RNA–Protein interactions for RNA: ENST00000343575.10

CXCL12-201, Transcript of C-X-C motif chemokine ligand 12, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CXCL12, Length 1,857 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12-201ENST00000343575 SHQ1Q6PI26 577 aaKnown RBP13.48□□□□□ -0.25
CXCL12-201ENST00000343575 LYPD8Q6UX82 237 aa13.48□□□□□ -0.25
CXCL12-201ENST00000343575 LSRQ86X29 649 aaPredicted RBP13.48□□□□□ -0.25
CXCL12-201ENST00000343575 SLC34A3Q8N130 599 aa13.48□□□□□ -0.25
CXCL12-201ENST00000343575 NDNFQ8TB73 568 aa13.48□□□□□ -0.25
CXCL12-201ENST00000343575 OMA1Q96E52 524 aa13.48□□□□□ -0.25
CXCL12-201ENST00000343575 ARSGQ96EG1 525 aa13.48□□□□□ -0.25
CXCL12-201ENST00000343575 SLIRPQ9GZT3 109 aaKnown RBP13.48□□□□□ -0.25
CXCL12-201ENST00000343575 HOXD1Q9GZZ0 328 aa13.48□□□□□ -0.25
CXCL12-201ENST00000343575 ZNF160Q9HCG1 818 aa13.48□□□□□ -0.25
CXCL12-201ENST00000343575 MMP25Q9NPA2 562 aa13.48□□□□□ -0.25
CXCL12-201ENST00000343575 SACM1LQ9NTJ5 587 aa13.48□□□□□ -0.25
CXCL12-201ENST00000343575 RHCGQ9UBD6 479 aa13.48□□□□□ -0.25
CXCL12-201ENST00000343575 MYOTQ9UBF9 498 aa13.48□□□□□ -0.25
CXCL12-201ENST00000343575 LYVE1Q9Y5Y7 322 aa13.48□□□□□ -0.25
CXCL12-201ENST00000343575 ADAM10O14672 748 aa13.48□□□□□ -0.25
CXCL12-201ENST00000343575 MAN1A2O60476 641 aa13.48□□□□□ -0.25
CXCL12-201ENST00000343575 REM1O75628 298 aa13.48□□□□□ -0.25
CXCL12-201ENST00000343575 ZFAND5O76080 213 aa13.48□□□□□ -0.25
CXCL12-201ENST00000343575 CYP4B1P13584 511 aa13.48□□□□□ -0.25
CXCL12-201ENST00000343575 RHCEP18577 417 aa13.48□□□□□ -0.25
CXCL12-201ENST00000343575 PRKACGP22612 351 aa13.48□□□□□ -0.25
CXCL12-201ENST00000343575 CD82P27701 267 aa13.48□□□□□ -0.25
CXCL12-201ENST00000343575 RRM2P31350 389 aa13.48□□□□□ -0.25
CXCL12-201ENST00000343575 LIMS1P48059 325 aa13.48□□□□□ -0.25
CXCL12-201ENST00000343575 PIN1Q13526 163 aaPredicted RBP13.48□□□□□ -0.25
CXCL12-201ENST00000343575 FGFBP1Q14512 234 aa13.48□□□□□ -0.25
CXCL12-201ENST00000343575 GANABQ14697 944 aaKnown RBP13.48□□□□□ -0.25
CXCL12-201ENST00000343575 RTP5Q14D33 572 aa13.48□□□□□ -0.25
CXCL12-201ENST00000343575 FNDC7Q5VTL7 733 aa13.48□□□□□ -0.25
CXCL12-201ENST00000343575 DEF8Q6ZN54 512 aa13.48□□□□□ -0.25
CXCL12-201ENST00000343575 LYSMD2Q8IV50 215 aa13.48□□□□□ -0.25
CXCL12-201ENST00000343575 OR4C15Q8NGM1 316 aa13.48□□□□□ -0.25
CXCL12-201ENST00000343575 MCFD2Q8NI22 146 aa13.48□□□□□ -0.25
CXCL12-201ENST00000343575 M1APQ8TC57 530 aa13.48□□□□□ -0.25
CXCL12-201ENST00000343575 CNOT9Q92600 299 aaKnown RBP13.48□□□□□ -0.25
CXCL12-201ENST00000343575 SGCDQ92629 289 aa13.48□□□□□ -0.25
CXCL12-201ENST00000343575 NACC2Q96BF6 587 aa13.48□□□□□ -0.25
CXCL12-201ENST00000343575 LGALS12Q96DT0 336 aa13.48□□□□□ -0.25
CXCL12-201ENST00000343575 ZHX1-C8orf76Q96EF9 292 aa13.48□□□□□ -0.25
CXCL12-201ENST00000343575 PIP5K1AQ99755 562 aa13.48□□□□□ -0.25
CXCL12-201ENST00000343575 FAM117AQ9C073 453 aa13.48□□□□□ -0.25
CXCL12-201ENST00000343575 P4HTMQ9NXG6 502 aa13.48□□□□□ -0.25
CXCL12-201ENST00000343575 NTNG1Q9Y2I2 539 aa13.48□□□□□ -0.25
CXCL12-201ENST00000343575 EXPH5Q8NEV8 1989 aa13.48□□□□□ -0.25
CXCL12-201ENST00000343575 NSG1A0A0A6YYJ2 146 aa13.47□□□□□ -0.25
CXCL12-201ENST00000343575 FAM172BPA6NC97 362 aa13.47□□□□□ -0.25
CXCL12-201ENST00000343575 ICOSLGO75144 302 aa13.47□□□□□ -0.25
CXCL12-201ENST00000343575 SNX4O95219 450 aa13.47□□□□□ -0.25
CXCL12-201ENST00000343575 UTS2O95399 124 aa13.47□□□□□ -0.25
CXCL12-201ENST00000343575 GKN3PP0CG01 181 aa13.47□□□□□ -0.25
CXCL12-201ENST00000343575 HMGA2P52926 109 aa13.47□□□□□ -0.25
CXCL12-201ENST00000343575 DEFA1P59665 94 aa13.47□□□□□ -0.25
CXCL12-201ENST00000343575 DEFA3P59666 94 aa13.47□□□□□ -0.25
CXCL12-201ENST00000343575 PLCXD2Q0VAA5 305 aa13.47□□□□□ -0.25
CXCL12-201ENST00000343575 CD226Q15762 336 aa13.47□□□□□ -0.25
CXCL12-201ENST00000343575 EXT1Q16394 746 aa13.47□□□□□ -0.25
CXCL12-201ENST00000343575 MRGPREQ86SM8 312 aa13.47□□□□□ -0.25
CXCL12-201ENST00000343575 ZNF486Q96H40 463 aaPredicted RBP13.47□□□□□ -0.25
CXCL12-201ENST00000343575 DHRS1Q96LJ7 313 aa13.47□□□□□ -0.25
CXCL12-201ENST00000343575 OR2B2Q9GZK3 357 aa13.47□□□□□ -0.25
CXCL12-201ENST00000343575 UBQLN4Q9NRR5 601 aa13.47□□□□□ -0.25
CXCL12-201ENST00000343575 FBXL4Q9UKA2 621 aa13.47□□□□□ -0.25
CXCL12-201ENST00000343575 SLC9A8Q9Y2E8 581 aa13.47□□□□□ -0.25
CXCL12-201ENST00000343575 NPFFR2Q9Y5X5 522 aa13.47□□□□□ -0.25
CXCL12-201ENST00000343575 PMF1-BGLAPU3KQ54 211 aa13.47□□□□□ -0.25
CXCL12-201ENST00000343575 HEATR5AQ86XA9 2040 aa13.47□□□□□ -0.25
CXCL12-201ENST00000343575 THY1P04216 161 aa13.46□□□□□ -0.25
CXCL12-201ENST00000343575 ITGA2P17301 1181 aa13.46□□□□□ -0.25
CXCL12-201ENST00000343575 TBXA2RP21731 343 aa13.46□□□□□ -0.25
CXCL12-201ENST00000343575 IGFBP5P24593 272 aa13.46□□□□□ -0.25
CXCL12-201ENST00000343575 PNLIPRP2P54317 469 aa13.46□□□□□ -0.25
CXCL12-201ENST00000343575 PRKCDQ05655 676 aa13.46□□□□□ -0.25
CXCL12-201ENST00000343575 ZNF404Q494X3 552 aa13.46□□□□□ -0.25
CXCL12-201ENST00000343575 NANOGNBQ7Z5D8 188 aa13.46□□□□□ -0.25
CXCL12-201ENST00000343575 IL22RA1Q8N6P7 574 aa13.46□□□□□ -0.25
CXCL12-201ENST00000343575 ZNF614Q8N883 585 aa13.46□□□□□ -0.25
CXCL12-201ENST00000343575 OR5L2Q8NGL0 311 aa13.46□□□□□ -0.25
CXCL12-201ENST00000343575 SLC38A4Q969I6 547 aa13.46□□□□□ -0.25
CXCL12-201ENST00000343575 FUZQ9BT04 418 aa13.46□□□□□ -0.25
CXCL12-201ENST00000343575 NMNAT1Q9HAN9 279 aaPredicted RBP13.46□□□□□ -0.25
CXCL12-201ENST00000343575 MAN2C1Q9NTJ4 1040 aa13.46□□□□□ -0.25
CXCL12-201ENST00000343575 DNAJB12Q9NXW2 375 aaKnown RBP13.46□□□□□ -0.25
CXCL12-201ENST00000343575 TMEFF2Q9UIK5 374 aaPredicted RBP13.46□□□□□ -0.25
CXCL12-201ENST00000343575 SAMHD1Q9Y3Z3 626 aaKnown RBP13.46□□□□□ -0.25
CXCL12-201ENST00000343575 DOCK10Q96BY6 2186 aa13.46□□□□□ -0.26
CXCL12-201ENST00000343575 PNMA8CA0A1B0GUJ8 204 aa13.46□□□□□ -0.26
CXCL12-201ENST00000343575 SERINC4A6NH21 518 aa13.46□□□□□ -0.26
CXCL12-201ENST00000343575 C17orf51A8MQB3 221 aa13.46□□□□□ -0.26
CXCL12-201ENST00000343575 OR2J2O76002 312 aa13.46□□□□□ -0.26
CXCL12-201ENST00000343575 NR4A1P22736 598 aa13.46□□□□□ -0.26
CXCL12-201ENST00000343575 PSMB9P28065 219 aa13.46□□□□□ -0.26
CXCL12-201ENST00000343575 HTR2AP28223 471 aa13.46□□□□□ -0.26
CXCL12-201ENST00000343575 DNAJA1P31689 397 aaKnown RBP13.46□□□□□ -0.26
CXCL12-201ENST00000343575 ACAA2P42765 397 aaKnown RBP13.46□□□□□ -0.26
CXCL12-201ENST00000343575 VBP1P61758 197 aa13.46□□□□□ -0.26
CXCL12-201ENST00000343575 SRSF6Q13247 344 aaKnown RBP13.46□□□□□ -0.26
CXCL12-201ENST00000343575 NDUFAF6Q330K2 333 aa13.46□□□□□ -0.26
CXCL12-201ENST00000343575 UBE2UQ5VVX9 321 aa13.46□□□□□ -0.26
CXCL12-201ENST00000343575 USP43Q70EL4 1123 aa13.46□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms