RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 GABARAPL2P60520 117 aa12.84□□□□□ -0.35
GPNMB-203ENST00000409458 GABREP78334 506 aa12.84□□□□□ -0.35
GPNMB-203ENST00000409458 TOP3AQ13472 1001 aaPredicted RBP12.84□□□□□ -0.35
GPNMB-203ENST00000409458 BICRALQ6AI39 1079 aa12.84□□□□□ -0.35
GPNMB-203ENST00000409458 ZNF620Q6ZNG0 422 aa12.84□□□□□ -0.35
GPNMB-203ENST00000409458 TMPRSS12Q86WS5 348 aa12.84□□□□□ -0.35
GPNMB-203ENST00000409458 CACTIN-AS1Q8N1I8 211 aa12.84□□□□□ -0.35
GPNMB-203ENST00000409458 OR10G3Q8NGC4 313 aa12.84□□□□□ -0.35
GPNMB-203ENST00000409458 RHOXF1Q8NHV9 184 aa12.84□□□□□ -0.35
GPNMB-203ENST00000409458 TEX47Q8TBZ9 253 aa12.84□□□□□ -0.35
GPNMB-203ENST00000409458 DNAJA4Q8WW22 397 aaPredicted RBP12.84□□□□□ -0.35
GPNMB-203ENST00000409458 TMCO6Q96DC7 493 aa12.84□□□□□ -0.35
GPNMB-203ENST00000409458 FBXL4Q9UKA2 621 aa12.84□□□□□ -0.35
GPNMB-203ENST00000409458 MRPS18BQ9Y676 258 aaKnown RBP12.84□□□□□ -0.35
GPNMB-203ENST00000409458 DMXL1Q9Y485 3027 aa12.84□□□□□ -0.35
GPNMB-203ENST00000409458 A0A087WUJ7 227 aa12.83□□□□□ -0.35
GPNMB-203ENST00000409458 UNC119BA6NIH7 251 aa12.83□□□□□ -0.35
GPNMB-203ENST00000409458 STMND1H3BQB6 276 aa12.83□□□□□ -0.35
GPNMB-203ENST00000409458 ITGA10O75578 1167 aa12.83□□□□□ -0.35
GPNMB-203ENST00000409458 HPP00738 406 aa12.83□□□□□ -0.35
GPNMB-203ENST00000409458 CCDC159P0C7I6 412 aa12.83□□□□□ -0.35
GPNMB-203ENST00000409458 ENDOUP21128 410 aaKnown RBP12.83□□□□□ -0.35
GPNMB-203ENST00000409458 SOX3P41225 446 aa12.83□□□□□ -0.35
GPNMB-203ENST00000409458 TUBA4AP68366 448 aa12.83□□□□□ -0.35
GPNMB-203ENST00000409458 CDK5Q00535 292 aa12.83□□□□□ -0.35
GPNMB-203ENST00000409458 GINS1Q14691 196 aa12.83□□□□□ -0.35
GPNMB-203ENST00000409458 TOMM34Q15785 309 aaPredicted RBP12.83□□□□□ -0.35
GPNMB-203ENST00000409458 BROXQ5VW32 411 aa12.83□□□□□ -0.35
GPNMB-203ENST00000409458 FCRLBQ6BAA4 426 aa12.83□□□□□ -0.35
GPNMB-203ENST00000409458 ZNF773Q6PK81 442 aa12.83□□□□□ -0.35
GPNMB-203ENST00000409458 NUP54Q7Z3B4 507 aa12.83□□□□□ -0.35
GPNMB-203ENST00000409458 ATG4DQ86TL0 474 aaPredicted RBP12.83□□□□□ -0.35
GPNMB-203ENST00000409458 ZNF563Q8TA94 476 aa12.83□□□□□ -0.35
GPNMB-203ENST00000409458 FANK1Q8TC84 345 aa12.83□□□□□ -0.35
GPNMB-203ENST00000409458 BPIFA2Q96DR5 249 aa12.83□□□□□ -0.35
GPNMB-203ENST00000409458 SPACA9Q96E40 222 aaPredicted RBP12.83□□□□□ -0.35
GPNMB-203ENST00000409458 RHNO1Q9BSD3 238 aa12.83□□□□□ -0.35
GPNMB-203ENST00000409458 B3GNT4Q9C0J1 378 aa12.83□□□□□ -0.35
GPNMB-203ENST00000409458 SLC25A19Q9HC21 320 aa12.83□□□□□ -0.35
GPNMB-203ENST00000409458 GALNT9Q9HCQ5 603 aa12.83□□□□□ -0.35
GPNMB-203ENST00000409458 TBC1D23Q9NUY8 699 aa12.83□□□□□ -0.35
GPNMB-203ENST00000409458 TUBA8Q9NY65 449 aaPredicted RBP12.83□□□□□ -0.35
GPNMB-203ENST00000409458 BLOC1S6Q9UL45 172 aa12.83□□□□□ -0.35
GPNMB-203ENST00000409458 TMEM5Q9Y2B1 443 aa12.83□□□□□ -0.35
GPNMB-203ENST00000409458 CDH10Q9Y6N8 788 aa12.83□□□□□ -0.35
GPNMB-203ENST00000409458 PTPRBP23467 1997 aa12.83□□□□□ -0.36
GPNMB-203ENST00000409458 IGKV1D-42A0A075B6H8 117 aa12.83□□□□□ -0.36
GPNMB-203ENST00000409458 C2orf72A6NCS6 295 aa12.83□□□□□ -0.36
GPNMB-203ENST00000409458 ENO4A6NNW6 628 aa12.83□□□□□ -0.36
GPNMB-203ENST00000409458 B4DXG7 233 aa12.83□□□□□ -0.36
GPNMB-203ENST00000409458 FAM20BO75063 409 aa12.83□□□□□ -0.36
GPNMB-203ENST00000409458 HTR1AP08908 422 aa12.83□□□□□ -0.36
GPNMB-203ENST00000409458 EEF1B2P24534 225 aaKnown RBP12.83□□□□□ -0.36
GPNMB-203ENST00000409458 ITPKBP27987 946 aa12.83□□□□□ -0.36
GPNMB-203ENST00000409458 PTGDSP41222 190 aa12.83□□□□□ -0.36
GPNMB-203ENST00000409458 P2RX1P51575 399 aa12.83□□□□□ -0.36
GPNMB-203ENST00000409458 GAS1P54826 345 aa12.83□□□□□ -0.36
GPNMB-203ENST00000409458 FXYD6P3P58550 94 aa12.83□□□□□ -0.36
GPNMB-203ENST00000409458 CXCR4P61073 352 aa12.83□□□□□ -0.36
GPNMB-203ENST00000409458 PIGFQ07326 219 aa12.83□□□□□ -0.36
GPNMB-203ENST00000409458 CRYZQ08257 329 aaKnown RBP12.83□□□□□ -0.36
GPNMB-203ENST00000409458 Q0VFX4 171 aa12.83□□□□□ -0.36
GPNMB-203ENST00000409458 NTRK2Q16620 822 aa12.83□□□□□ -0.36
GPNMB-203ENST00000409458 CLEC12AQ5QGZ9 265 aa12.83□□□□□ -0.36
GPNMB-203ENST00000409458 ACSM5Q6NUN0 579 aa12.83□□□□□ -0.36
GPNMB-203ENST00000409458 TMPRSS11FQ6ZWK6 438 aa12.83□□□□□ -0.36
GPNMB-203ENST00000409458 MRGPREQ86SM8 312 aa12.83□□□□□ -0.36
GPNMB-203ENST00000409458 SATL1Q86VE3 508 aa12.83□□□□□ -0.36
GPNMB-203ENST00000409458 SLC15A4Q8N697 577 aa12.83□□□□□ -0.36
GPNMB-203ENST00000409458 OR13C2Q8NGS9 318 aa12.83□□□□□ -0.36
GPNMB-203ENST00000409458 OR5W2Q8NH69 310 aa12.83□□□□□ -0.36
GPNMB-203ENST00000409458 B4GALNT2Q8NHY0 566 aa12.83□□□□□ -0.36
GPNMB-203ENST00000409458 TTC9Q92623 222 aa12.83□□□□□ -0.36
GPNMB-203ENST00000409458 GPR87Q9BY21 358 aa12.83□□□□□ -0.36
GPNMB-203ENST00000409458 HRH3Q9Y5N1 445 aa12.83□□□□□ -0.36
GPNMB-203ENST00000409458 TM4SF5O14894 197 aa12.82□□□□□ -0.36
GPNMB-203ENST00000409458 SLC1A3P43003 542 aa12.82□□□□□ -0.36
GPNMB-203ENST00000409458 RPL5P46777 297 aaKnown RBP12.82□□□□□ -0.36
GPNMB-203ENST00000409458 GIPRP48546 466 aa12.82□□□□□ -0.36
GPNMB-203ENST00000409458 NOVA1P51513 510 aaKnown RBP12.82□□□□□ -0.36
GPNMB-203ENST00000409458 GTF2A1P52655 376 aaPredicted RBP12.82□□□□□ -0.36
GPNMB-203ENST00000409458 SMSP52788 366 aa12.82□□□□□ -0.36
GPNMB-203ENST00000409458 TEKQ02763 1124 aa12.82□□□□□ -0.36
GPNMB-203ENST00000409458 CBFBQ13951 182 aa12.82□□□□□ -0.36
GPNMB-203ENST00000409458 COL28A1Q2UY09 1125 aa12.82□□□□□ -0.36
GPNMB-203ENST00000409458 ZNF791Q3KP31 576 aaPredicted RBP12.82□□□□□ -0.36
GPNMB-203ENST00000409458 CASP12Q6UXS9 341 aa12.82□□□□□ -0.36
GPNMB-203ENST00000409458 PTCHD4Q6ZW05 846 aa12.82□□□□□ -0.36
GPNMB-203ENST00000409458 MISPQ8IVT2 679 aa12.82□□□□□ -0.36
GPNMB-203ENST00000409458 CLDN22Q8N7P3 220 aa12.82□□□□□ -0.36
GPNMB-203ENST00000409458 OR4Q3Q8NH05 313 aa12.82□□□□□ -0.36
GPNMB-203ENST00000409458 DUSP19Q8WTR2 217 aa12.82□□□□□ -0.36
GPNMB-203ENST00000409458 IL4I1Q96RQ9 567 aa12.82□□□□□ -0.36
GPNMB-203ENST00000409458 P4HTMQ9NXG6 502 aa12.82□□□□□ -0.36
GPNMB-203ENST00000409458 IL20Q9NYY1 176 aa12.82□□□□□ -0.36
GPNMB-203ENST00000409458 TVP23BQ9NYZ1 205 aa12.82□□□□□ -0.36
GPNMB-203ENST00000409458 KLRF1Q9NZS2 232 aa12.82□□□□□ -0.36
GPNMB-203ENST00000409458 IL20RAQ9UHF4 553 aa12.82□□□□□ -0.36
GPNMB-203ENST00000409458 CPAMD8Q8IZJ3 1885 aa12.82□□□□□ -0.36
GPNMB-203ENST00000409458 ELOA3DA6NLF2 546 aaPredicted RBP12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms