RNA–Protein interactions for RNA: ENST00000544504.5

YBX3-215, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 583 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-215ENST00000544504 RPS6KB2Q9UBS0 482 aa8.7□□□□□ -1.02
YBX3-215ENST00000544504 RIMS3Q9UJD0 308 aa8.7□□□□□ -1.02
YBX3-215ENST00000544504 TMCC3Q9ULS5 477 aa8.7□□□□□ -1.02
YBX3-215ENST00000544504 APCP25054 2843 aa8.69□□□□□ -1.02
YBX3-215ENST00000544504 IGLV3-32A0A0A0MS00 114 aa8.69□□□□□ -1.02
YBX3-215ENST00000544504 TRAPPC13A5PLN9 417 aa8.69□□□□□ -1.02
YBX3-215ENST00000544504 FAM47E-STBD1D6RA91 191 aa8.69□□□□□ -1.02
YBX3-215ENST00000544504 M0R3H8 397 aa8.69□□□□□ -1.02
YBX3-215ENST00000544504 CASQ2O14958 399 aaPredicted RBP8.69□□□□□ -1.02
YBX3-215ENST00000544504 HCRTR2O43614 444 aa8.69□□□□□ -1.02
YBX3-215ENST00000544504 SCO2O43819 266 aa8.69□□□□□ -1.02
YBX3-215ENST00000544504 PRSS23O95084 383 aa8.69□□□□□ -1.02
YBX3-215ENST00000544504 GADD45GO95257 159 aa8.69□□□□□ -1.02
YBX3-215ENST00000544504 CLDN1O95832 211 aa8.69□□□□□ -1.02
YBX3-215ENST00000544504 P04436 131 aa8.69□□□□□ -1.02
YBX3-215ENST00000544504 H1F0P07305 194 aaKnown RBP8.69□□□□□ -1.02
YBX3-215ENST00000544504 UBTFL6P0CB48 400 aaPredicted RBP8.69□□□□□ -1.02
YBX3-215ENST00000544504 PGCP20142 388 aa8.69□□□□□ -1.02
YBX3-215ENST00000544504 FPR1P21462 350 aa8.69□□□□□ -1.02
YBX3-215ENST00000544504 DNAJA1P31689 397 aaKnown RBP8.69□□□□□ -1.02
YBX3-215ENST00000544504 GCKP35557 465 aa8.69□□□□□ -1.02
YBX3-215ENST00000544504 CASP3P42574 277 aa8.69□□□□□ -1.02
YBX3-215ENST00000544504 P2RX1P51575 399 aa8.69□□□□□ -1.02
YBX3-215ENST00000544504 SPIBQ01892 262 aa8.69□□□□□ -1.02
YBX3-215ENST00000544504 OC90Q02509 493 aaPredicted RBP8.69□□□□□ -1.02
YBX3-215ENST00000544504 SKP2Q13309 424 aa8.69□□□□□ -1.02
YBX3-215ENST00000544504 MFAP5Q13361 173 aa8.69□□□□□ -1.02
YBX3-215ENST00000544504 CBFBQ13951 182 aa8.69□□□□□ -1.02
YBX3-215ENST00000544504 KRTAP21-3Q3LHN1 58 aa8.69□□□□□ -1.02
YBX3-215ENST00000544504 SWT1Q5T5J6 900 aaKnown RBP8.69□□□□□ -1.02
YBX3-215ENST00000544504 C1QL3Q5VWW1 255 aa8.69□□□□□ -1.02
YBX3-215ENST00000544504 FBXW10Q5XX13 1052 aa8.69□□□□□ -1.02
YBX3-215ENST00000544504 FCRLBQ6BAA4 426 aa8.69□□□□□ -1.02
YBX3-215ENST00000544504 ZNF613Q6PF04 617 aa8.69□□□□□ -1.02
YBX3-215ENST00000544504 PLEKHM3Q6ZWE6 761 aa8.69□□□□□ -1.02
YBX3-215ENST00000544504 HMGN2P46Q86SG4 172 aa8.69□□□□□ -1.02
YBX3-215ENST00000544504 HIPK1Q86Z02 1210 aa8.69□□□□□ -1.02
YBX3-215ENST00000544504 ZDHHC13Q8IUH4 622 aa8.69□□□□□ -1.02
YBX3-215ENST00000544504 OFCC1Q8IZS5 231 aa8.69□□□□□ -1.02
YBX3-215ENST00000544504 BEST3Q8N1M1 668 aa8.69□□□□□ -1.02
YBX3-215ENST00000544504 TMCO5AQ8N6Q1 288 aa8.69□□□□□ -1.02
YBX3-215ENST00000544504 LSMEM1Q8N8F7 131 aa8.69□□□□□ -1.02
YBX3-215ENST00000544504 OR10G3Q8NGC4 313 aa8.69□□□□□ -1.02
YBX3-215ENST00000544504 OR6T1Q8NGN1 323 aa8.69□□□□□ -1.02
YBX3-215ENST00000544504 OR5M3Q8NGP4 307 aa8.69□□□□□ -1.02
YBX3-215ENST00000544504 B4GALNT2Q8NHY0 566 aa8.69□□□□□ -1.02
YBX3-215ENST00000544504 GRHL3Q8TE85 626 aa8.69□□□□□ -1.02
YBX3-215ENST00000544504 PHF10Q8WUB8 498 aaKnown RBP8.69□□□□□ -1.02
YBX3-215ENST00000544504 DNAJA4Q8WW22 397 aaPredicted RBP8.69□□□□□ -1.02
YBX3-215ENST00000544504 TM9SF4Q92544 642 aa8.69□□□□□ -1.02
YBX3-215ENST00000544504 CNOT9Q92600 299 aaKnown RBP8.69□□□□□ -1.02
YBX3-215ENST00000544504 EME1Q96AY2 570 aa8.69□□□□□ -1.02
YBX3-215ENST00000544504 ARSGQ96EG1 525 aa8.69□□□□□ -1.02
YBX3-215ENST00000544504 MPP4Q96JB8 637 aa8.69□□□□□ -1.02
YBX3-215ENST00000544504 NODALQ96S42 347 aa8.69□□□□□ -1.02
YBX3-215ENST00000544504 PKP2Q99959 881 aa8.69□□□□□ -1.02
YBX3-215ENST00000544504 ANGPTL4Q9BY76 406 aa8.69□□□□□ -1.02
YBX3-215ENST00000544504 PTGES2Q9H7Z7 377 aa8.69□□□□□ -1.02
YBX3-215ENST00000544504 KRCC1Q9NPI7 259 aaPredicted RBP8.69□□□□□ -1.02
YBX3-215ENST00000544504 SACM1LQ9NTJ5 587 aa8.69□□□□□ -1.02
YBX3-215ENST00000544504 RLIMQ9NVW2 624 aa8.69□□□□□ -1.02
YBX3-215ENST00000544504 GPR83Q9NYM4 423 aa8.69□□□□□ -1.02
YBX3-215ENST00000544504 PPP4R1LQ9P1A2 415 aa8.69□□□□□ -1.02
YBX3-215ENST00000544504 ACAD8Q9UKU7 415 aa8.69□□□□□ -1.02
YBX3-215ENST00000544504 SAMHD1Q9Y3Z3 626 aaKnown RBP8.69□□□□□ -1.02
YBX3-215ENST00000544504 PCDHGB6Q9Y5F9 930 aa8.69□□□□□ -1.02
YBX3-215ENST00000544504 WIF1Q9Y5W5 379 aa8.69□□□□□ -1.02
YBX3-215ENST00000544504 KCNMB2Q9Y691 235 aa8.69□□□□□ -1.02
YBX3-215ENST00000544504 CENPVL1A0A0U1RR11 272 aa8.68□□□□□ -1.02
YBX3-215ENST00000544504 A0A1W2PRQ8 180 aa8.68□□□□□ -1.02
YBX3-215ENST00000544504 HTR3EA5X5Y0 456 aa8.68□□□□□ -1.02
YBX3-215ENST00000544504 OR5H15A6NDH6 313 aa8.68□□□□□ -1.02
YBX3-215ENST00000544504 WIPF3A6NGB9 483 aa8.68□□□□□ -1.02
YBX3-215ENST00000544504 CLDN24A6NM45 220 aa8.68□□□□□ -1.02
YBX3-215ENST00000544504 TNFRSF11BO00300 401 aa8.68□□□□□ -1.02
YBX3-215ENST00000544504 PEX1O43933 1283 aa8.68□□□□□ -1.02
YBX3-215ENST00000544504 ZNF354AO60765 605 aaPredicted RBP8.68□□□□□ -1.02
YBX3-215ENST00000544504 CYP7B1O75881 506 aa8.68□□□□□ -1.02
YBX3-215ENST00000544504 EPPINO95925 133 aa8.68□□□□□ -1.02
YBX3-215ENST00000544504 MT-ND1P03886 318 aa8.68□□□□□ -1.02
YBX3-215ENST00000544504 ZNF23P17027 643 aa8.68□□□□□ -1.02
YBX3-215ENST00000544504 TNFRSF1BP20333 461 aa8.68□□□□□ -1.02
YBX3-215ENST00000544504 RRM2P31350 389 aa8.68□□□□□ -1.02
YBX3-215ENST00000544504 IFNGR2P38484 337 aa8.68□□□□□ -1.02
YBX3-215ENST00000544504 HTR3AP46098 478 aa8.68□□□□□ -1.02
YBX3-215ENST00000544504 CCL11P51671 97 aa8.68□□□□□ -1.02
YBX3-215ENST00000544504 CCR4P51679 360 aa8.68□□□□□ -1.02
YBX3-215ENST00000544504 ZNF136P52737 540 aa8.68□□□□□ -1.02
YBX3-215ENST00000544504 HMGA2P52926 109 aa8.68□□□□□ -1.02
YBX3-215ENST00000544504 SESN3P58005 492 aa8.68□□□□□ -1.02
YBX3-215ENST00000544504 EPS8Q12929 822 aa8.68□□□□□ -1.02
YBX3-215ENST00000544504 DGCR6Q14129 220 aa8.68□□□□□ -1.02
YBX3-215ENST00000544504 TRAM2Q15035 370 aa8.68□□□□□ -1.02
YBX3-215ENST00000544504 TRIP10Q15642 601 aa8.68□□□□□ -1.02
YBX3-215ENST00000544504 CD226Q15762 336 aa8.68□□□□□ -1.02
YBX3-215ENST00000544504 IQCCQ4KMZ1 466 aa8.68□□□□□ -1.02
YBX3-215ENST00000544504 ENTPD8Q5MY95 495 aa8.68□□□□□ -1.02
YBX3-215ENST00000544504 ATP1A1-AS1Q5TC04 95 aa8.68□□□□□ -1.02
YBX3-215ENST00000544504 B3GNTL1Q67FW5 361 aaPredicted RBP8.68□□□□□ -1.02
YBX3-215ENST00000544504 WBP2NLQ6ICG8 309 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms