RNA–Protein interactions for RNA: ENST00000540475.5

SEMA4D-223, Transcript of semaphorin 4D, human

TSL 3

Gene SEMA4D, Length 826 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SEMA4D-223	ENST00000540475	OR5AK3P	Q8NH89	298 aa		11.69	□□□□□ -0.54
SEMA4D-223	ENST00000540475	PPP1R14C	Q8TAE6	165 aa		11.69	□□□□□ -0.54
SEMA4D-223	ENST00000540475	CHMP6	Q96FZ7	201 aa		11.69	□□□□□ -0.54
SEMA4D-223	ENST00000540475	HS3ST6	Q96QI5	342 aa		11.69	□□□□□ -0.54
SEMA4D-223	ENST00000540475	TMEM204	Q9BSN7	226 aa		11.69	□□□□□ -0.54
SEMA4D-223	ENST00000540475	SRXN1	Q9BYN0	137 aa		11.69	□□□□□ -0.54
SEMA4D-223	ENST00000540475	DPY30	Q9C005	99 aa		11.69	□□□□□ -0.54
SEMA4D-223	ENST00000540475	TMEM185B	Q9H7F4	350 aa		11.69	□□□□□ -0.54
SEMA4D-223	ENST00000540475	BCO1	Q9HAY6	547 aa		11.69	□□□□□ -0.54
SEMA4D-223	ENST00000540475	FANCF	Q9NPI8	374 aa		11.69	□□□□□ -0.54
SEMA4D-223	ENST00000540475	POLE3	Q9NRF9	147 aa		11.69	□□□□□ -0.54
SEMA4D-223	ENST00000540475	KLHL13	Q9P2N7	655 aa		11.69	□□□□□ -0.54
SEMA4D-223	ENST00000540475	NOL12	Q9UGY1	213 aa	Known RBP eCLIP	11.69	□□□□□ -0.54
SEMA4D-223	ENST00000540475	ING1	Q9UK53	422 aa	Predicted RBP	11.69	□□□□□ -0.54
SEMA4D-223	ENST00000540475	CLEC4A	Q9UMR7	237 aa		11.69	□□□□□ -0.54
SEMA4D-223	ENST00000540475		V9GYY5	206 aa	Predicted RBP	11.69	□□□□□ -0.54
SEMA4D-223	ENST00000540475	ANK3	Q12955	4377 aa	Known RBP	11.68	□□□□□ -0.54
SEMA4D-223	ENST00000540475	RNF103-CHMP3	A0A140T963	221 aa		11.68	□□□□□ -0.54
SEMA4D-223	ENST00000540475	GTPBP1	O00178	669 aa	Known RBP	11.68	□□□□□ -0.54
SEMA4D-223	ENST00000540475	GCM2	O75603	506 aa	Predicted RBP	11.68	□□□□□ -0.54
SEMA4D-223	ENST00000540475	UBL4A	P11441	157 aa		11.68	□□□□□ -0.54
SEMA4D-223	ENST00000540475	PAX1	P15863	534 aa		11.68	□□□□□ -0.54
SEMA4D-223	ENST00000540475	LBP	P18428	481 aa		11.68	□□□□□ -0.54
SEMA4D-223	ENST00000540475	BGN	P21810	368 aa		11.68	□□□□□ -0.54
SEMA4D-223	ENST00000540475	UQCRC2	P22695	453 aa		11.68	□□□□□ -0.54
SEMA4D-223	ENST00000540475	SFTPD	P35247	375 aa		11.68	□□□□□ -0.54
SEMA4D-223	ENST00000540475	SLC18A1	P54219	525 aa		11.68	□□□□□ -0.54
SEMA4D-223	ENST00000540475	RPS26	P62854	115 aa	Known RBP	11.68	□□□□□ -0.54
SEMA4D-223	ENST00000540475	NKX6-1	P78426	367 aa	Predicted RBP	11.68	□□□□□ -0.54
SEMA4D-223	ENST00000540475	SELENBP1	Q13228	472 aa		11.68	□□□□□ -0.54
SEMA4D-223	ENST00000540475	STX3	Q13277	289 aa		11.68	□□□□□ -0.54
SEMA4D-223	ENST00000540475	CBFB	Q13951	182 aa		11.68	□□□□□ -0.54
SEMA4D-223	ENST00000540475	PDZK1	Q5T2W1	519 aa		11.68	□□□□□ -0.54
SEMA4D-223	ENST00000540475	SAXO2	Q658L1	398 aa		11.68	□□□□□ -0.54
SEMA4D-223	ENST00000540475	C20orf204	Q6ZNR8	217 aa		11.68	□□□□□ -0.54
SEMA4D-223	ENST00000540475	STK32C	Q86UX6	486 aa		11.68	□□□□□ -0.54
SEMA4D-223	ENST00000540475	SLC43A2	Q8N370	569 aa		11.68	□□□□□ -0.54
SEMA4D-223	ENST00000540475	VPS37A	Q8NEZ2	397 aa		11.68	□□□□□ -0.54
SEMA4D-223	ENST00000540475	ZFP90	Q8TF47	636 aa		11.68	□□□□□ -0.54
SEMA4D-223	ENST00000540475	ROBO4	Q8WZ75	1007 aa		11.68	□□□□□ -0.54
SEMA4D-223	ENST00000540475	ST8SIA1	Q92185	356 aa		11.68	□□□□□ -0.54
SEMA4D-223	ENST00000540475	NEURL3	Q96EH8	262 aa		11.68	□□□□□ -0.54
SEMA4D-223	ENST00000540475	PIK3IP1	Q96FE7	263 aa		11.68	□□□□□ -0.54
SEMA4D-223	ENST00000540475	POM121	Q96HA1	1249 aa		11.68	□□□□□ -0.54
SEMA4D-223	ENST00000540475	SLC35G5	Q96KT7	338 aa		11.68	□□□□□ -0.54
SEMA4D-223	ENST00000540475	TACO1	Q9BSH4	297 aa	Known RBP	11.68	□□□□□ -0.54
SEMA4D-223	ENST00000540475	HDHD5	Q9BXW7	423 aa		11.68	□□□□□ -0.54
SEMA4D-223	ENST00000540475	KLHL4	Q9C0H6	718 aa		11.68	□□□□□ -0.54
SEMA4D-223	ENST00000540475	EXD2	Q9NVH0	621 aa		11.68	□□□□□ -0.54
SEMA4D-223	ENST00000540475	BTNL2	Q9UIR0	455 aa		11.68	□□□□□ -0.54
SEMA4D-223	ENST00000540475	NSD1	Q96L73	2696 aa	Predicted RBP	11.68	□□□□□ -0.54
SEMA4D-223	ENST00000540475	ZAN	Q9Y493	2812 aa		11.68	□□□□□ -0.54
SEMA4D-223	ENST00000540475	CENPVL1	A0A0U1RR11	272 aa		11.67	□□□□□ -0.54
SEMA4D-223	ENST00000540475	PRAMEF27	A3QJZ7	478 aa		11.67	□□□□□ -0.54
SEMA4D-223	ENST00000540475	KIAA0513	O60268	411 aa		11.67	□□□□□ -0.54
SEMA4D-223	ENST00000540475	PRKD3	O94806	890 aa		11.67	□□□□□ -0.54
SEMA4D-223	ENST00000540475	NUDT14	O95848	222 aa		11.67	□□□□□ -0.54
SEMA4D-223	ENST00000540475	YES1	P07947	543 aa		11.67	□□□□□ -0.54
SEMA4D-223	ENST00000540475	ALDOC	P09972	364 aa	Known RBP	11.67	□□□□□ -0.54
SEMA4D-223	ENST00000540475	HOXB4	P17483	251 aa	Predicted RBP	11.67	□□□□□ -0.54
SEMA4D-223	ENST00000540475	PGM1	P36871	562 aa		11.67	□□□□□ -0.54
SEMA4D-223	ENST00000540475	CLNS1A	P54105	237 aa	Known RBP	11.67	□□□□□ -0.54
SEMA4D-223	ENST00000540475	BST1	Q10588	318 aa		11.67	□□□□□ -0.54
SEMA4D-223	ENST00000540475	FUT5	Q11128	374 aa		11.67	□□□□□ -0.54
SEMA4D-223	ENST00000540475	QPRT	Q15274	297 aa		11.67	□□□□□ -0.54
SEMA4D-223	ENST00000540475	MAPK14	Q16539	360 aa		11.67	□□□□□ -0.54
SEMA4D-223	ENST00000540475	NDUFAF6	Q330K2	333 aa		11.67	□□□□□ -0.54
SEMA4D-223	ENST00000540475	TMEM176B	Q3YBM2	270 aa	Predicted RBP	11.67	□□□□□ -0.54
SEMA4D-223	ENST00000540475	BEX5	Q5H9J7	111 aa		11.67	□□□□□ -0.54
SEMA4D-223	ENST00000540475	CEP85L	Q5SZL2	805 aa		11.67	□□□□□ -0.54
SEMA4D-223	ENST00000540475	ANKRD34A	Q69YU3	496 aa		11.67	□□□□□ -0.54
SEMA4D-223	ENST00000540475	TYW3	Q6IPR3	259 aa	Known RBP	11.67	□□□□□ -0.54
SEMA4D-223	ENST00000540475	TFAP2E	Q6VUC0	442 aa		11.67	□□□□□ -0.54
SEMA4D-223	ENST00000540475	FCRLA	Q7L513	359 aa		11.67	□□□□□ -0.54
SEMA4D-223	ENST00000540475	CLEC4F	Q8N1N0	589 aa		11.67	□□□□□ -0.54
SEMA4D-223	ENST00000540475	OR4A15	Q8NGL6	344 aa		11.67	□□□□□ -0.54
SEMA4D-223	ENST00000540475	ABHD3	Q8WU67	409 aa		11.67	□□□□□ -0.54
SEMA4D-223	ENST00000540475	CCDC115	Q96NT0	180 aa		11.67	□□□□□ -0.54
SEMA4D-223	ENST00000540475	NUF2	Q9BZD4	464 aa		11.67	□□□□□ -0.54
SEMA4D-223	ENST00000540475	OR51I1	Q9H343	314 aa		11.67	□□□□□ -0.54
SEMA4D-223	ENST00000540475	ACER3	Q9NUN7	267 aa		11.67	□□□□□ -0.54
SEMA4D-223	ENST00000540475	PNPO	Q9NVS9	261 aa		11.67	□□□□□ -0.54
SEMA4D-223	ENST00000540475	MKLN1	Q9UL63	735 aa		11.67	□□□□□ -0.54
SEMA4D-223	ENST00000540475	PCDHGB4	Q9UN71	923 aa		11.67	□□□□□ -0.54
SEMA4D-223	ENST00000540475	MBD3L2B	A0A1B0GVZ6	204 aa	Predicted RBP	11.66	□□□□□ -0.54
SEMA4D-223	ENST00000540475	SDHD	O14521	159 aa		11.66	□□□□□ -0.54
SEMA4D-223	ENST00000540475	CYTIP	O60759	359 aa		11.66	□□□□□ -0.54
SEMA4D-223	ENST00000540475	TMCC2	O75069	709 aa		11.66	□□□□□ -0.54
SEMA4D-223	ENST00000540475	SNN	O75324	88 aa	Predicted RBP	11.66	□□□□□ -0.54
SEMA4D-223	ENST00000540475	SOAT1	P35610	550 aa		11.66	□□□□□ -0.54
SEMA4D-223	ENST00000540475	NR1H2	P55055	460 aa		11.66	□□□□□ -0.54
SEMA4D-223	ENST00000540475	WDR4	P57081	412 aa	Known RBP	11.66	□□□□□ -0.54
SEMA4D-223	ENST00000540475	SESN3	P58005	492 aa		11.66	□□□□□ -0.54
SEMA4D-223	ENST00000540475	TXNL4A	P83876	142 aa	Known RBP	11.66	□□□□□ -0.54
SEMA4D-223	ENST00000540475	GPR68	Q15743	365 aa		11.66	□□□□□ -0.54
SEMA4D-223	ENST00000540475	EXOC3L2	Q2M3D2	409 aa		11.66	□□□□□ -0.54
SEMA4D-223	ENST00000540475	TIGD2	Q4W5G0	525 aa		11.66	□□□□□ -0.54
SEMA4D-223	ENST00000540475	SPANXN4	Q5MJ08	99 aa		11.66	□□□□□ -0.54
SEMA4D-223	ENST00000540475	TMEM201	Q5SNT2	666 aa		11.66	□□□□□ -0.54
SEMA4D-223	ENST00000540475	EIF3M	Q7L2H7	374 aa	Known RBP	11.66	□□□□□ -0.54

Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms