RNA–Protein interactions for RNA: ENST00000595945.5

SHKBP1-211, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-211ENST00000595945 SDCCAG3Q96C92 435 aa13.45□□□□□ -0.26
SHKBP1-211ENST00000595945 CCNL2Q96S94 520 aaPredicted RBP13.45□□□□□ -0.26
SHKBP1-211ENST00000595945 RBM4BQ9BQ04 359 aaKnown RBP13.45□□□□□ -0.26
SHKBP1-211ENST00000595945 RBM4Q9BWF3 364 aaKnown RBP13.45□□□□□ -0.26
SHKBP1-211ENST00000595945 OSBPL11Q9BXB4 747 aa13.45□□□□□ -0.26
SHKBP1-211ENST00000595945 ANGPTL4Q9BY76 406 aa13.45□□□□□ -0.26
SHKBP1-211ENST00000595945 VCXQ9H320 206 aa13.45□□□□□ -0.26
SHKBP1-211ENST00000595945 METTL7AQ9H8H3 244 aa13.45□□□□□ -0.26
SHKBP1-211ENST00000595945 SMURF2Q9HAU4 748 aa13.45□□□□□ -0.26
SHKBP1-211ENST00000595945 HHATLQ9HCP6 504 aa13.45□□□□□ -0.26
SHKBP1-211ENST00000595945 GALNT9Q9HCQ5 603 aa13.45□□□□□ -0.26
SHKBP1-211ENST00000595945 KLRF1Q9NZS2 232 aa13.45□□□□□ -0.26
SHKBP1-211ENST00000595945 TMCC3Q9ULS5 477 aa13.45□□□□□ -0.26
SHKBP1-211ENST00000595945 LRRC42Q9Y546 428 aa13.45□□□□□ -0.26
SHKBP1-211ENST00000595945 WIF1Q9Y5W5 379 aa13.45□□□□□ -0.26
SHKBP1-211ENST00000595945 NCKAP5O14513 1909 aa13.45□□□□□ -0.26
SHKBP1-211ENST00000595945 TNRC6AQ8NDV7 1962 aaKnown RBP13.44□□□□□ -0.26
SHKBP1-211ENST00000595945 A0A087WUU8 490 aa13.44□□□□□ -0.26
SHKBP1-211ENST00000595945 KLK10O43240 276 aa13.44□□□□□ -0.26
SHKBP1-211ENST00000595945 HCRTR2O43614 444 aa13.44□□□□□ -0.26
SHKBP1-211ENST00000595945 LINGO3P0C6S8 592 aa13.44□□□□□ -0.26
SHKBP1-211ENST00000595945 CCL3P10147 92 aa13.44□□□□□ -0.26
SHKBP1-211ENST00000595945 CBLP22681 906 aa13.44□□□□□ -0.26
SHKBP1-211ENST00000595945 MST1P26927 711 aa13.44□□□□□ -0.26
SHKBP1-211ENST00000595945 RYKP34925 604 aa13.44□□□□□ -0.26
SHKBP1-211ENST00000595945 DAPP51397 102 aa13.44□□□□□ -0.26
SHKBP1-211ENST00000595945 DLX5P56178 289 aa13.44□□□□□ -0.26
SHKBP1-211ENST00000595945 FGD3Q5JSP0 725 aa13.44□□□□□ -0.26
SHKBP1-211ENST00000595945 SWT1Q5T5J6 900 aaKnown RBP13.44□□□□□ -0.26
SHKBP1-211ENST00000595945 ABHD17BQ5VST6 288 aa13.44□□□□□ -0.26
SHKBP1-211ENST00000595945 WBP2NLQ6ICG8 309 aa13.44□□□□□ -0.26
SHKBP1-211ENST00000595945 WDR88Q6ZMY6 472 aa13.44□□□□□ -0.26
SHKBP1-211ENST00000595945 APLFQ8IW19 511 aaPredicted RBP13.44□□□□□ -0.26
SHKBP1-211ENST00000595945 LINC00471Q8N535 108 aa13.44□□□□□ -0.26
SHKBP1-211ENST00000595945 B4GALNT2Q8NHY0 566 aa13.44□□□□□ -0.26
SHKBP1-211ENST00000595945 GPR119Q8TDV5 335 aa13.44□□□□□ -0.26
SHKBP1-211ENST00000595945 SLC38A4Q969I6 547 aa13.44□□□□□ -0.26
SHKBP1-211ENST00000595945 C3orf49Q96BT1 292 aa13.44□□□□□ -0.26
SHKBP1-211ENST00000595945 SH3YL1Q96HL8 342 aaPredicted RBP13.44□□□□□ -0.26
SHKBP1-211ENST00000595945 RDH12Q96NR8 316 aa13.44□□□□□ -0.26
SHKBP1-211ENST00000595945 ZNF184Q99676 751 aaPredicted RBP13.44□□□□□ -0.26
SHKBP1-211ENST00000595945 ZNF426Q9BUY5 554 aa13.44□□□□□ -0.26
SHKBP1-211ENST00000595945 SDHAF3Q9NRP4 125 aa13.44□□□□□ -0.26
SHKBP1-211ENST00000595945 WDR70Q9NW82 654 aa13.44□□□□□ -0.26
SHKBP1-211ENST00000595945 STMN3Q9NZ72 180 aa13.44□□□□□ -0.26
SHKBP1-211ENST00000595945 CNIH4Q9P003 139 aa13.44□□□□□ -0.26
SHKBP1-211ENST00000595945 TEKT2Q9UIF3 430 aa13.44□□□□□ -0.26
SHKBP1-211ENST00000595945 SLC7A7Q9UM01 511 aa13.44□□□□□ -0.26
SHKBP1-211ENST00000595945 MED12Q93074 2177 aa13.44□□□□□ -0.26
SHKBP1-211ENST00000595945 ANKUB1A6NFN9 424 aa13.43□□□□□ -0.26
SHKBP1-211ENST00000595945 ETV2O00321 342 aaPredicted RBP13.43□□□□□ -0.26
SHKBP1-211ENST00000595945 CHP2O43745 196 aa13.43□□□□□ -0.26
SHKBP1-211ENST00000595945 NTN1O95631 604 aa13.43□□□□□ -0.26
SHKBP1-211ENST00000595945 ADRB1P08588 477 aa13.43□□□□□ -0.26
SHKBP1-211ENST00000595945 ANXA8P13928 327 aa13.43□□□□□ -0.26
SHKBP1-211ENST00000595945 UQCRBP14927 111 aa13.43□□□□□ -0.26
SHKBP1-211ENST00000595945 PGCP20142 388 aa13.43□□□□□ -0.26
SHKBP1-211ENST00000595945 MSX1P28360 303 aa13.43□□□□□ -0.26
SHKBP1-211ENST00000595945 IDH2P48735 452 aaKnown RBP13.43□□□□□ -0.26
SHKBP1-211ENST00000595945 CYB561P49447 251 aa13.43□□□□□ -0.26
SHKBP1-211ENST00000595945 TUBA3CQ13748 450 aa13.43□□□□□ -0.26
SHKBP1-211ENST00000595945 COL28A1Q2UY09 1125 aa13.43□□□□□ -0.26
SHKBP1-211ENST00000595945 SLC22A10Q63ZE4 541 aa13.43□□□□□ -0.26
SHKBP1-211ENST00000595945 TUBA3EQ6PEY2 450 aa13.43□□□□□ -0.26
SHKBP1-211ENST00000595945 ULK3Q6PHR2 472 aa13.43□□□□□ -0.26
SHKBP1-211ENST00000595945 CYP4Z2PQ8N1L4 340 aa13.43□□□□□ -0.26
SHKBP1-211ENST00000595945 TMCO5AQ8N6Q1 288 aa13.43□□□□□ -0.26
SHKBP1-211ENST00000595945 FADS6Q8N9I5 356 aa13.43□□□□□ -0.26
SHKBP1-211ENST00000595945 OR9Q2Q8NGE9 314 aa13.43□□□□□ -0.26
SHKBP1-211ENST00000595945 MAGEE2Q8TD90 523 aaPredicted RBP13.43□□□□□ -0.26
SHKBP1-211ENST00000595945 DNAJA4Q8WW22 397 aaPredicted RBP13.43□□□□□ -0.26
SHKBP1-211ENST00000595945 ACOT11Q8WXI4 607 aaPredicted RBP13.43□□□□□ -0.26
SHKBP1-211ENST00000595945 DNAJC9Q8WXX5 260 aa13.43□□□□□ -0.26
SHKBP1-211ENST00000595945 MPP4Q96JB8 637 aa13.43□□□□□ -0.26
SHKBP1-211ENST00000595945 DGCR6LQ9BY27 220 aa13.43□□□□□ -0.26
SHKBP1-211ENST00000595945 ADAM19Q9H013 955 aa13.43□□□□□ -0.26
SHKBP1-211ENST00000595945 ING2Q9H160 280 aa13.43□□□□□ -0.26
SHKBP1-211ENST00000595945 C12orf10Q9HB07 376 aa13.43□□□□□ -0.26
SHKBP1-211ENST00000595945 C2orf72A6NCS6 295 aa13.42□□□□□ -0.26
SHKBP1-211ENST00000595945 CEACAM4O75871 244 aa13.42□□□□□ -0.26
SHKBP1-211ENST00000595945 CD96P40200 585 aa13.42□□□□□ -0.26
SHKBP1-211ENST00000595945 RBM34P42696 430 aaKnown RBP13.42□□□□□ -0.26
SHKBP1-211ENST00000595945 SLC1A3P43003 542 aa13.42□□□□□ -0.26
SHKBP1-211ENST00000595945 HSPA13P48723 471 aa13.42□□□□□ -0.26
SHKBP1-211ENST00000595945 CCR4P51679 360 aa13.42□□□□□ -0.26
SHKBP1-211ENST00000595945 COPZ1P61923 177 aa13.42□□□□□ -0.26
SHKBP1-211ENST00000595945 LSM11P83369 360 aaKnown RBP eCLIP13.42□□□□□ -0.26
SHKBP1-211ENST00000595945 CBFBQ13951 182 aa13.42□□□□□ -0.26
SHKBP1-211ENST00000595945 TOMM34Q15785 309 aaPredicted RBP13.42□□□□□ -0.26
SHKBP1-211ENST00000595945 NHSL2Q5HYW2 709 aa13.42□□□□□ -0.26
SHKBP1-211ENST00000595945 PGBD2Q6P3X8 592 aa13.42□□□□□ -0.26
SHKBP1-211ENST00000595945 ISLR2Q6UXK2 745 aa13.42□□□□□ -0.26
SHKBP1-211ENST00000595945 MDGA2Q7Z553 956 aa13.42□□□□□ -0.26
SHKBP1-211ENST00000595945 ATG4DQ86TL0 474 aaPredicted RBP13.42□□□□□ -0.26
SHKBP1-211ENST00000595945 CADM2Q8N3J6 435 aa13.42□□□□□ -0.26
SHKBP1-211ENST00000595945 WDSUB1Q8N9V3 476 aa13.42□□□□□ -0.26
SHKBP1-211ENST00000595945 OR2M3Q8NG83 312 aa13.42□□□□□ -0.26
SHKBP1-211ENST00000595945 OR4K5Q8NGD3 323 aa13.42□□□□□ -0.26
SHKBP1-211ENST00000595945 TMEM255BQ8WV15 326 aa13.42□□□□□ -0.26
SHKBP1-211ENST00000595945 GATA6Q92908 595 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms