RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 C9orf43Q8TAL5 461 aaPredicted RBP7.33□□□□□ -1.24
VPS39-213ENST00000570062 TEX47Q8TBZ9 253 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 TMEM234Q8WY98 164 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 FCGR1BQ92637 280 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 ATOH1Q92858 354 aaPredicted RBP7.33□□□□□ -1.24
VPS39-213ENST00000570062 TCEAL3Q969E4 200 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 DGCR14Q96DF8 476 aaKnown RBP7.33□□□□□ -1.24
VPS39-213ENST00000570062 GAL3ST4Q96RP7 486 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 MYCBPQ99417 103 aaPredicted RBP7.33□□□□□ -1.24
VPS39-213ENST00000570062 DEFB126Q9BYW3 111 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 TBL1XR1Q9BZK7 514 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 ZNF700Q9H0M5 742 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 QRSL1Q9H0R6 528 aaKnown RBP7.33□□□□□ -1.24
VPS39-213ENST00000570062 NXF5Q9H1B4 397 aaKnown RBP7.33□□□□□ -1.24
VPS39-213ENST00000570062 ADNPQ9H2P0 1102 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 SMOC1Q9H4F8 434 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 SOX17Q9H6I2 414 aaPredicted RBP7.33□□□□□ -1.24
VPS39-213ENST00000570062 RLIMQ9NVW2 624 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 DNAJB12Q9NXW2 375 aaKnown RBP7.33□□□□□ -1.24
VPS39-213ENST00000570062 CNOT2Q9NZN8 540 aaKnown RBP7.33□□□□□ -1.24
VPS39-213ENST00000570062 RHCGQ9UBD6 479 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 RALYQ9UKM9 306 aaKnown RBP7.33□□□□□ -1.24
VPS39-213ENST00000570062 PCDHGB1Q9Y5G3 927 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 NPFFR2Q9Y5X5 522 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 AK5Q9Y6K8 562 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 UNC79Q9P2D8 2635 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 PCDH15Q96QU1 1955 aa7.33□□□□□ -1.24
VPS39-213ENST00000570062 A0A0B4J2E0 115 aa7.32□□□□□ -1.24
VPS39-213ENST00000570062 A0A1B0GX12 115 aa7.32□□□□□ -1.24
VPS39-213ENST00000570062 EFCAB10A6NFE3 127 aa7.32□□□□□ -1.24
VPS39-213ENST00000570062 C4orf47A7E2U8 309 aa7.32□□□□□ -1.24
VPS39-213ENST00000570062 ZNF701M0R085 212 aaPredicted RBP7.32□□□□□ -1.24
VPS39-213ENST00000570062 HRKO00198 91 aa7.32□□□□□ -1.24
VPS39-213ENST00000570062 TP53I11O14683 189 aa7.32□□□□□ -1.24
VPS39-213ENST00000570062 NDUFB5O43674 189 aa7.32□□□□□ -1.24
VPS39-213ENST00000570062 HYAL3O43820 417 aaPredicted RBP7.32□□□□□ -1.24
VPS39-213ENST00000570062 HCN1O60741 890 aa7.32□□□□□ -1.24
VPS39-213ENST00000570062 SEMA7AO75326 666 aa7.32□□□□□ -1.24
VPS39-213ENST00000570062 CSO75390 466 aaKnown RBP7.32□□□□□ -1.24
VPS39-213ENST00000570062 SMNDC1O75940 238 aaKnown RBP eCLIP7.32□□□□□ -1.24
VPS39-213ENST00000570062 STK17BO94768 372 aa7.32□□□□□ -1.24
VPS39-213ENST00000570062 TIAF1O95411 115 aa7.32□□□□□ -1.24
VPS39-213ENST00000570062 EPXP11678 715 aa7.32□□□□□ -1.24
VPS39-213ENST00000570062 CCL4P13236 92 aa7.32□□□□□ -1.24
VPS39-213ENST00000570062 CHMP24386 653 aa7.32□□□□□ -1.24
VPS39-213ENST00000570062 ABCD3P28288 659 aa7.32□□□□□ -1.24
VPS39-213ENST00000570062 NBL1P41271 181 aa7.32□□□□□ -1.24
VPS39-213ENST00000570062 OMPP47874 163 aa7.32□□□□□ -1.24
VPS39-213ENST00000570062 GIPRP48546 466 aa7.32□□□□□ -1.24
VPS39-213ENST00000570062 SNTA1Q13424 505 aa7.32□□□□□ -1.24
VPS39-213ENST00000570062 TMED1Q13445 227 aa7.32□□□□□ -1.24
VPS39-213ENST00000570062 RAPSNQ13702 412 aa7.32□□□□□ -1.24
VPS39-213ENST00000570062 CBFBQ13951 182 aa7.32□□□□□ -1.24
VPS39-213ENST00000570062 SF3A2Q15428 464 aaKnown RBP7.32□□□□□ -1.24
VPS39-213ENST00000570062 ALG10BQ5I7T1 473 aa7.32□□□□□ -1.24
VPS39-213ENST00000570062 PLAG1Q6DJT9 500 aa7.32□□□□□ -1.24
VPS39-213ENST00000570062 OPN5Q6U736 354 aa7.32□□□□□ -1.24
VPS39-213ENST00000570062 PTCHD4Q6ZW05 846 aa7.32□□□□□ -1.24
VPS39-213ENST00000570062 NDUFAF7Q7L592 441 aa7.32□□□□□ -1.24
VPS39-213ENST00000570062 ZER1Q7Z7L7 766 aa7.32□□□□□ -1.24
VPS39-213ENST00000570062 B3GNT8Q7Z7M8 397 aa7.32□□□□□ -1.24
VPS39-213ENST00000570062 PIP4P1Q86T03 277 aa7.32□□□□□ -1.24
VPS39-213ENST00000570062 TMPRSS12Q86WS5 348 aa7.32□□□□□ -1.24
VPS39-213ENST00000570062 LACC1Q8IV20 430 aa7.32□□□□□ -1.24
VPS39-213ENST00000570062 C9orf40Q8IXQ3 194 aa7.32□□□□□ -1.24
VPS39-213ENST00000570062 PRSS58Q8IYP2 241 aa7.32□□□□□ -1.24
VPS39-213ENST00000570062 APCDD1LQ8NCL9 501 aa7.32□□□□□ -1.24
VPS39-213ENST00000570062 FAM71CQ8NEG0 241 aa7.32□□□□□ -1.24
VPS39-213ENST00000570062 OR4N2Q8NGD1 307 aa7.32□□□□□ -1.24
VPS39-213ENST00000570062 OR52L1Q8NGH7 329 aa7.32□□□□□ -1.24
VPS39-213ENST00000570062 OR4C3Q8NH37 302 aa7.32□□□□□ -1.24
VPS39-213ENST00000570062 PHOSPHO1Q8TCT1 267 aa7.32□□□□□ -1.24
VPS39-213ENST00000570062 RFKQ969G6 155 aa7.32□□□□□ -1.24
VPS39-213ENST00000570062 OMA1Q96E52 524 aa7.32□□□□□ -1.24
VPS39-213ENST00000570062 NODALQ96S42 347 aa7.32□□□□□ -1.24
VPS39-213ENST00000570062 ADOQ96SZ5 270 aa7.32□□□□□ -1.24
VPS39-213ENST00000570062 BARD1Q99728 777 aaKnown RBP7.32□□□□□ -1.24
VPS39-213ENST00000570062 NIPSNAP1Q9BPW8 284 aa7.32□□□□□ -1.24
VPS39-213ENST00000570062 TMEM43Q9BTV4 400 aa7.32□□□□□ -1.24
VPS39-213ENST00000570062 POLDIP3Q9BY77 421 aaKnown RBP7.32□□□□□ -1.24
VPS39-213ENST00000570062 RACGAP1Q9H0H5 632 aa7.32□□□□□ -1.24
VPS39-213ENST00000570062 DUSP21Q9H596 190 aa7.32□□□□□ -1.24
VPS39-213ENST00000570062 SLC25A19Q9HC21 320 aa7.32□□□□□ -1.24
VPS39-213ENST00000570062 APMAPQ9HDC9 416 aa7.32□□□□□ -1.24
VPS39-213ENST00000570062 MMP25Q9NPA2 562 aa7.32□□□□□ -1.24
VPS39-213ENST00000570062 MAN2C1Q9NTJ4 1040 aa7.32□□□□□ -1.24
VPS39-213ENST00000570062 IL20Q9NYY1 176 aa7.32□□□□□ -1.24
VPS39-213ENST00000570062 KCNE5Q9UJ90 142 aa7.32□□□□□ -1.24
VPS39-213ENST00000570062 SLC7A7Q9UM01 511 aa7.32□□□□□ -1.24
VPS39-213ENST00000570062 FARSAQ9Y285 508 aaKnown RBP7.32□□□□□ -1.24
VPS39-213ENST00000570062 PTRH2Q9Y3E5 179 aaKnown RBP7.32□□□□□ -1.24
VPS39-213ENST00000570062 RPL36Q9Y3U8 105 aaKnown RBP7.32□□□□□ -1.24
VPS39-213ENST00000570062 CHST2Q9Y4C5 530 aa7.32□□□□□ -1.24
VPS39-213ENST00000570062 PCDHGA6Q9Y5G7 932 aa7.32□□□□□ -1.24
VPS39-213ENST00000570062 MDC1Q14676 2089 aaKnown RBP7.32□□□□□ -1.24
VPS39-213ENST00000570062 CROCCQ5TZA2 2017 aa7.32□□□□□ -1.24
VPS39-213ENST00000570062 ACACBO00763 2458 aa7.32□□□□□ -1.24
VPS39-213ENST00000570062 A0A087WUJ7 227 aa7.31□□□□□ -1.24
VPS39-213ENST00000570062 A0A1B0GWA3 101 aa7.31□□□□□ -1.24
VPS39-213ENST00000570062 OR2W5A6NFC9 320 aa7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms