RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 ADAM19Q9H013 955 aa13.94□□□□□ -0.18
SS18-215ENST00000580642 PTGES2Q9H7Z7 377 aa13.94□□□□□ -0.18
SS18-215ENST00000580642 MAN2C1Q9NTJ4 1040 aa13.94□□□□□ -0.18
SS18-215ENST00000580642 VNN3Q9NY84 501 aa13.94□□□□□ -0.18
SS18-215ENST00000580642 GPR83Q9NYM4 423 aa13.94□□□□□ -0.18
SS18-215ENST00000580642 PDP1Q9P0J1 537 aaPredicted RBP13.94□□□□□ -0.18
SS18-215ENST00000580642 PPP4R1LQ9P1A2 415 aa13.94□□□□□ -0.18
SS18-215ENST00000580642 LRFN1Q9P244 771 aa13.94□□□□□ -0.18
SS18-215ENST00000580642 MGAT4BQ9UQ53 548 aa13.94□□□□□ -0.18
SS18-215ENST00000580642 U3KQV3 271 aa13.94□□□□□ -0.18
SS18-215ENST00000580642 A0A1B0GWA3 101 aa13.93□□□□□ -0.18
SS18-215ENST00000580642 SCO2O43819 266 aa13.93□□□□□ -0.18
SS18-215ENST00000580642 ADAP00813 363 aa13.93□□□□□ -0.18
SS18-215ENST00000580642 CDH2P19022 906 aaPredicted RBP13.93□□□□□ -0.18
SS18-215ENST00000580642 FKBP2P26885 142 aaKnown RBP13.93□□□□□ -0.18
SS18-215ENST00000580642 CD96P40200 585 aa13.93□□□□□ -0.18
SS18-215ENST00000580642 RAD23AP54725 363 aa13.93□□□□□ -0.18
SS18-215ENST00000580642 OC90Q02509 493 aaPredicted RBP13.93□□□□□ -0.18
SS18-215ENST00000580642 COX10Q12887 443 aa13.93□□□□□ -0.18
SS18-215ENST00000580642 TUBA3CQ13748 450 aa13.93□□□□□ -0.18
SS18-215ENST00000580642 EXOC3L2Q2M3D2 409 aa13.93□□□□□ -0.18
SS18-215ENST00000580642 ALG10BQ5I7T1 473 aa13.93□□□□□ -0.18
SS18-215ENST00000580642 FGD3Q5JSP0 725 aa13.93□□□□□ -0.18
SS18-215ENST00000580642 ATP1A1-AS1Q5TC04 95 aa13.93□□□□□ -0.18
SS18-215ENST00000580642 ZNF770Q6IQ21 691 aaPredicted RBP13.93□□□□□ -0.18
SS18-215ENST00000580642 TUBA3EQ6PEY2 450 aa13.93□□□□□ -0.18
SS18-215ENST00000580642 CBLN3Q6UW01 205 aa13.93□□□□□ -0.18
SS18-215ENST00000580642 LINC00114Q6XXX2 140 aa13.93□□□□□ -0.18
SS18-215ENST00000580642 CCDC81Q6ZN84 652 aa13.93□□□□□ -0.18
SS18-215ENST00000580642 MBOAT2Q6ZWT7 520 aa13.93□□□□□ -0.18
SS18-215ENST00000580642 RRM2BQ7LG56 351 aa13.93□□□□□ -0.18
SS18-215ENST00000580642 PLCZ1Q86YW0 608 aa13.93□□□□□ -0.18
SS18-215ENST00000580642 TMCO5AQ8N6Q1 288 aa13.93□□□□□ -0.18
SS18-215ENST00000580642 GATSQ8NAP1 163 aa13.93□□□□□ -0.18
SS18-215ENST00000580642 OR10G2Q8NGC3 310 aa13.93□□□□□ -0.18
SS18-215ENST00000580642 GPR119Q8TDV5 335 aa13.93□□□□□ -0.18
SS18-215ENST00000580642 ZNF597Q96LX8 424 aa13.93□□□□□ -0.18
SS18-215ENST00000580642 ZNF184Q99676 751 aaPredicted RBP13.93□□□□□ -0.18
SS18-215ENST00000580642 DGCR6LQ9BY27 220 aa13.93□□□□□ -0.18
SS18-215ENST00000580642 RTN4RQ9BZR6 473 aa13.93□□□□□ -0.18
SS18-215ENST00000580642 ZNF556Q9HAH1 456 aa13.93□□□□□ -0.18
SS18-215ENST00000580642 WDR70Q9NW82 654 aa13.93□□□□□ -0.18
SS18-215ENST00000580642 ORC6Q9Y5N6 252 aa13.93□□□□□ -0.18
SS18-215ENST00000580642 KCNMB2Q9Y691 235 aa13.93□□□□□ -0.18
SS18-215ENST00000580642 A0A087WUJ7 227 aa13.92□□□□□ -0.18
SS18-215ENST00000580642 TRBV4-1A0A0J9YWV2 114 aa13.92□□□□□ -0.18
SS18-215ENST00000580642 C7orf72A4D263 438 aa13.92□□□□□ -0.18
SS18-215ENST00000580642 OR5H15A6NDH6 313 aa13.92□□□□□ -0.18
SS18-215ENST00000580642 FAM47E-STBD1D6RA91 191 aa13.92□□□□□ -0.18
SS18-215ENST00000580642 MASP2O00187 686 aa13.92□□□□□ -0.18
SS18-215ENST00000580642 SOCS2O14508 198 aa13.92□□□□□ -0.18
SS18-215ENST00000580642 EI24O14681 340 aa13.92□□□□□ -0.18
SS18-215ENST00000580642 SNPHO15079 494 aa13.92□□□□□ -0.18
SS18-215ENST00000580642 ADAM11O75078 769 aa13.92□□□□□ -0.18
SS18-215ENST00000580642 NEURL1O76050 574 aa13.92□□□□□ -0.18
SS18-215ENST00000580642 LYPD3O95274 346 aa13.92□□□□□ -0.18
SS18-215ENST00000580642 GP1BBP13224 206 aa13.92□□□□□ -0.18
SS18-215ENST00000580642 CNR1P21554 472 aa13.92□□□□□ -0.18
SS18-215ENST00000580642 ITPKBP27987 946 aa13.92□□□□□ -0.18
SS18-215ENST00000580642 ADH6P28332 368 aa13.92□□□□□ -0.18
SS18-215ENST00000580642 EIF1P41567 113 aaKnown RBP13.92□□□□□ -0.18
SS18-215ENST00000580642 IDH2P48735 452 aaKnown RBP13.92□□□□□ -0.18
SS18-215ENST00000580642 IST1P53990 364 aa13.92□□□□□ -0.18
SS18-215ENST00000580642 HOXC5Q00444 222 aa13.92□□□□□ -0.18
SS18-215ENST00000580642 SRSF6Q13247 344 aaKnown RBP13.92□□□□□ -0.18
SS18-215ENST00000580642 LRRC36Q1X8D7 754 aa13.92□□□□□ -0.18
SS18-215ENST00000580642 COL28A1Q2UY09 1125 aa13.92□□□□□ -0.18
SS18-215ENST00000580642 GLYR1Q49A26 553 aaPredicted RBP13.92□□□□□ -0.18
SS18-215ENST00000580642 SLC25A53Q5H9E4 307 aa13.92□□□□□ -0.18
SS18-215ENST00000580642 OTUD3Q5T2D3 398 aaPredicted RBP13.92□□□□□ -0.18
SS18-215ENST00000580642 KDM4DQ6B0I6 523 aa13.92□□□□□ -0.18
SS18-215ENST00000580642 PODNL1Q6PEZ8 512 aa13.92□□□□□ -0.18
SS18-215ENST00000580642 C5orf46Q6UWT4 87 aa13.92□□□□□ -0.18
SS18-215ENST00000580642 CD300LDQ6UXZ3 194 aa13.92□□□□□ -0.18
SS18-215ENST00000580642 LRRC69Q6ZNQ3 347 aa13.92□□□□□ -0.18
SS18-215ENST00000580642 GRINAQ7Z429 371 aa13.92□□□□□ -0.18
SS18-215ENST00000580642 TMEM179BQ7Z7N9 219 aa13.92□□□□□ -0.18
SS18-215ENST00000580642 TSPYL5Q86VY4 417 aaPredicted RBP13.92□□□□□ -0.18
SS18-215ENST00000580642 SPACA3Q8IXA5 215 aa13.92□□□□□ -0.18
SS18-215ENST00000580642 PARP8Q8N3A8 854 aa13.92□□□□□ -0.18
SS18-215ENST00000580642 PSD4Q8NDX1 1056 aa13.92□□□□□ -0.18
SS18-215ENST00000580642 OR52J3Q8NH60 311 aa13.92□□□□□ -0.18
SS18-215ENST00000580642 ZNF563Q8TA94 476 aa13.92□□□□□ -0.18
SS18-215ENST00000580642 TM9SF4Q92544 642 aa13.92□□□□□ -0.18
SS18-215ENST00000580642 SLC29A1Q99808 456 aa13.92□□□□□ -0.18
SS18-215ENST00000580642 PRSS27Q9BQR3 290 aa13.92□□□□□ -0.18
SS18-215ENST00000580642 TMEM43Q9BTV4 400 aa13.92□□□□□ -0.18
SS18-215ENST00000580642 ZNF552Q9H707 407 aaPredicted RBP13.92□□□□□ -0.18
SS18-215ENST00000580642 RHCGQ9UBD6 479 aa13.92□□□□□ -0.18
SS18-215ENST00000580642 SLC7A7Q9UM01 511 aa13.92□□□□□ -0.18
SS18-215ENST00000580642 TMEM5Q9Y2B1 443 aa13.92□□□□□ -0.18
SS18-215ENST00000580642 MRPS18CQ9Y3D5 142 aaKnown RBP13.92□□□□□ -0.18
SS18-215ENST00000580642 PCDHGB7Q9Y5F8 929 aa13.92□□□□□ -0.18
SS18-215ENST00000580642 PCDHGA9Q9Y5G4 932 aaKnown RBP13.92□□□□□ -0.18
SS18-215ENST00000580642 A0A087WUU8 490 aa13.91□□□□□ -0.18
SS18-215ENST00000580642 PDLIM1O00151 329 aa13.91□□□□□ -0.18
SS18-215ENST00000580642 OIP5O43482 229 aa13.91□□□□□ -0.18
SS18-215ENST00000580642 TRIM3O75382 744 aaPredicted RBP13.91□□□□□ -0.18
SS18-215ENST00000580642 CBR3O75828 277 aa13.91□□□□□ -0.18
SS18-215ENST00000580642 WDPCPO95876 746 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms