RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 SSPNQ14714 243 aa12.67□□□□□ -0.38
LDLR-201ENST00000252444 PTPRRQ15256 657 aa12.67□□□□□ -0.38
LDLR-201ENST00000252444 PODNL1Q6PEZ8 512 aa12.67□□□□□ -0.38
LDLR-201ENST00000252444 PSMA8Q8TAA3 256 aa12.67□□□□□ -0.38
LDLR-201ENST00000252444 THAP3Q8WTV1 239 aaPredicted RBP12.67□□□□□ -0.38
LDLR-201ENST00000252444 SCARF2Q96GP6 870 aaPredicted RBP12.67□□□□□ -0.38
LDLR-201ENST00000252444 RPP25Q9BUL9 199 aaKnown RBP12.67□□□□□ -0.38
LDLR-201ENST00000252444 WDR54Q9H977 334 aa12.67□□□□□ -0.38
LDLR-201ENST00000252444 ACAD8Q9UKU7 415 aa12.67□□□□□ -0.38
LDLR-201ENST00000252444 TMED7Q9Y3B3 224 aa12.67□□□□□ -0.38
LDLR-201ENST00000252444 DISC1C4P0D8 188 aa12.66□□□□□ -0.38
LDLR-201ENST00000252444 GAPDHSO14556 408 aaPredicted RBP12.66□□□□□ -0.38
LDLR-201ENST00000252444 PLD2O14939 933 aa12.66□□□□□ -0.38
LDLR-201ENST00000252444 HCKP08631 526 aa12.66□□□□□ -0.38
LDLR-201ENST00000252444 TNFSF4P23510 183 aa12.66□□□□□ -0.38
LDLR-201ENST00000252444 GLP1RP43220 463 aa12.66□□□□□ -0.38
LDLR-201ENST00000252444 WNT4P56705 351 aa12.66□□□□□ -0.38
LDLR-201ENST00000252444 IDNKQ5T6J7 187 aa12.66□□□□□ -0.38
LDLR-201ENST00000252444 DLEU7Q6UYE1 221 aa12.66□□□□□ -0.38
LDLR-201ENST00000252444 NAXDQ8IW45 347 aa12.66□□□□□ -0.38
LDLR-201ENST00000252444 PPP1R35Q8TAP8 253 aa12.66□□□□□ -0.38
LDLR-201ENST00000252444 LRP3O75074 770 aa12.66□□□□□ -0.38
LDLR-201ENST00000252444 CRYABP02511 175 aaKnown RBP12.66□□□□□ -0.38
LDLR-201ENST00000252444 ACP2P11117 423 aa12.66□□□□□ -0.38
LDLR-201ENST00000252444 NNATQ16517 81 aa12.66□□□□□ -0.38
LDLR-201ENST00000252444 SYPL1Q16563 259 aa12.66□□□□□ -0.38
LDLR-201ENST00000252444 ZNF691Q5VV52 312 aa12.66□□□□□ -0.38
LDLR-201ENST00000252444 PLCZ1Q86YW0 608 aa12.66□□□□□ -0.38
LDLR-201ENST00000252444 PM20D2Q8IYS1 436 aa12.66□□□□□ -0.38
LDLR-201ENST00000252444 D2HGDHQ8N465 521 aa12.66□□□□□ -0.38
LDLR-201ENST00000252444 CHST4Q8NCG5 386 aa12.66□□□□□ -0.38
LDLR-201ENST00000252444 SLC41A2Q96JW4 573 aa12.66□□□□□ -0.38
LDLR-201ENST00000252444 C20orf27Q9GZN8 174 aa12.66□□□□□ -0.38
LDLR-201ENST00000252444 OR52D1Q9H346 318 aa12.66□□□□□ -0.38
LDLR-201ENST00000252444 RAD1O60671 282 aa12.66□□□□□ -0.38
LDLR-201ENST00000252444 HOXB9P17482 250 aaPredicted RBP12.66□□□□□ -0.38
LDLR-201ENST00000252444 EIF5AP63241 154 aaKnown RBP12.66□□□□□ -0.38
LDLR-201ENST00000252444 CHRNEQ04844 493 aa12.66□□□□□ -0.38
LDLR-201ENST00000252444 FBXO42Q6P3S6 717 aa12.66□□□□□ -0.38
LDLR-201ENST00000252444 POGLUT1Q8NBL1 392 aa12.66□□□□□ -0.38
LDLR-201ENST00000252444 M1APQ8TC57 530 aa12.66□□□□□ -0.38
LDLR-201ENST00000252444 EGLN2Q96KS0 407 aa12.66□□□□□ -0.38
LDLR-201ENST00000252444 SAMD8Q96LT4 415 aa12.66□□□□□ -0.38
LDLR-201ENST00000252444 SMAD5Q99717 465 aaKnown RBP12.66□□□□□ -0.38
LDLR-201ENST00000252444 SLC22A4Q9H015 551 aa12.66□□□□□ -0.38
LDLR-201ENST00000252444 TAS2R8Q9NYW2 309 aa12.66□□□□□ -0.38
LDLR-201ENST00000252444 SOCS2O14508 198 aa12.66□□□□□ -0.38
LDLR-201ENST00000252444 ZNF195O14628 629 aa12.66□□□□□ -0.38
LDLR-201ENST00000252444 ZGLP1P0C6A0 271 aa12.66□□□□□ -0.38
LDLR-201ENST00000252444 DPP4P27487 766 aa12.66□□□□□ -0.38
LDLR-201ENST00000252444 THBS2P35442 1172 aa12.66□□□□□ -0.38
LDLR-201ENST00000252444 SPRED3Q2MJR0 410 aa12.66□□□□□ -0.38
LDLR-201ENST00000252444 PLK5Q496M5 336 aa12.66□□□□□ -0.38
LDLR-201ENST00000252444 PLAG1Q6DJT9 500 aa12.66□□□□□ -0.38
LDLR-201ENST00000252444 SSX8Q7RTT4 187 aa12.66□□□□□ -0.38
LDLR-201ENST00000252444 OR6C70A6NIJ9 312 aa12.65□□□□□ -0.38
LDLR-201ENST00000252444 SBK3P0C264 359 aa12.65□□□□□ -0.38
LDLR-201ENST00000252444 IRF2P14316 349 aa12.65□□□□□ -0.38
LDLR-201ENST00000252444 OR12D2P58182 307 aa12.65□□□□□ -0.38
LDLR-201ENST00000252444 AIMP2Q13155 320 aaKnown RBP12.65□□□□□ -0.38
LDLR-201ENST00000252444 DNASE1L3Q13609 305 aa12.65□□□□□ -0.38
LDLR-201ENST00000252444 OR5J2Q8NH18 312 aa12.65□□□□□ -0.38
LDLR-201ENST00000252444 DNASE2BQ8WZ79 361 aa12.65□□□□□ -0.38
LDLR-201ENST00000252444 SARAFQ96BY9 339 aa12.65□□□□□ -0.38
LDLR-201ENST00000252444 FRMD6Q96NE9 622 aa12.65□□□□□ -0.38
LDLR-201ENST00000252444 COL4A6Q14031 1691 aa12.65□□□□□ -0.38
LDLR-201ENST00000252444 SFTPCP11686 197 aa12.65□□□□□ -0.38
LDLR-201ENST00000252444 PIGAP37287 484 aa12.65□□□□□ -0.38
LDLR-201ENST00000252444 MS4A2Q01362 244 aa12.65□□□□□ -0.38
LDLR-201ENST00000252444 ZNF404Q494X3 552 aa12.65□□□□□ -0.38
LDLR-201ENST00000252444 FAM69AQ5T7M9 428 aa12.65□□□□□ -0.38
LDLR-201ENST00000252444 ZNF836Q6ZNA1 936 aa12.65□□□□□ -0.38
LDLR-201ENST00000252444 RETREG3Q86VR2 466 aa12.65□□□□□ -0.38
LDLR-201ENST00000252444 FAM160A2Q8N612 972 aaPredicted RBP12.65□□□□□ -0.38
LDLR-201ENST00000252444 CLDN22Q8N7P3 220 aa12.65□□□□□ -0.38
LDLR-201ENST00000252444 ABCB9Q9NP78 766 aa12.65□□□□□ -0.38
LDLR-201ENST00000252444 MRPS7Q9Y2R9 242 aaKnown RBP12.65□□□□□ -0.38
LDLR-201ENST00000252444 FAM240BA0A1B0GVZ2 78 aa12.65□□□□□ -0.38
LDLR-201ENST00000252444 BMP4P12644 408 aa12.65□□□□□ -0.38
LDLR-201ENST00000252444 PRKACGP22612 351 aa12.65□□□□□ -0.38
LDLR-201ENST00000252444 LSM3P62310 102 aaKnown RBP12.65□□□□□ -0.38
LDLR-201ENST00000252444 ADAM8P78325 824 aa12.65□□□□□ -0.38
LDLR-201ENST00000252444 MAT1AQ00266 395 aaKnown RBP12.65□□□□□ -0.38
LDLR-201ENST00000252444 ECH1Q13011 328 aa12.65□□□□□ -0.38
LDLR-201ENST00000252444 MAD2L1BPQ15013 274 aaPredicted RBP12.65□□□□□ -0.38
LDLR-201ENST00000252444 TBCEQ15813 527 aaPredicted RBP12.65□□□□□ -0.38
LDLR-201ENST00000252444 C3orf38Q5JPI3 329 aa12.65□□□□□ -0.38
LDLR-201ENST00000252444 RHBDD2Q6NTF9 364 aa12.65□□□□□ -0.38
LDLR-201ENST00000252444 OR5T3Q8NGG3 340 aa12.65□□□□□ -0.38
LDLR-201ENST00000252444 SARGQ9BW04 601 aa12.65□□□□□ -0.38
LDLR-201ENST00000252444 FKRPQ9H9S5 495 aa12.65□□□□□ -0.38
LDLR-201ENST00000252444 SLC24A3Q9HC58 644 aa12.65□□□□□ -0.38
LDLR-201ENST00000252444 SLC16A6O15403 523 aa12.65□□□□□ -0.38
LDLR-201ENST00000252444 PPP1R3DO95685 299 aa12.65□□□□□ -0.38
LDLR-201ENST00000252444 SLC1A3P43003 542 aa12.65□□□□□ -0.38
LDLR-201ENST00000252444 OR3A3P47888 321 aa12.65□□□□□ -0.38
LDLR-201ENST00000252444 OR3A2P47893 321 aa12.65□□□□□ -0.38
LDLR-201ENST00000252444 SNRPGP62308 76 aaKnown RBP12.65□□□□□ -0.38
LDLR-201ENST00000252444 VRK2Q86Y07 508 aa12.65□□□□□ -0.38
LDLR-201ENST00000252444 FUNDC1Q8IVP5 155 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms