RNA–Protein interactions for RNA: ENST00000540230.5

UBE3B-212, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 1 (best) BASIC

Gene UBE3B, Length 1,541 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-212ENST00000540230 ZFP3Q96NJ6 502 aa13.53□□□□□ -0.24
UBE3B-212ENST00000540230 SFXN3Q9BWM7 321 aa13.53□□□□□ -0.24
UBE3B-212ENST00000540230 ZNF385DQ9H6B1 395 aa13.53□□□□□ -0.24
UBE3B-212ENST00000540230 RNF122Q9H9V4 155 aa13.53□□□□□ -0.24
UBE3B-212ENST00000540230 GPC6Q9Y625 555 aaPredicted RBP13.53□□□□□ -0.24
UBE3B-212ENST00000540230 AKAP9Q99996 3911 aa13.53□□□□□ -0.24
UBE3B-212ENST00000540230 TACC2O95359 2948 aa13.52□□□□□ -0.25
UBE3B-212ENST00000540230 SYT5O00445 386 aa13.52□□□□□ -0.25
UBE3B-212ENST00000540230 DNAJA2O60884 412 aa13.52□□□□□ -0.25
UBE3B-212ENST00000540230 NUDT7P0C024 238 aa13.52□□□□□ -0.25
UBE3B-212ENST00000540230 NR2F1P10589 423 aa13.52□□□□□ -0.25
UBE3B-212ENST00000540230 RPS4Y1P22090 263 aaKnown RBP13.52□□□□□ -0.25
UBE3B-212ENST00000540230 CRATP43155 626 aa13.52□□□□□ -0.25
UBE3B-212ENST00000540230 ATP4BP51164 291 aa13.52□□□□□ -0.25
UBE3B-212ENST00000540230 EEFSECP57772 596 aaKnown RBP13.52□□□□□ -0.25
UBE3B-212ENST00000540230 RPS3AP61247 264 aaKnown RBP13.52□□□□□ -0.25
UBE3B-212ENST00000540230 SF3A3Q12874 501 aaKnown RBP eCLIP13.52□□□□□ -0.25
UBE3B-212ENST00000540230 CBFBQ13951 182 aa13.52□□□□□ -0.25
UBE3B-212ENST00000540230 SQLEQ14534 574 aa13.52□□□□□ -0.25
UBE3B-212ENST00000540230 SGCBQ16585 318 aa13.52□□□□□ -0.25
UBE3B-212ENST00000540230 SLC25A53Q5H9E4 307 aa13.52□□□□□ -0.25
UBE3B-212ENST00000540230 CGB2Q6NT52 195 aa13.52□□□□□ -0.25
UBE3B-212ENST00000540230 PPP4R4Q6NUP7 873 aa13.52□□□□□ -0.25
UBE3B-212ENST00000540230 LRRC74BQ6ZQY2 392 aa13.52□□□□□ -0.25
UBE3B-212ENST00000540230 EIF3MQ7L2H7 374 aaKnown RBP13.52□□□□□ -0.25
UBE3B-212ENST00000540230 LILRA2Q8N149 483 aa13.52□□□□□ -0.25
UBE3B-212ENST00000540230 TOR1AIP2Q8NFQ8 470 aa13.52□□□□□ -0.25
UBE3B-212ENST00000540230 OR2V1Q8NHB1 315 aa13.52□□□□□ -0.25
UBE3B-212ENST00000540230 STON2Q8WXE9 905 aa13.52□□□□□ -0.25
UBE3B-212ENST00000540230 CNOT9Q92600 299 aaKnown RBP13.52□□□□□ -0.25
UBE3B-212ENST00000540230 RNASE6Q93091 150 aaKnown RBP13.52□□□□□ -0.25
UBE3B-212ENST00000540230 KLHL15Q96M94 604 aa13.52□□□□□ -0.25
UBE3B-212ENST00000540230 LIPT1Q9Y234 373 aa13.52□□□□□ -0.25
UBE3B-212ENST00000540230 ZNF175Q9Y473 711 aa13.52□□□□□ -0.25
UBE3B-212ENST00000540230 PDZD2O15018 2839 aa13.51□□□□□ -0.25
UBE3B-212ENST00000540230 A0A0G2JND7 137 aa13.51□□□□□ -0.25
UBE3B-212ENST00000540230 ETV2O00321 342 aaPredicted RBP13.51□□□□□ -0.25
UBE3B-212ENST00000540230 ADAMDEC1O15204 470 aa13.51□□□□□ -0.25
UBE3B-212ENST00000540230 BCHEP06276 602 aa13.51□□□□□ -0.25
UBE3B-212ENST00000540230 NCF2P19878 526 aaPredicted RBP13.51□□□□□ -0.25
UBE3B-212ENST00000540230 ELK4P28324 431 aa13.51□□□□□ -0.25
UBE3B-212ENST00000540230 ADH6P28332 368 aa13.51□□□□□ -0.25
UBE3B-212ENST00000540230 EIF1P41567 113 aaKnown RBP13.51□□□□□ -0.25
UBE3B-212ENST00000540230 KIR2DL2P43627 348 aaPredicted RBP13.51□□□□□ -0.25
UBE3B-212ENST00000540230 ANXA11P50995 505 aaKnown RBP13.51□□□□□ -0.25
UBE3B-212ENST00000540230 DSTNP60981 165 aa13.51□□□□□ -0.25
UBE3B-212ENST00000540230 SIRPAP78324 504 aa13.51□□□□□ -0.25
UBE3B-212ENST00000540230 KCNJ10P78508 379 aa13.51□□□□□ -0.25
UBE3B-212ENST00000540230 TLE4Q04727 773 aa13.51□□□□□ -0.25
UBE3B-212ENST00000540230 GUSBP1Q15486 140 aa13.51□□□□□ -0.25
UBE3B-212ENST00000540230 RPS26P11Q5JNZ5 115 aaPredicted RBP13.51□□□□□ -0.25
UBE3B-212ENST00000540230 LRIF1Q5T3J3 769 aa13.51□□□□□ -0.25
UBE3B-212ENST00000540230 ESPNLQ6ZVH7 1005 aa13.51□□□□□ -0.25
UBE3B-212ENST00000540230 ATP6V1C2Q8NEY4 427 aa13.51□□□□□ -0.25
UBE3B-212ENST00000540230 STARD4Q96DR4 205 aa13.51□□□□□ -0.25
UBE3B-212ENST00000540230 C14orf79Q96F83 325 aa13.51□□□□□ -0.25
UBE3B-212ENST00000540230 SRXN1Q9BYN0 137 aa13.51□□□□□ -0.25
UBE3B-212ENST00000540230 COQ10BQ9H8M1 238 aa13.51□□□□□ -0.25
UBE3B-212ENST00000540230 P2RX2Q9UBL9 471 aa13.51□□□□□ -0.25
UBE3B-212ENST00000540230 CLEC4AQ9UMR7 237 aa13.51□□□□□ -0.25
UBE3B-212ENST00000540230 SLC35A3Q9Y2D2 325 aa13.51□□□□□ -0.25
UBE3B-212ENST00000540230 A0A096LPI6 279 aa13.5□□□□□ -0.25
UBE3B-212ENST00000540230 AGAP5A6NIR3 686 aa13.5□□□□□ -0.25
UBE3B-212ENST00000540230 CLIC1O00299 241 aa13.5□□□□□ -0.25
UBE3B-212ENST00000540230 AP3D1O14617 1153 aa13.5□□□□□ -0.25
UBE3B-212ENST00000540230 TFPTP0C1Z6 253 aa13.5□□□□□ -0.25
UBE3B-212ENST00000540230 NID1P14543 1247 aa13.5□□□□□ -0.25
UBE3B-212ENST00000540230 ME2P23368 584 aa13.5□□□□□ -0.25
UBE3B-212ENST00000540230 RYKP34925 604 aa13.5□□□□□ -0.25
UBE3B-212ENST00000540230 SESN3P58005 492 aa13.5□□□□□ -0.25
UBE3B-212ENST00000540230 TXNL4AP83876 142 aaKnown RBP13.5□□□□□ -0.25
UBE3B-212ENST00000540230 GUCY1A3Q02108 690 aa13.5□□□□□ -0.25
UBE3B-212ENST00000540230 RGNQ15493 299 aa13.5□□□□□ -0.25
UBE3B-212ENST00000540230 HBMQ6B0K9 141 aa13.5□□□□□ -0.25
UBE3B-212ENST00000540230 BTLAQ7Z6A9 289 aa13.5□□□□□ -0.25
UBE3B-212ENST00000540230 CNEP1R1Q8N9A8 125 aa13.5□□□□□ -0.25
UBE3B-212ENST00000540230 SLC38A5Q8WUX1 472 aa13.5□□□□□ -0.25
UBE3B-212ENST00000540230 OIT3Q8WWZ8 545 aa13.5□□□□□ -0.25
UBE3B-212ENST00000540230 MAL2Q969L2 176 aa13.5□□□□□ -0.25
UBE3B-212ENST00000540230 TMEM19Q96HH6 336 aa13.5□□□□□ -0.25
UBE3B-212ENST00000540230 MRGPRX4Q96LA9 322 aa13.5□□□□□ -0.25
UBE3B-212ENST00000540230 IKZF5Q9H5V7 419 aa13.5□□□□□ -0.25
UBE3B-212ENST00000540230 ST6GALNAC1Q9NSC7 600 aaPredicted RBP13.5□□□□□ -0.25
UBE3B-212ENST00000540230 FGFR1OP2Q9NVK5 253 aa13.5□□□□□ -0.25
UBE3B-212ENST00000540230 DNAJB12Q9NXW2 375 aaKnown RBP13.5□□□□□ -0.25
UBE3B-212ENST00000540230 GALNT8Q9NY28 637 aa13.5□□□□□ -0.25
UBE3B-212ENST00000540230 VAPAQ9P0L0 249 aa13.5□□□□□ -0.25
UBE3B-212ENST00000540230 ANKHD1Q8IWZ3 2542 aaKnown RBP13.5□□□□□ -0.25
UBE3B-212ENST00000540230 MPDZO75970 2070 aa13.5□□□□□ -0.25
UBE3B-212ENST00000540230 DSPPQ9NZW4 1301 aa13.5□□□□□ -0.25
UBE3B-212ENST00000540230 TRBV5-3A0A0A0MS03 114 aa13.49□□□□□ -0.25
UBE3B-212ENST00000540230 A0A1W2PNR3 127 aa13.49□□□□□ -0.25
UBE3B-212ENST00000540230 SSTR2P30874 369 aa13.49□□□□□ -0.25
UBE3B-212ENST00000540230 MYBPHQ13203 477 aa13.49□□□□□ -0.25
UBE3B-212ENST00000540230 TMEM176BQ3YBM2 270 aaPredicted RBP13.49□□□□□ -0.25
UBE3B-212ENST00000540230 MRPL2Q5T653 305 aaKnown RBP13.49□□□□□ -0.25
UBE3B-212ENST00000540230 OR2A2Q6IF42 318 aa13.49□□□□□ -0.25
UBE3B-212ENST00000540230 VRK2Q86Y07 508 aa13.49□□□□□ -0.25
UBE3B-212ENST00000540230 WDR60Q8WVS4 1066 aa13.49□□□□□ -0.25
UBE3B-212ENST00000540230 OSTF1Q92882 214 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms