RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 SLC22A10Q63ZE4 541 aa22.88■■□□□ 1.25
SHMT1-207ENST00000580002 P3H2Q8IVL5 708 aa22.88■■□□□ 1.25
SHMT1-207ENST00000580002 WDSUB1Q8N9V3 476 aa22.88■■□□□ 1.25
SHMT1-207ENST00000580002 B4GALNT2Q8NHY0 566 aa22.88■■□□□ 1.25
SHMT1-207ENST00000580002 TMEM27Q9HBJ8 222 aa22.88■■□□□ 1.25
SHMT1-207ENST00000580002 WIF1Q9Y5W5 379 aa22.88■■□□□ 1.25
SHMT1-207ENST00000580002 KCNMB2Q9Y691 235 aa22.88■■□□□ 1.25
SHMT1-207ENST00000580002 A0A087WUU8 490 aa22.87■■□□□ 1.25
SHMT1-207ENST00000580002 A0A0B4J2E0 115 aa22.87■■□□□ 1.25
SHMT1-207ENST00000580002 A0A1B0GX12 115 aa22.87■■□□□ 1.25
SHMT1-207ENST00000580002 A0A1W2PRQ8 180 aa22.87■■□□□ 1.25
SHMT1-207ENST00000580002 TRAPPC13A5PLN9 417 aa22.87■■□□□ 1.25
SHMT1-207ENST00000580002 PEX1O43933 1283 aa22.87■■□□□ 1.25
SHMT1-207ENST00000580002 EIF4E2O60573 245 aaKnown RBP22.87■■□□□ 1.25
SHMT1-207ENST00000580002 FMO6PO60774 539 aa22.87■■□□□ 1.25
SHMT1-207ENST00000580002 CYB561P49447 251 aa22.87■■□□□ 1.25
SHMT1-207ENST00000580002 CLK3P49761 638 aaKnown RBP22.87■■□□□ 1.25
SHMT1-207ENST00000580002 DGCR6Q14129 220 aa22.87■■□□□ 1.25
SHMT1-207ENST00000580002 ZSWIM7Q19AV6 140 aa22.87■■□□□ 1.25
SHMT1-207ENST00000580002 CRTC2Q53ET0 693 aaPredicted RBP22.87■■□□□ 1.25
SHMT1-207ENST00000580002 SVOPLQ8N434 492 aa22.87■■□□□ 1.25
SHMT1-207ENST00000580002 GIPC3Q8TF64 312 aa22.87■■□□□ 1.25
SHMT1-207ENST00000580002 NTNG2Q96CW9 530 aa22.87■■□□□ 1.25
SHMT1-207ENST00000580002 DEPPQ9NTK1 212 aa22.87■■□□□ 1.25
SHMT1-207ENST00000580002 LRFN1Q9P244 771 aa22.87■■□□□ 1.25
SHMT1-207ENST00000580002 FBXL2Q9UKC9 423 aa22.87■■□□□ 1.25
SHMT1-207ENST00000580002 NEURL1O76050 574 aa22.86■■□□□ 1.25
SHMT1-207ENST00000580002 NUDT14O95848 222 aa22.86■■□□□ 1.25
SHMT1-207ENST00000580002 POU2F1P14859 743 aa22.86■■□□□ 1.25
SHMT1-207ENST00000580002 P2RX1P51575 399 aa22.86■■□□□ 1.25
SHMT1-207ENST00000580002 C17orf67Q0P5P2 114 aa22.86■■□□□ 1.25
SHMT1-207ENST00000580002 ST3GAL3Q11203 375 aa22.86■■□□□ 1.25
SHMT1-207ENST00000580002 DCST1Q5T197 706 aa22.86■■□□□ 1.25
SHMT1-207ENST00000580002 ARSKQ6UWY0 536 aa22.86■■□□□ 1.25
SHMT1-207ENST00000580002 RTL4Q6ZR62 310 aa22.86■■□□□ 1.25
SHMT1-207ENST00000580002 HIPK1Q86Z02 1210 aa22.86■■□□□ 1.25
SHMT1-207ENST00000580002 APLFQ8IW19 511 aaPredicted RBP22.86■■□□□ 1.25
SHMT1-207ENST00000580002 LSMEM1Q8N8F7 131 aa22.86■■□□□ 1.25
SHMT1-207ENST00000580002 OR10G2Q8NGC3 310 aa22.86■■□□□ 1.25
SHMT1-207ENST00000580002 OR5W2Q8NH69 310 aa22.86■■□□□ 1.25
SHMT1-207ENST00000580002 GPR119Q8TDV5 335 aa22.86■■□□□ 1.25
SHMT1-207ENST00000580002 SLC35B4Q969S0 331 aa22.86■■□□□ 1.25
SHMT1-207ENST00000580002 FEVQ99581 238 aa22.86■■□□□ 1.25
SHMT1-207ENST00000580002 OSBPL10Q9BXB5 764 aa22.86■■□□□ 1.25
SHMT1-207ENST00000580002 ANGPTL4Q9BY76 406 aa22.86■■□□□ 1.25
SHMT1-207ENST00000580002 TRIM2Q9C040 744 aa22.86■■□□□ 1.25
SHMT1-207ENST00000580002 DSN1Q9H410 356 aa22.86■■□□□ 1.25
SHMT1-207ENST00000580002 CPNE5Q9HCH3 593 aa22.86■■□□□ 1.25
SHMT1-207ENST00000580002 TEKT2Q9UIF3 430 aa22.86■■□□□ 1.25
SHMT1-207ENST00000580002 TMEFF2Q9UIK5 374 aaPredicted RBP22.86■■□□□ 1.25
SHMT1-207ENST00000580002 SH3PXD2BA1X283 911 aa22.86■■□□□ 1.25
SHMT1-207ENST00000580002 PIP5K1CO60331 668 aa22.86■■□□□ 1.25
SHMT1-207ENST00000580002 GASTP01350 101 aa22.86■■□□□ 1.25
SHMT1-207ENST00000580002 DNASE1L1P49184 302 aa22.86■■□□□ 1.25
SHMT1-207ENST00000580002 GPR85P60893 370 aa22.86■■□□□ 1.25
SHMT1-207ENST00000580002 FOXK1P85037 733 aa22.86■■□□□ 1.25
SHMT1-207ENST00000580002 PPP2R2BQ00005 443 aa22.86■■□□□ 1.25
SHMT1-207ENST00000580002 DAG1Q14118 895 aa22.86■■□□□ 1.25
SHMT1-207ENST00000580002 AGAP7PQ5VUJ5 663 aa22.86■■□□□ 1.25
SHMT1-207ENST00000580002 ZNF770Q6IQ21 691 aaPredicted RBP22.86■■□□□ 1.25
SHMT1-207ENST00000580002 ZNF440Q8IYI8 595 aa22.86■■□□□ 1.25
SHMT1-207ENST00000580002 RELTQ969Z4 430 aa22.86■■□□□ 1.25
SHMT1-207ENST00000580002 C3orf49Q96BT1 292 aa22.86■■□□□ 1.25
SHMT1-207ENST00000580002 AGAP4Q96P64 663 aa22.86■■□□□ 1.25
SHMT1-207ENST00000580002 NIPSNAP1Q9BPW8 284 aa22.86■■□□□ 1.25
SHMT1-207ENST00000580002 PPP4R1LQ9P1A2 415 aa22.86■■□□□ 1.25
SHMT1-207ENST00000580002 RAXQ9Y2V3 346 aa22.86■■□□□ 1.25
SHMT1-207ENST00000580002 SHISA8B8ZZ34 492 aa22.85■■□□□ 1.25
SHMT1-207ENST00000580002 CCNB2O95067 398 aa22.85■■□□□ 1.25
SHMT1-207ENST00000580002 ALPLP05186 524 aa22.85■■□□□ 1.25
SHMT1-207ENST00000580002 TCEA1P23193 301 aaKnown RBP22.85■■□□□ 1.25
SHMT1-207ENST00000580002 TRAM2Q15035 370 aa22.85■■□□□ 1.25
SHMT1-207ENST00000580002 ZIK1Q3SY52 487 aaPredicted RBP22.85■■□□□ 1.25
SHMT1-207ENST00000580002 PRICKLE2Q7Z3G6 844 aa22.85■■□□□ 1.25
SHMT1-207ENST00000580002 PSD4Q8NDX1 1056 aa22.85■■□□□ 1.25
SHMT1-207ENST00000580002 ZNF563Q8TA94 476 aa22.85■■□□□ 1.25
SHMT1-207ENST00000580002 SGCZQ96LD1 299 aa22.85■■□□□ 1.25
SHMT1-207ENST00000580002 GPA33Q99795 319 aa22.85■■□□□ 1.25
SHMT1-207ENST00000580002 CSAG2Q9Y5P2 127 aa22.85■■□□□ 1.25
SHMT1-207ENST00000580002 CACNA1AO00555 2505 aa22.85■■□□□ 1.25
SHMT1-207ENST00000580002 PINLYPA6NC86 204 aa22.84■■□□□ 1.25
SHMT1-207ENST00000580002 C1QTNF9BB2RNN3 333 aa22.84■■□□□ 1.25
SHMT1-207ENST00000580002 C1QTNF9P0C862 333 aa22.84■■□□□ 1.25
SHMT1-207ENST00000580002 ZNF613Q6PF04 617 aa22.84■■□□□ 1.25
SHMT1-207ENST00000580002 ISLR2Q6UXK2 745 aa22.84■■□□□ 1.25
SHMT1-207ENST00000580002 CCDC81Q6ZN84 652 aa22.84■■□□□ 1.25
SHMT1-207ENST00000580002 GALNT5Q7Z7M9 940 aa22.84■■□□□ 1.25
SHMT1-207ENST00000580002 CATSPER1Q8NEC5 780 aa22.84■■□□□ 1.25
SHMT1-207ENST00000580002 OR4K5Q8NGD3 323 aa22.84■■□□□ 1.25
SHMT1-207ENST00000580002 NRBF2Q96F24 287 aa22.84■■□□□ 1.25
SHMT1-207ENST00000580002 SECISBP2Q96T21 854 aaKnown RBP22.84■■□□□ 1.25
SHMT1-207ENST00000580002 UTP23Q9BRU9 249 aaKnown RBP22.84■■□□□ 1.25
SHMT1-207ENST00000580002 DKK4Q9UBT3 224 aa22.84■■□□□ 1.25
SHMT1-207ENST00000580002 CPAMD8Q8IZJ3 1885 aa22.84■■□□□ 1.25
SHMT1-207ENST00000580002 POLR2IP36954 125 aaKnown RBP22.84■■□□□ 1.25
SHMT1-207ENST00000580002 UGT2B15P54855 530 aa22.84■■□□□ 1.25
SHMT1-207ENST00000580002 QPRTQ15274 297 aa22.84■■□□□ 1.25
SHMT1-207ENST00000580002 OR1C1Q15619 314 aa22.84■■□□□ 1.25
SHMT1-207ENST00000580002 ALG10BQ5I7T1 473 aa22.84■■□□□ 1.25
SHMT1-207ENST00000580002 OR2M3Q8NG83 312 aa22.84■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms