RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 SOSTQ9BQB4 213 aa20.1■□□□□ 0.81
SHMT1-202ENST00000352886 DTX4Q9Y2E6 619 aa20.1■□□□□ 0.81
SHMT1-202ENST00000352886 SLC2A2P11168 524 aaPredicted RBP20.1■□□□□ 0.81
SHMT1-202ENST00000352886 EVX1P49640 407 aa20.1■□□□□ 0.81
SHMT1-202ENST00000352886 IL18Q14116 193 aa20.1■□□□□ 0.81
SHMT1-202ENST00000352886 ZNF800Q2TB10 664 aaPredicted RBP eCLIP20.1■□□□□ 0.81
SHMT1-202ENST00000352886 MZT2AQ6P582 158 aa20.1■□□□□ 0.81
SHMT1-202ENST00000352886 GRAMD2AQ8IUY3 354 aa20.1■□□□□ 0.81
SHMT1-202ENST00000352886 OR5W2Q8NH69 310 aa20.1■□□□□ 0.81
SHMT1-202ENST00000352886 TNFRSF13CQ96RJ3 184 aa20.1■□□□□ 0.81
SHMT1-202ENST00000352886 CTRCQ99895 268 aa20.1■□□□□ 0.81
SHMT1-202ENST00000352886 AGRPO00253 132 aa20.09■□□□□ 0.81
SHMT1-202ENST00000352886 CSF2P04141 144 aa20.09■□□□□ 0.81
SHMT1-202ENST00000352886 ZNF3P17036 446 aa20.09■□□□□ 0.81
SHMT1-202ENST00000352886 CFL1P23528 166 aaKnown RBP20.09■□□□□ 0.81
SHMT1-202ENST00000352886 STX4Q12846 297 aa20.09■□□□□ 0.81
SHMT1-202ENST00000352886 ATAD3CQ5T2N8 411 aa20.09■□□□□ 0.81
SHMT1-202ENST00000352886 MCATQ8IVS2 390 aaKnown RBP20.09■□□□□ 0.81
SHMT1-202ENST00000352886 SMAP2Q8WU79 429 aaPredicted RBP20.09■□□□□ 0.81
SHMT1-202ENST00000352886 RBM18Q96H35 190 aaKnown RBP20.09■□□□□ 0.81
SHMT1-202ENST00000352886 PEX11GQ96HA9 241 aa20.09■□□□□ 0.81
SHMT1-202ENST00000352886 DEPDC7Q96QD5 511 aa20.09■□□□□ 0.81
SHMT1-202ENST00000352886 ZNF426Q9BUY5 554 aa20.09■□□□□ 0.81
SHMT1-202ENST00000352886 INPP5EQ9NRR6 644 aa20.09■□□□□ 0.81
SHMT1-202ENST00000352886 SLCO1B1Q9Y6L6 691 aa20.09■□□□□ 0.81
SHMT1-202ENST00000352886 SLC9B1P1A6NJY1 282 aa20.08■□□□□ 0.81
SHMT1-202ENST00000352886 HRO43593 1189 aa20.08■□□□□ 0.81
SHMT1-202ENST00000352886 GYPBP06028 91 aa20.08■□□□□ 0.81
SHMT1-202ENST00000352886 SBK2P0C263 348 aa20.08■□□□□ 0.81
SHMT1-202ENST00000352886 FAM53BQ14153 422 aa20.08■□□□□ 0.81
SHMT1-202ENST00000352886 LCN1P1Q5VSP4 162 aa20.08■□□□□ 0.81
SHMT1-202ENST00000352886 ARL9Q6T311 187 aa20.08■□□□□ 0.81
SHMT1-202ENST00000352886 UTS2BQ765I0 119 aa20.08■□□□□ 0.81
SHMT1-202ENST00000352886 NR2C2APQ86WQ0 139 aa20.08■□□□□ 0.81
SHMT1-202ENST00000352886 SLC44A3Q8N4M1 653 aa20.08■□□□□ 0.81
SHMT1-202ENST00000352886 NDC1Q9BTX1 674 aa20.08■□□□□ 0.81
SHMT1-202ENST00000352886 GPR174Q9BXC1 333 aa20.08■□□□□ 0.81
SHMT1-202ENST00000352886 TRIM2Q9C040 744 aa20.08■□□□□ 0.81
SHMT1-202ENST00000352886 ADGRL4Q9HBW9 690 aa20.08■□□□□ 0.81
SHMT1-202ENST00000352886 MOV10Q9HCE1 1003 aaKnown RBP20.08■□□□□ 0.81
SHMT1-202ENST00000352886 E9PI62 339 aa20.08■□□□□ 0.8
SHMT1-202ENST00000352886 SOX30O94993 753 aa20.08■□□□□ 0.8
SHMT1-202ENST00000352886 MT-ND5P03915 603 aa20.08■□□□□ 0.8
SHMT1-202ENST00000352886 SLC2A5P22732 501 aa20.08■□□□□ 0.8
SHMT1-202ENST00000352886 CCR5P51681 352 aa20.08■□□□□ 0.8
SHMT1-202ENST00000352886 CRYZQ08257 329 aaKnown RBP20.08■□□□□ 0.8
SHMT1-202ENST00000352886 TRIQKQ629K1 86 aa20.08■□□□□ 0.8
SHMT1-202ENST00000352886 METAP1DQ6UB28 335 aaPredicted RBP20.08■□□□□ 0.8
SHMT1-202ENST00000352886 RTL4Q6ZR62 310 aa20.08■□□□□ 0.8
SHMT1-202ENST00000352886 CADM2Q8N3J6 435 aa20.08■□□□□ 0.8
SHMT1-202ENST00000352886 Q8N9G6 341 aaPredicted RBP20.08■□□□□ 0.8
SHMT1-202ENST00000352886 ZNF486Q96H40 463 aaPredicted RBP20.08■□□□□ 0.8
SHMT1-202ENST00000352886 VSTM2LQ96N03 204 aa20.08■□□□□ 0.8
SHMT1-202ENST00000352886 EVA1AQ9H8M9 152 aa20.08■□□□□ 0.8
SHMT1-202ENST00000352886 MCCC2Q9HCC0 563 aa20.08■□□□□ 0.8
SHMT1-202ENST00000352886 B4DXG7 233 aa20.07■□□□□ 0.8
SHMT1-202ENST00000352886 HK1P19367 917 aa20.07■□□□□ 0.8
SHMT1-202ENST00000352886 RPS5P46782 204 aaKnown RBP20.07■□□□□ 0.8
SHMT1-202ENST00000352886 MTNR1BP49286 362 aa20.07■□□□□ 0.8
SHMT1-202ENST00000352886 MAT1AQ00266 395 aaKnown RBP20.07■□□□□ 0.8
SHMT1-202ENST00000352886 ERV3-1Q14264 604 aa20.07■□□□□ 0.8
SHMT1-202ENST00000352886 NNATQ16517 81 aa20.07■□□□□ 0.8
SHMT1-202ENST00000352886 Q6ZS52 159 aa20.07■□□□□ 0.8
SHMT1-202ENST00000352886 RDH10Q8IZV5 341 aa20.07■□□□□ 0.8
SHMT1-202ENST00000352886 SMRP1Q8NCR6 262 aa20.07■□□□□ 0.8
SHMT1-202ENST00000352886 C19orf18Q8NEA5 215 aa20.07■□□□□ 0.8
SHMT1-202ENST00000352886 B3GAT2Q9NPZ5 323 aa20.07■□□□□ 0.8
SHMT1-202ENST00000352886 SHISA7A6NL88 538 aa20.07■□□□□ 0.8
SHMT1-202ENST00000352886 CHRNB1P11230 501 aa20.07■□□□□ 0.8
SHMT1-202ENST00000352886 PEPDP12955 493 aa20.07■□□□□ 0.8
SHMT1-202ENST00000352886 RNH1P13489 461 aaKnown RBP20.07■□□□□ 0.8
SHMT1-202ENST00000352886 RBM34P42696 430 aaKnown RBP20.07■□□□□ 0.8
SHMT1-202ENST00000352886 KIR2DL3P43628 341 aa20.07■□□□□ 0.8
SHMT1-202ENST00000352886 FHL1Q13642 323 aa20.07■□□□□ 0.8
SHMT1-202ENST00000352886 LSMEM1Q8N8F7 131 aa20.07■□□□□ 0.8
SHMT1-202ENST00000352886 ENKURQ8TC29 256 aa20.07■□□□□ 0.8
SHMT1-202ENST00000352886 SPACA7Q96KW9 195 aa20.07■□□□□ 0.8
SHMT1-202ENST00000352886 C4orf36Q96KX1 117 aa20.07■□□□□ 0.8
SHMT1-202ENST00000352886 NECTIN4Q96NY8 510 aa20.07■□□□□ 0.8
SHMT1-202ENST00000352886 PPIL3Q9H2H8 161 aaKnown RBP20.07■□□□□ 0.8
SHMT1-202ENST00000352886 ZMIZ1Q9ULJ6 1067 aa20.07■□□□□ 0.8
SHMT1-202ENST00000352886 BAIAP2Q9UQB8 552 aa20.07■□□□□ 0.8
SHMT1-202ENST00000352886 TMEM131Q92545 1883 aa20.07■□□□□ 0.8
SHMT1-202ENST00000352886 OR2W5A6NFC9 320 aa20.06■□□□□ 0.8
SHMT1-202ENST00000352886 A8MV72 311 aaPredicted RBP20.06■□□□□ 0.8
SHMT1-202ENST00000352886 GNB5O14775 395 aa20.06■□□□□ 0.8
SHMT1-202ENST00000352886 SLC6A6P31641 620 aa20.06■□□□□ 0.8
SHMT1-202ENST00000352886 MAZP56270 477 aaKnown RBP20.06■□□□□ 0.8
SHMT1-202ENST00000352886 ZNF267Q14586 743 aaPredicted RBP20.06■□□□□ 0.8
SHMT1-202ENST00000352886 PRTGQ2VWP7 1150 aa20.06■□□□□ 0.8
SHMT1-202ENST00000352886 IDNKQ5T6J7 187 aa20.06■□□□□ 0.8
SHMT1-202ENST00000352886 NPSR1Q6W5P4 371 aa20.06■□□□□ 0.8
SHMT1-202ENST00000352886 RCBTB1Q8NDN9 531 aa20.06■□□□□ 0.8
SHMT1-202ENST00000352886 CAPSLQ8WWF8 208 aa20.06■□□□□ 0.8
SHMT1-202ENST00000352886 SMPDL3BQ92485 455 aa20.06■□□□□ 0.8
SHMT1-202ENST00000352886 AHCYL2Q96HN2 611 aaKnown RBP20.06■□□□□ 0.8
SHMT1-202ENST00000352886 LRRC61Q9BV99 259 aa20.06■□□□□ 0.8
SHMT1-202ENST00000352886 GPR27Q9NS67 375 aa20.06■□□□□ 0.8
SHMT1-202ENST00000352886 ST6GALNAC1Q9NSC7 600 aaPredicted RBP20.06■□□□□ 0.8
SHMT1-202ENST00000352886 TRIOO75962 3097 aa20.06■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms