RNA–Protein interactions for RNA: ENST00000554928.1

SYNE2-214, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 3

Gene SYNE2, Length 1,048 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-214ENST00000554928 ZNF136P52737 540 aa11.12□□□□□ -0.63
SYNE2-214ENST00000554928 SUMO3P55854 103 aaPredicted RBP11.12□□□□□ -0.63
SYNE2-214ENST00000554928 TXNL4AP83876 142 aaKnown RBP11.12□□□□□ -0.63
SYNE2-214ENST00000554928 FOXF2Q12947 444 aa11.12□□□□□ -0.63
SYNE2-214ENST00000554928 FADDQ13158 208 aa11.12□□□□□ -0.63
SYNE2-214ENST00000554928 BCL2A1Q16548 175 aa11.12□□□□□ -0.63
SYNE2-214ENST00000554928 GCNT6Q5T4J0 391 aa11.12□□□□□ -0.63
SYNE2-214ENST00000554928 MRPL2Q5T653 305 aaKnown RBP11.12□□□□□ -0.63
SYNE2-214ENST00000554928 RIPPLY2Q5TAB7 128 aa11.12□□□□□ -0.63
SYNE2-214ENST00000554928 XKRXQ6PP77 449 aa11.12□□□□□ -0.63
SYNE2-214ENST00000554928 EIF3MQ7L2H7 374 aaKnown RBP11.12□□□□□ -0.63
SYNE2-214ENST00000554928 MTDHQ86UE4 582 aaKnown RBP11.12□□□□□ -0.63
SYNE2-214ENST00000554928 PTOV1Q86YD1 416 aa11.12□□□□□ -0.63
SYNE2-214ENST00000554928 CLIP4Q8N3C7 705 aa11.12□□□□□ -0.63
SYNE2-214ENST00000554928 OR52P1PQ8NH57 321 aa11.12□□□□□ -0.63
SYNE2-214ENST00000554928 TSPEARQ8WU66 669 aa11.12□□□□□ -0.63
SYNE2-214ENST00000554928 WDR60Q8WVS4 1066 aa11.12□□□□□ -0.63
SYNE2-214ENST00000554928 ZBTB8AQ96BR9 441 aa11.12□□□□□ -0.63
SYNE2-214ENST00000554928 ADGRG7Q96K78 797 aa11.12□□□□□ -0.63
SYNE2-214ENST00000554928 CCDC106Q9BWC9 280 aa11.12□□□□□ -0.63
SYNE2-214ENST00000554928 MTHFD2LQ9H903 347 aaPredicted RBP11.12□□□□□ -0.63
SYNE2-214ENST00000554928 ST6GALNAC1Q9NSC7 600 aaPredicted RBP11.12□□□□□ -0.63
SYNE2-214ENST00000554928 FAM53CQ9NYF3 392 aa11.12□□□□□ -0.63
SYNE2-214ENST00000554928 GMPR2Q9P2T1 348 aaKnown RBP11.12□□□□□ -0.63
SYNE2-214ENST00000554928 USP22Q9UPT9 525 aa11.12□□□□□ -0.63
SYNE2-214ENST00000554928 ZNF443Q9Y2A4 671 aaPredicted RBP11.12□□□□□ -0.63
SYNE2-214ENST00000554928 CAPN7Q9Y6W3 813 aa11.12□□□□□ -0.63
SYNE2-214ENST00000554928 TNFSF12-TNFSF13A0A0A6YY99 330 aa11.11□□□□□ -0.63
SYNE2-214ENST00000554928 GMNCA6NCL1 334 aa11.11□□□□□ -0.63
SYNE2-214ENST00000554928 MBD3L4A6NDZ8 208 aaPredicted RBP11.11□□□□□ -0.63
SYNE2-214ENST00000554928 MBD3L3A6NE82 208 aaPredicted RBP11.11□□□□□ -0.63
SYNE2-214ENST00000554928 MBD3L5A6NJ08 208 aaPredicted RBP11.11□□□□□ -0.63
SYNE2-214ENST00000554928 CD8B2A6NJW9 211 aa11.11□□□□□ -0.63
SYNE2-214ENST00000554928 EIF1AYO14602 144 aaKnown RBP11.11□□□□□ -0.63
SYNE2-214ENST00000554928 MRASO14807 208 aa11.11□□□□□ -0.63
SYNE2-214ENST00000554928 FRS3O43559 492 aa11.11□□□□□ -0.63
SYNE2-214ENST00000554928 SNX3O60493 162 aa11.11□□□□□ -0.63
SYNE2-214ENST00000554928 GCM2O75603 506 aaPredicted RBP11.11□□□□□ -0.63
SYNE2-214ENST00000554928 PGM3O95394 542 aa11.11□□□□□ -0.63
SYNE2-214ENST00000554928 CLDN14O95500 239 aa11.11□□□□□ -0.63
SYNE2-214ENST00000554928 HOXD4P09016 255 aaPredicted RBP11.11□□□□□ -0.63
SYNE2-214ENST00000554928 PRG2P13727 222 aa11.11□□□□□ -0.63
SYNE2-214ENST00000554928 NID1P14543 1247 aa11.11□□□□□ -0.63
SYNE2-214ENST00000554928 KLK2P20151 261 aa11.11□□□□□ -0.63
SYNE2-214ENST00000554928 AGAP20933 346 aa11.11□□□□□ -0.63
SYNE2-214ENST00000554928 HTR1EP28566 365 aa11.11□□□□□ -0.63
SYNE2-214ENST00000554928 SFTPDP35247 375 aa11.11□□□□□ -0.63
SYNE2-214ENST00000554928 PTGER4P35408 488 aa11.11□□□□□ -0.63
SYNE2-214ENST00000554928 SLC6A8P48029 635 aa11.11□□□□□ -0.63
SYNE2-214ENST00000554928 GZMMP51124 257 aa11.11□□□□□ -0.63
SYNE2-214ENST00000554928 CRISP3P54108 245 aa11.11□□□□□ -0.63
SYNE2-214ENST00000554928 SESN3P58005 492 aa11.11□□□□□ -0.63
SYNE2-214ENST00000554928 EEF1A1P68104 462 aaKnown RBP11.11□□□□□ -0.63
SYNE2-214ENST00000554928 TFF3Q07654 80 aa11.11□□□□□ -0.63
SYNE2-214ENST00000554928 ART3Q13508 389 aa11.11□□□□□ -0.63
SYNE2-214ENST00000554928 RABL3Q5HYI8 236 aa11.11□□□□□ -0.63
SYNE2-214ENST00000554928 LACC1Q8IV20 430 aa11.11□□□□□ -0.63
SYNE2-214ENST00000554928 GCNT2Q8N0V5 402 aa11.11□□□□□ -0.63
SYNE2-214ENST00000554928 EID3Q8N140 333 aa11.11□□□□□ -0.63
SYNE2-214ENST00000554928 RELL2Q8NC24 303 aaPredicted RBP11.11□□□□□ -0.63
SYNE2-214ENST00000554928 ATP6V1C2Q8NEY4 427 aa11.11□□□□□ -0.63
SYNE2-214ENST00000554928 TOR1AIP2Q8NFQ8 470 aa11.11□□□□□ -0.63
SYNE2-214ENST00000554928 MBD3L2Q8NHZ7 208 aaPredicted RBP11.11□□□□□ -0.63
SYNE2-214ENST00000554928 RCN3Q96D15 328 aa11.11□□□□□ -0.63
SYNE2-214ENST00000554928 WFDC6Q9BQY6 131 aa11.11□□□□□ -0.63
SYNE2-214ENST00000554928 PINK1Q9BXM7 581 aa11.11□□□□□ -0.63
SYNE2-214ENST00000554928 MYLK2Q9H1R3 596 aa11.11□□□□□ -0.63
SYNE2-214ENST00000554928 RAD21L1Q9H4I0 556 aa11.11□□□□□ -0.63
SYNE2-214ENST00000554928 PIF1Q9H611 641 aa11.11□□□□□ -0.63
SYNE2-214ENST00000554928 BCL2L10Q9HD36 194 aa11.11□□□□□ -0.63
SYNE2-214ENST00000554928 NPDC1Q9NQX5 325 aaPredicted RBP11.11□□□□□ -0.63
SYNE2-214ENST00000554928 PLA2G2EQ9NZK7 142 aa11.11□□□□□ -0.63
SYNE2-214ENST00000554928 SLC35A3Q9Y2D2 325 aa11.11□□□□□ -0.63
SYNE2-214ENST00000554928 AP4B1Q9Y6B7 739 aa11.11□□□□□ -0.63
SYNE2-214ENST00000554928 PHF3Q92576 2039 aaKnown RBP11.11□□□□□ -0.63
SYNE2-214ENST00000554928 SETXQ7Z333 2677 aaKnown RBP11.1□□□□□ -0.63
SYNE2-214ENST00000554928 HEATR5AQ86XA9 2040 aa11.1□□□□□ -0.63
SYNE2-214ENST00000554928 A0A0G2JPF8 293 aa11.1□□□□□ -0.63
SYNE2-214ENST00000554928 HNRNPCL2B2RXH8 293 aa11.1□□□□□ -0.63
SYNE2-214ENST00000554928 HNRNPCL3B7ZW38 293 aa11.1□□□□□ -0.63
SYNE2-214ENST00000554928 FAM47E-STBD1D6RA91 191 aa11.1□□□□□ -0.63
SYNE2-214ENST00000554928 ETV2O00321 342 aaPredicted RBP11.1□□□□□ -0.63
SYNE2-214ENST00000554928 TNFSF11O14788 317 aa11.1□□□□□ -0.63
SYNE2-214ENST00000554928 CXCL13O43927 109 aa11.1□□□□□ -0.63
SYNE2-214ENST00000554928 TPST1O60507 370 aa11.1□□□□□ -0.63
SYNE2-214ENST00000554928 HNRNPCL1O60812 293 aaKnown RBP11.1□□□□□ -0.63
SYNE2-214ENST00000554928 AQP8O94778 261 aa11.1□□□□□ -0.63
SYNE2-214ENST00000554928 DBIP07108 87 aaKnown RBP11.1□□□□□ -0.63
SYNE2-214ENST00000554928 HNRNPCL4P0DMR1 293 aa11.1□□□□□ -0.63
SYNE2-214ENST00000554928 IL7RP16871 459 aa11.1□□□□□ -0.63
SYNE2-214ENST00000554928 AQP1P29972 269 aa11.1□□□□□ -0.63
SYNE2-214ENST00000554928 CHRNB4P30926 498 aa11.1□□□□□ -0.63
SYNE2-214ENST00000554928 HOXC5Q00444 222 aa11.1□□□□□ -0.63
SYNE2-214ENST00000554928 CDK6Q00534 326 aa11.1□□□□□ -0.63
SYNE2-214ENST00000554928 CBFBQ13951 182 aa11.1□□□□□ -0.63
SYNE2-214ENST00000554928 SCARB2Q14108 478 aa11.1□□□□□ -0.63
SYNE2-214ENST00000554928 TRMT5Q32P41 509 aaKnown RBP11.1□□□□□ -0.63
SYNE2-214ENST00000554928 GLIPR1L2Q4G1C9 344 aa11.1□□□□□ -0.63
SYNE2-214ENST00000554928 SLC25A53Q5H9E4 307 aa11.1□□□□□ -0.63
SYNE2-214ENST00000554928 NANOGP8Q6NSW7 305 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms