RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 DNAJA2O60884 412 aa18.67■□□□□ 0.58
CLN3-240ENST00000631023 NUDT7P0C024 238 aa18.67■□□□□ 0.58
CLN3-240ENST00000631023 NID1P14543 1247 aa18.67■□□□□ 0.58
CLN3-240ENST00000631023 PRKCAP17252 672 aa18.67■□□□□ 0.58
CLN3-240ENST00000631023 PSMA4P25789 261 aaKnown RBP18.67■□□□□ 0.58
CLN3-240ENST00000631023 ELK4P28324 431 aa18.67■□□□□ 0.58
CLN3-240ENST00000631023 SLC6A8P48029 635 aa18.67■□□□□ 0.58
CLN3-240ENST00000631023 SUCLG1P53597 346 aaKnown RBP18.67■□□□□ 0.58
CLN3-240ENST00000631023 CLDN20P56880 219 aa18.67■□□□□ 0.58
CLN3-240ENST00000631023 LARS2Q15031 903 aaKnown RBP18.67■□□□□ 0.58
CLN3-240ENST00000631023 QPRTQ15274 297 aa18.67■□□□□ 0.58
CLN3-240ENST00000631023 ZSWIM7Q19AV6 140 aa18.67■□□□□ 0.58
CLN3-240ENST00000631023 COQ5Q5HYK3 327 aa18.67■□□□□ 0.58
CLN3-240ENST00000631023 GRAMD2AQ8IUY3 354 aa18.67■□□□□ 0.58
CLN3-240ENST00000631023 TNIP2Q8NFZ5 429 aa18.67■□□□□ 0.58
CLN3-240ENST00000631023 FBXO27Q8NI29 283 aa18.67■□□□□ 0.58
CLN3-240ENST00000631023 POC1BQ8TC44 478 aa18.67■□□□□ 0.58
CLN3-240ENST00000631023 ST8SIA1Q92185 356 aa18.67■□□□□ 0.58
CLN3-240ENST00000631023 MAL2Q969L2 176 aa18.67■□□□□ 0.58
CLN3-240ENST00000631023 ARMC7Q9H6L4 198 aa18.67■□□□□ 0.58
CLN3-240ENST00000631023 BCL2L10Q9HD36 194 aa18.67■□□□□ 0.58
CLN3-240ENST00000631023 KCNJ16Q9NPI9 418 aa18.67■□□□□ 0.58
CLN3-240ENST00000631023 DSPPQ9NZW4 1301 aa18.66■□□□□ 0.58
CLN3-240ENST00000631023 TNFSF12-TNFSF13A0A0A6YY99 330 aa18.66■□□□□ 0.58
CLN3-240ENST00000631023 TOXO94900 526 aa18.66■□□□□ 0.58
CLN3-240ENST00000631023 NPPAP01160 153 aa18.66■□□□□ 0.58
CLN3-240ENST00000631023 FOXF1Q12946 379 aa18.66■□□□□ 0.58
CLN3-240ENST00000631023 CYLC2Q14093 348 aaPredicted RBP18.66■□□□□ 0.58
CLN3-240ENST00000631023 CDSNQ15517 529 aa18.66■□□□□ 0.58
CLN3-240ENST00000631023 TOMM34Q15785 309 aaPredicted RBP18.66■□□□□ 0.58
CLN3-240ENST00000631023 SGCBQ16585 318 aa18.66■□□□□ 0.58
CLN3-240ENST00000631023 SLC25A53Q5H9E4 307 aa18.66■□□□□ 0.58
CLN3-240ENST00000631023 PDSS1Q5T2R2 415 aa18.66■□□□□ 0.58
CLN3-240ENST00000631023 LILRA2Q8N149 483 aa18.66■□□□□ 0.58
CLN3-240ENST00000631023 BBS10Q8TAM1 723 aa18.66■□□□□ 0.58
CLN3-240ENST00000631023 ZFP3Q96NJ6 502 aa18.66■□□□□ 0.58
CLN3-240ENST00000631023 NPAS1Q99742 590 aa18.66■□□□□ 0.58
CLN3-240ENST00000631023 CPPED1Q9BRF8 314 aaPredicted RBP18.66■□□□□ 0.58
CLN3-240ENST00000631023 PAQR5Q9NXK6 330 aaPredicted RBP18.66■□□□□ 0.58
CLN3-240ENST00000631023 IFT52Q9Y366 437 aa18.66■□□□□ 0.58
CLN3-240ENST00000631023 CACNA1DQ01668 2161 aa18.65■□□□□ 0.58
CLN3-240ENST00000631023 MPDZO75970 2070 aa18.65■□□□□ 0.58
CLN3-240ENST00000631023 CLDN24A6NM45 220 aa18.65■□□□□ 0.58
CLN3-240ENST00000631023 GJE1A6NN92 205 aa18.65■□□□□ 0.58
CLN3-240ENST00000631023 KDM4EB2RXH2 506 aaPredicted RBP18.65■□□□□ 0.58
CLN3-240ENST00000631023 FBP2O00757 339 aa18.65■□□□□ 0.58
CLN3-240ENST00000631023 THBS1P07996 1170 aa18.65■□□□□ 0.58
CLN3-240ENST00000631023 ARAFP10398 606 aa18.65■□□□□ 0.58
CLN3-240ENST00000631023 GYS2P54840 703 aa18.65■□□□□ 0.58
CLN3-240ENST00000631023 CLDN15P56746 228 aa18.65■□□□□ 0.58
CLN3-240ENST00000631023 GNGT1P63211 74 aa18.65■□□□□ 0.58
CLN3-240ENST00000631023 LIN52Q52LA3 116 aa18.65■□□□□ 0.58
CLN3-240ENST00000631023 RPS26P11Q5JNZ5 115 aaPredicted RBP18.65■□□□□ 0.58
CLN3-240ENST00000631023 MRPL2Q5T653 305 aaKnown RBP18.65■□□□□ 0.58
CLN3-240ENST00000631023 REEP3Q6NUK4 255 aa18.65■□□□□ 0.58
CLN3-240ENST00000631023 ESPNLQ6ZVH7 1005 aa18.65■□□□□ 0.58
CLN3-240ENST00000631023 P4HA3Q7Z4N8 544 aa18.65■□□□□ 0.58
CLN3-240ENST00000631023 ZNF440Q8IYI8 595 aa18.65■□□□□ 0.58
CLN3-240ENST00000631023 PCYOX1LQ8NBM8 494 aa18.65■□□□□ 0.58
CLN3-240ENST00000631023 ZNF563Q8TA94 476 aa18.65■□□□□ 0.58
CLN3-240ENST00000631023 SH3GL1Q99961 368 aa18.65■□□□□ 0.58
CLN3-240ENST00000631023 PINK1Q9BXM7 581 aa18.65■□□□□ 0.58
CLN3-240ENST00000631023 FAM107BQ9H098 131 aa18.65■□□□□ 0.58
CLN3-240ENST00000631023 IKZF5Q9H5V7 419 aa18.65■□□□□ 0.58
CLN3-240ENST00000631023 TMEM38AQ9H6F2 299 aa18.65■□□□□ 0.58
CLN3-240ENST00000631023 CLCF1Q9UBD9 225 aa18.65■□□□□ 0.58
CLN3-240ENST00000631023 ZNF629Q9UEG4 869 aaPredicted RBP18.65■□□□□ 0.58
CLN3-240ENST00000631023 LOC100653049A0A140TA62 436 aa18.64■□□□□ 0.58
CLN3-240ENST00000631023 FAM90A27PA6NNH2 459 aa18.64■□□□□ 0.58
CLN3-240ENST00000631023 H0YC42 278 aa18.64■□□□□ 0.58
CLN3-240ENST00000631023 ETV2O00321 342 aaPredicted RBP18.64■□□□□ 0.58
CLN3-240ENST00000631023 EIF1AYO14602 144 aaKnown RBP18.64■□□□□ 0.58
CLN3-240ENST00000631023 DVL2O14641 736 aa18.64■□□□□ 0.58
CLN3-240ENST00000631023 KRT34O76011 436 aa18.64■□□□□ 0.58
CLN3-240ENST00000631023 PGM3O95394 542 aa18.64■□□□□ 0.58
CLN3-240ENST00000631023 UQCRBP14927 111 aa18.64■□□□□ 0.58
CLN3-240ENST00000631023 SLC6A2P23975 617 aa18.64■□□□□ 0.58
CLN3-240ENST00000631023 RYKP34925 604 aa18.64■□□□□ 0.58
CLN3-240ENST00000631023 TPD52P55327 224 aaPredicted RBP18.64■□□□□ 0.58
CLN3-240ENST00000631023 SESN3P58005 492 aa18.64■□□□□ 0.58
CLN3-240ENST00000631023 CDK6Q00534 326 aa18.64■□□□□ 0.58
CLN3-240ENST00000631023 TRMT5Q32P41 509 aaKnown RBP18.64■□□□□ 0.58
CLN3-240ENST00000631023 SLC25A35Q3KQZ1 300 aa18.64■□□□□ 0.58
CLN3-240ENST00000631023 SP5Q6BEB4 398 aaPredicted RBP18.64■□□□□ 0.58
CLN3-240ENST00000631023 GGNQ86UU5 652 aa18.64■□□□□ 0.58
CLN3-240ENST00000631023 SNX32Q86XE0 403 aa18.64■□□□□ 0.58
CLN3-240ENST00000631023 KRT73Q86Y46 540 aa18.64■□□□□ 0.58
CLN3-240ENST00000631023 C9orf106Q8NAJ2 232 aa18.64■□□□□ 0.58
CLN3-240ENST00000631023 CNOT9Q92600 299 aaKnown RBP18.64■□□□□ 0.58
CLN3-240ENST00000631023 CENPEQ02224 2701 aa18.64■□□□□ 0.57
CLN3-240ENST00000631023 SLC22A20A6NK97 555 aa18.64■□□□□ 0.57
CLN3-240ENST00000631023 RCBTB2O95199 551 aa18.64■□□□□ 0.57
CLN3-240ENST00000631023 NTN1O95631 604 aa18.64■□□□□ 0.57
CLN3-240ENST00000631023 ETS2P15036 469 aa18.64■□□□□ 0.57
CLN3-240ENST00000631023 CTSSP25774 331 aa18.64■□□□□ 0.57
CLN3-240ENST00000631023 VRK2Q86Y07 508 aa18.64■□□□□ 0.57
CLN3-240ENST00000631023 NFKBIDQ8NI38 313 aa18.64■□□□□ 0.57
CLN3-240ENST00000631023 TMEM185BQ9H7F4 350 aa18.64■□□□□ 0.57
CLN3-240ENST00000631023 SERINC1Q9NRX5 453 aa18.64■□□□□ 0.57
CLN3-240ENST00000631023 ACER3Q9NUN7 267 aa18.64■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms