RNA–Protein interactions for RNA: ENST00000540010.1

TRAF1-202, Transcript of TNF receptor associated factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF1, Length 4,303 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-202ENST00000540010 ACSM3Q53FZ2 586 aa9.32□□□□□ -0.92
TRAF1-202ENST00000540010 ULK3Q6PHR2 472 aa9.32□□□□□ -0.92
TRAF1-202ENST00000540010 CHRDL2Q6WN34 429 aa9.32□□□□□ -0.92
TRAF1-202ENST00000540010 SLC9B2Q86UD5 537 aa9.32□□□□□ -0.92
TRAF1-202ENST00000540010 RBM45Q8IUH3 476 aaKnown RBP9.32□□□□□ -0.92
TRAF1-202ENST00000540010 SMRP1Q8NCR6 262 aa9.32□□□□□ -0.92
TRAF1-202ENST00000540010 OR5W2Q8NH69 310 aa9.32□□□□□ -0.92
TRAF1-202ENST00000540010 GAS2L1Q99501 681 aaPredicted RBP9.32□□□□□ -0.92
TRAF1-202ENST00000540010 DUSP21Q9H596 190 aa9.32□□□□□ -0.92
TRAF1-202ENST00000540010 SLA2Q9H6Q3 261 aa9.32□□□□□ -0.92
TRAF1-202ENST00000540010 MED20Q9H944 212 aa9.32□□□□□ -0.92
TRAF1-202ENST00000540010 NTN4Q9HB63 628 aa9.32□□□□□ -0.92
TRAF1-202ENST00000540010 MEIS3P1A6NDR6 274 aa9.32□□□□□ -0.92
TRAF1-202ENST00000540010 ZNF878C9JN71 531 aa9.32□□□□□ -0.92
TRAF1-202ENST00000540010 NPIPB8E9PQR5 432 aa9.32□□□□□ -0.92
TRAF1-202ENST00000540010 KCNJ13O60928 360 aa9.32□□□□□ -0.92
TRAF1-202ENST00000540010 RBMXL2O75526 392 aaKnown RBP9.32□□□□□ -0.92
TRAF1-202ENST00000540010 SCGB1D2O95969 90 aa9.32□□□□□ -0.92
TRAF1-202ENST00000540010 CYB5AP00167 134 aa9.32□□□□□ -0.92
TRAF1-202ENST00000540010 TPMTP51580 245 aa9.32□□□□□ -0.92
TRAF1-202ENST00000540010 OC90Q02509 493 aaPredicted RBP9.32□□□□□ -0.92
TRAF1-202ENST00000540010 MLLT11Q13015 90 aaPredicted RBP9.32□□□□□ -0.92
TRAF1-202ENST00000540010 SLC14A1Q13336 389 aa9.32□□□□□ -0.92
TRAF1-202ENST00000540010 RPE65Q16518 533 aa9.32□□□□□ -0.92
TRAF1-202ENST00000540010 DECR1Q16698 335 aa9.32□□□□□ -0.92
TRAF1-202ENST00000540010 ZNF658BQ4V348 819 aaPredicted RBP9.32□□□□□ -0.92
TRAF1-202ENST00000540010 TTLL10Q6ZVT0 673 aa9.32□□□□□ -0.92
TRAF1-202ENST00000540010 ACOT4Q8N9L9 421 aa9.32□□□□□ -0.92
TRAF1-202ENST00000540010 MMABQ96EY8 250 aaPredicted RBP9.32□□□□□ -0.92
TRAF1-202ENST00000540010 PDXPQ96GD0 296 aa9.32□□□□□ -0.92
TRAF1-202ENST00000540010 LMF1Q96S06 567 aa9.32□□□□□ -0.92
TRAF1-202ENST00000540010 CMKLR1Q99788 373 aa9.32□□□□□ -0.92
TRAF1-202ENST00000540010 C11orf54Q9H0W9 315 aaPredicted RBP9.32□□□□□ -0.92
TRAF1-202ENST00000540010 OR51J1Q9H342 316 aa9.32□□□□□ -0.92
TRAF1-202ENST00000540010 TXNL4BQ9NX01 149 aaKnown RBP9.32□□□□□ -0.92
TRAF1-202ENST00000540010 CYP8B1Q9UNU6 501 aa9.32□□□□□ -0.92
TRAF1-202ENST00000540010 DOCK8Q8NF50 2099 aa9.32□□□□□ -0.92
TRAF1-202ENST00000540010 RNF13O43567 381 aa9.32□□□□□ -0.92
TRAF1-202ENST00000540010 COQ9O75208 318 aa9.32□□□□□ -0.92
TRAF1-202ENST00000540010 GATBO75879 557 aaKnown RBP9.32□□□□□ -0.92
TRAF1-202ENST00000540010 SEMA4FO95754 770 aa9.32□□□□□ -0.92
TRAF1-202ENST00000540010 ALDOBP05062 364 aa9.32□□□□□ -0.92
TRAF1-202ENST00000540010 ZNF20P17024 532 aa9.32□□□□□ -0.92
TRAF1-202ENST00000540010 LTBRP36941 435 aa9.32□□□□□ -0.92
TRAF1-202ENST00000540010 SHC2P98077 582 aa9.32□□□□□ -0.92
TRAF1-202ENST00000540010 CHRNEQ04844 493 aa9.32□□□□□ -0.92
TRAF1-202ENST00000540010 PRDX1Q06830 199 aaKnown RBP9.32□□□□□ -0.92
TRAF1-202ENST00000540010 RAB40BQ12829 278 aa9.32□□□□□ -0.92
TRAF1-202ENST00000540010 GAB1Q13480 694 aa9.32□□□□□ -0.92
TRAF1-202ENST00000540010 NKG7Q16617 165 aa9.32□□□□□ -0.92
TRAF1-202ENST00000540010 DEFB110Q30KQ9 67 aa9.32□□□□□ -0.92
TRAF1-202ENST00000540010 PYHIN1Q6K0P9 492 aa9.32□□□□□ -0.92
TRAF1-202ENST00000540010 COMMD7Q86VX2 200 aa9.32□□□□□ -0.92
TRAF1-202ENST00000540010 SDR9C7Q8NEX9 313 aa9.32□□□□□ -0.92
TRAF1-202ENST00000540010 C15orf40Q8WUR7 153 aa9.32□□□□□ -0.92
TRAF1-202ENST00000540010 OR1E3Q8WZA6 343 aa9.32□□□□□ -0.92
TRAF1-202ENST00000540010 NR4A3Q92570 626 aa9.32□□□□□ -0.92
TRAF1-202ENST00000540010 MOAP1Q96BY2 351 aa9.32□□□□□ -0.92
TRAF1-202ENST00000540010 C16orf58Q96GQ5 468 aa9.32□□□□□ -0.92
TRAF1-202ENST00000540010 SLC6A7Q99884 636 aa9.32□□□□□ -0.92
TRAF1-202ENST00000540010 RBM38Q9H0Z9 239 aaKnown RBP9.32□□□□□ -0.92
TRAF1-202ENST00000540010 MTHFD2LQ9H903 347 aaPredicted RBP9.32□□□□□ -0.92
TRAF1-202ENST00000540010 MYNNQ9NPC7 610 aa9.32□□□□□ -0.92
TRAF1-202ENST00000540010 VNN3Q9NY84 501 aa9.32□□□□□ -0.92
TRAF1-202ENST00000540010 SLC17A4Q9Y2C5 497 aa9.32□□□□□ -0.92
TRAF1-202ENST00000540010 TRAPPC13A5PLN9 417 aa9.31□□□□□ -0.92
TRAF1-202ENST00000540010 POM121CA8CG34 1229 aa9.31□□□□□ -0.92
TRAF1-202ENST00000540010 TEX46H3BTG2 121 aa9.31□□□□□ -0.92
TRAF1-202ENST00000540010 SPDEFO95238 335 aa9.31□□□□□ -0.92
TRAF1-202ENST00000540010 PLGP00747 810 aaPredicted RBP9.31□□□□□ -0.92
TRAF1-202ENST00000540010 IL1AP01583 271 aa9.31□□□□□ -0.92
TRAF1-202ENST00000540010 MAPK3P27361 379 aaPredicted RBP9.31□□□□□ -0.92
TRAF1-202ENST00000540010 ACTC1P68032 377 aa9.31□□□□□ -0.92
TRAF1-202ENST00000540010 ACTA1P68133 377 aa9.31□□□□□ -0.92
TRAF1-202ENST00000540010 CTBSQ01459 385 aa9.31□□□□□ -0.92
TRAF1-202ENST00000540010 SF3A2Q15428 464 aaKnown RBP9.31□□□□□ -0.92
TRAF1-202ENST00000540010 WDR45BQ5MNZ6 344 aa9.31□□□□□ -0.92
TRAF1-202ENST00000540010 PAQR6Q6TCH4 344 aa9.31□□□□□ -0.92
TRAF1-202ENST00000540010 GDPD3Q7L5L3 318 aa9.31□□□□□ -0.92
TRAF1-202ENST00000540010 KIF18BQ86Y91 864 aa9.31□□□□□ -0.92
TRAF1-202ENST00000540010 ZNF527Q8NB42 609 aa9.31□□□□□ -0.92
TRAF1-202ENST00000540010 WDR34Q96EX3 536 aa9.31□□□□□ -0.92
TRAF1-202ENST00000540010 ZC3H10Q96K80 434 aaKnown RBP9.31□□□□□ -0.92
TRAF1-202ENST00000540010 NEDD4LQ96PU5 975 aa9.31□□□□□ -0.92
TRAF1-202ENST00000540010 ACTR6Q9GZN1 396 aa9.31□□□□□ -0.92
TRAF1-202ENST00000540010 CXorf36Q9H7Y0 433 aa9.31□□□□□ -0.92
TRAF1-202ENST00000540010 CACNG2Q9Y698 323 aa9.31□□□□□ -0.92
TRAF1-202ENST00000540010 TRAV18A0A075B6X5 111 aa9.31□□□□□ -0.92
TRAF1-202ENST00000540010 DISC1C4P0D8 188 aa9.31□□□□□ -0.92
TRAF1-202ENST00000540010 RFPL3O75679 317 aa9.31□□□□□ -0.92
TRAF1-202ENST00000540010 TFP02787 698 aa9.31□□□□□ -0.92
TRAF1-202ENST00000540010 TEAD1P28347 426 aa9.31□□□□□ -0.92
TRAF1-202ENST00000540010 WNT3P56703 355 aa9.31□□□□□ -0.92
TRAF1-202ENST00000540010 NFATC4Q14934 902 aa9.31□□□□□ -0.92
TRAF1-202ENST00000540010 ZNF385BQ569K4 471 aa9.31□□□□□ -0.92
TRAF1-202ENST00000540010 LRRC56Q8IYG6 542 aaPredicted RBP9.31□□□□□ -0.92
TRAF1-202ENST00000540010 TSNAXQ99598 290 aaKnown RBP9.31□□□□□ -0.92
TRAF1-202ENST00000540010 NEURL2Q9BR09 285 aa9.31□□□□□ -0.92
TRAF1-202ENST00000540010 ST6GALNAC1Q9NSC7 600 aaPredicted RBP9.31□□□□□ -0.92
TRAF1-202ENST00000540010 TRBV5-3A0A0A0MS03 114 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms