9.1□□□□□ -0.95
SS18-203ENST00000415083 SIGIRRQ6IA17 410 aa9.1□□□□□ -0.95
SS18-203ENST00000415083 IZUMO1Q8IYV9 350 aa9.1□□□□□ -0.95
SS18-203ENST00000415083 PIAS4Q8N2W9 510 aaPredicted RBP9.1□□□□□ -0.95
SS18-203ENST00000415083 LRRC17Q8N6Y2 441 aa9.1□□□□□ -0.95
SS18-203ENST00000415083 SMPDL3BQ92485 455 aa9.1□□□□□ -0.95
SS18-203ENST00000415083 PELI1Q96FA3 418 aa9.1□□□□□ -0.95
SS18-203ENST00000415083 PIGUQ9H490 435 aa9.1□□□□□ -0.95
SS18-203ENST00000415083 C2orf42Q9NWW7 574 aa9.1□□□□□ -0.95
SS18-203ENST00000415083 DTX4Q9Y2E6 619 aa9.1□□□□□ -0.95
SS18-203ENST00000415083 TBC1D3KA0A087X1G2 549 aa9.09□□□□□ -0.95
SS18-203ENST00000415083 A0A1W2PRG6 482 aa9.09□□□□□ -0.95
SS18-203ENST00000415083 DAPL1A0PJW8 107 aa9.09□□□□□ -0.95
SS18-203ENST00000415083 TBC1D3FA6NER0 549 aaPredicted RBP9.09□□□□□ -0.95
SS18-203ENST00000415083 GRXCR1A8MXD5 290 aa9.09□□□□□ -0.95
SS18-203ENST00000415083 GPR89AB7ZAQ6 455 aa9.09□□□□□ -0.95
SS18-203ENST00000415083 C5orf67F2Z3F1 127 aa9.09□□□□□ -0.95
SS18-203ENST00000415083 GPR89BP0CG08 455 aa9.09□□□□□ -0.95
SS18-203ENST00000415083 PEPDP12955 493 aa9.09□□□□□ -0.95
SS18-203ENST00000415083 KIR2DL1P43626 348 aaPredicted RBP9.09□□□□□ -0.95
SS18-203ENST00000415083 PPP1CAP62136 330 aa9.09□□□□□ -0.95
SS18-203ENST00000415083 TP53I3Q53FA7 332 aa9.09□□□□□ -0.95
SS18-203ENST00000415083 ACSM3Q53FZ2 586 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms