RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 SIX3O95343 332 aaPredicted RBP7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 SOX3P41225 446 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 ADPRHP54922 357 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 GRM7Q14831 915 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 PAFAH1B3Q15102 231 aaKnown RBP7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 ELOBQ15370 118 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 PRAMEF8Q5VWM4 474 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 PRAMEF7Q5VXH5 474 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 UQCC3Q6UW78 93 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 LCN15Q6UWW0 184 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 SLC16A13Q7RTY0 426 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 BEND7Q8N7W2 519 aaPredicted RBP7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 RHOXF1Q8NHV9 184 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 ARNTL2Q8WYA1 636 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 RBPMSQ93062 196 aaKnown RBP7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 SLC35G5Q96KT7 338 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 PKP2Q99959 881 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 PCBD2Q9H0N5 130 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 TMEM38AQ9H6F2 299 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 ZNF552Q9H707 407 aaPredicted RBP7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 AGPAT4Q9NRZ5 378 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 FAM212BQ9NTI7 297 aaPredicted RBP7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 C1orf123Q9NWV4 160 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 RASL12Q9NYN1 266 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 C19orf25Q9UFG5 118 aaPredicted RBP7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 PCDHGC5Q9Y5F6 944 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 TRAPPC8Q9Y2L5 1435 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 KIAA0556O60303 1618 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 A0A1W2PPQ1 181 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 TNFSF11O14788 317 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 OR7C2O60412 319 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 DLX3O60479 287 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 EPOP01588 193 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 ANXA4P09525 319 aaPredicted RBP7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 ADRB3P13945 408 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 EEFSECP57772 596 aaKnown RBP7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 TNFRSF17Q02223 184 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 CLN3Q13286 438 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 TEAD2Q15562 447 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 TWIST1Q15672 202 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 KYAT1Q16773 422 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 KYAT3Q6YP21 454 aaKnown RBP7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 HTR3DQ70Z44 454 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 SLC51AQ86UW1 340 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 TGIF2LXQ8IUE1 241 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 NLGN4XQ8N0W4 816 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 PGBD5Q8N414 524 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 TSSK2Q96PF2 358 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 ZNF317Q96PQ6 595 aaPredicted RBP7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 C17orf75Q9HAS0 396 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 DMRT3Q9NQL9 472 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 PIGVQ9NUD9 493 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 CNTNAP2Q9UHC6 1331 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 TRAV18A0A075B6X5 111 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 C5orf60A6NFR6 353 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 OR6C75A6NL08 312 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 UMAD1C9J7I0 102 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 CCSO14618 274 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 NME2P1O60361 137 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 GPR32O75388 356 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 PIAS2O75928 621 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 BBOX1O75936 387 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 F12P00748 615 aaPredicted RBP7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 COX6CP09669 75 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 OR4E1P0C645 316 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 SLC35G4P0C7Q5 338 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 PDGFRLQ15198 375 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 FAM110CQ1W6H9 321 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 ZNF385BQ569K4 471 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 DNLZQ5SXM8 178 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 ZNF648Q5T619 568 aaPredicted RBP7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 CPEB2Q7Z5Q1 589 aaKnown RBP7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 PIGWQ7Z7B1 504 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 OSTM1Q86WC4 334 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 GPR32P1Q8NGA4 272 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 SFT2D1Q8WV19 159 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 LENG9Q96B70 501 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 SENP5Q96HI0 755 aaPredicted RBP7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 MED30Q96HR3 178 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 FER1L6-AS2Q96M78 137 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 ZNF48Q96MX3 618 aaPredicted RBP7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 TXLNGYQ9BZA5 131 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 WDR55Q9H6Y2 383 aaPredicted RBP7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 RNF19AQ9NV58 838 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 ERVW-1Q9UQF0 538 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 LIPT1Q9Y234 373 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 TLL2Q9Y6L7 1015 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 PIRO00625 290 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 FAM189A1O60320 539 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 ADAMTS4O75173 837 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 ZNF43P17038 809 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 CNR1P21554 472 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 AKR1C3P42330 323 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 RARRES1P49788 294 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 PRSS8Q16651 343 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 OR4F15Q8NGB8 312 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 FBXO25Q8TCJ0 367 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 FAM216AQ8WUB2 273 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 TRUB1Q8WWH5 349 aaKnown RBP7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 NDFIP1Q9BT67 221 aa7.2□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 217.9 ms