RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 ELP6Q0PNE2 266 aa1.99□□□□□ -2.09
CD44-238ENST00000534296 ST3GAL3Q11203 375 aa1.99□□□□□ -2.09
CD44-238ENST00000534296 SNTB2Q13425 540 aaKnown RBP1.99□□□□□ -2.09
CD44-238ENST00000534296 ARL6IP1Q15041 203 aa1.99□□□□□ -2.09
CD44-238ENST00000534296 TRIM16LQ309B1 348 aa1.99□□□□□ -2.09
CD44-238ENST00000534296 NADK2Q4G0N4 442 aa1.99□□□□□ -2.09
CD44-238ENST00000534296 EOGTQ5NDL2 527 aa1.99□□□□□ -2.09
CD44-238ENST00000534296 RABGAP1LQ5R372 815 aa1.99□□□□□ -2.09
CD44-238ENST00000534296 CCDC137Q6PK04 289 aaKnown RBP1.99□□□□□ -2.09
CD44-238ENST00000534296 Q6ZVH6 145 aa1.99□□□□□ -2.09
CD44-238ENST00000534296 CYS1Q717R9 158 aa1.99□□□□□ -2.09
CD44-238ENST00000534296 ARMCX2Q7L311 632 aa1.99□□□□□ -2.09
CD44-238ENST00000534296 ZNF589Q86UQ0 364 aaPredicted RBP1.99□□□□□ -2.09
CD44-238ENST00000534296 KRTAP11-1Q8IUC1 163 aa1.99□□□□□ -2.09
CD44-238ENST00000534296 ZDHHC21Q8IVQ6 265 aa1.99□□□□□ -2.09
CD44-238ENST00000534296 GPR65Q8IYL9 337 aa1.99□□□□□ -2.09
CD44-238ENST00000534296 ALLCQ8N6M5 410 aa1.99□□□□□ -2.09
CD44-238ENST00000534296 OR10H4Q8NGA5 316 aa1.99□□□□□ -2.09
CD44-238ENST00000534296 M1APQ8TC57 530 aa1.99□□□□□ -2.09
CD44-238ENST00000534296 ADAMTS16Q8TE57 1224 aa1.99□□□□□ -2.09
CD44-238ENST00000534296 SETD7Q8WTS6 366 aaKnown RBP1.99□□□□□ -2.09
CD44-238ENST00000534296 SLC25A38Q96DW6 304 aa1.99□□□□□ -2.09
CD44-238ENST00000534296 FAM122AQ96E09 287 aa1.99□□□□□ -2.09
CD44-238ENST00000534296 RPRD1AQ96P16 312 aaPredicted RBP1.99□□□□□ -2.09
CD44-238ENST00000534296 SLC39A3Q9BRY0 314 aa1.99□□□□□ -2.09
CD44-238ENST00000534296 NMUR2Q9GZQ4 415 aa1.99□□□□□ -2.09
CD44-238ENST00000534296 NAT10Q9H0A0 1025 aaKnown RBP1.99□□□□□ -2.09
CD44-238ENST00000534296 TMEM117Q9H0C3 514 aa1.99□□□□□ -2.09
CD44-238ENST00000534296 Q9H3A6 140 aa1.99□□□□□ -2.09
CD44-238ENST00000534296 NARFLQ9H6Q4 476 aa1.99□□□□□ -2.09
CD44-238ENST00000534296 NUDT15Q9NV35 164 aa1.99□□□□□ -2.09
CD44-238ENST00000534296 PAK1IP1Q9NWT1 392 aaPredicted RBP1.99□□□□□ -2.09
CD44-238ENST00000534296 CD274Q9NZQ7 290 aa1.99□□□□□ -2.09
CD44-238ENST00000534296 OR1A1Q9P1Q5 309 aa1.99□□□□□ -2.09
CD44-238ENST00000534296 DCDC2Q9UHG0 476 aa1.99□□□□□ -2.09
CD44-238ENST00000534296 TMCO1Q9UM00 188 aa1.99□□□□□ -2.09
CD44-238ENST00000534296 L3MBTL1Q9Y468 752 aa1.99□□□□□ -2.09
CD44-238ENST00000534296 ANKRD30BQ9BXX2 1392 aa1.98□□□□□ -2.09
CD44-238ENST00000534296 CROCCQ5TZA2 2017 aa1.98□□□□□ -2.09
CD44-238ENST00000534296 GPR89AB7ZAQ6 455 aa1.98□□□□□ -2.09
CD44-238ENST00000534296 K7EQM0 130 aa1.98□□□□□ -2.09
CD44-238ENST00000534296 KIF2AO00139 706 aaPredicted RBP1.98□□□□□ -2.09
CD44-238ENST00000534296 SULT2B1O00204 365 aa1.98□□□□□ -2.09
CD44-238ENST00000534296 MPHOSPH10O00566 681 aaKnown RBP1.98□□□□□ -2.09
CD44-238ENST00000534296 CDX4O14627 284 aaPredicted RBP1.98□□□□□ -2.09
CD44-238ENST00000534296 RTL8CO15255 209 aa1.98□□□□□ -2.09
CD44-238ENST00000534296 CTAGE5O15320 804 aa1.98□□□□□ -2.09
CD44-238ENST00000534296 SCRG1O75711 98 aa1.98□□□□□ -2.09
CD44-238ENST00000534296 TM7SF2O76062 418 aa1.98□□□□□ -2.09
CD44-238ENST00000534296 UFL1O94874 794 aa1.98□□□□□ -2.09
CD44-238ENST00000534296 ACTL6AO96019 429 aa1.98□□□□□ -2.09
CD44-238ENST00000534296 IGHG3P01860 377 aa1.98□□□□□ -2.09
CD44-238ENST00000534296 CHRNA1P02708 482 aa1.98□□□□□ -2.09
CD44-238ENST00000534296 KRT8P05787 483 aa1.98□□□□□ -2.09
CD44-238ENST00000534296 GPR89BP0CG08 455 aa1.98□□□□□ -2.09
CD44-238ENST00000534296 GCFC2P16383 781 aaKnown RBP1.98□□□□□ -2.09
CD44-238ENST00000534296 XRCC1P18887 633 aaPredicted RBP1.98□□□□□ -2.09
CD44-238ENST00000534296 PGCP20142 388 aa1.98□□□□□ -2.09
CD44-238ENST00000534296 ZP3P21754 424 aa1.98□□□□□ -2.09
CD44-238ENST00000534296 OTX2P32243 289 aa1.98□□□□□ -2.09
CD44-238ENST00000534296 UGT1A5P35504 534 aa1.98□□□□□ -2.09
CD44-238ENST00000534296 HPCAL1P37235 193 aa1.98□□□□□ -2.09
CD44-238ENST00000534296 WNT4P56705 351 aa1.98□□□□□ -2.09
CD44-238ENST00000534296 STX17P56962 302 aa1.98□□□□□ -2.09
CD44-238ENST00000534296 HMGN5P82970 282 aaKnown RBP1.98□□□□□ -2.09
CD44-238ENST00000534296 FGL1Q08830 312 aa1.98□□□□□ -2.09
CD44-238ENST00000534296 CCDC173Q0VFZ6 552 aa1.98□□□□□ -2.09
CD44-238ENST00000534296 RAB40BQ12829 278 aa1.98□□□□□ -2.09
CD44-238ENST00000534296 LAGE3Q14657 143 aa1.98□□□□□ -2.09
CD44-238ENST00000534296 GANABQ14697 944 aaKnown RBP1.98□□□□□ -2.09
CD44-238ENST00000534296 LRRC36Q1X8D7 754 aa1.98□□□□□ -2.09
CD44-238ENST00000534296 LINC01620Q4KN68 170 aa1.98□□□□□ -2.09
CD44-238ENST00000534296 SBK1Q52WX2 424 aa1.98□□□□□ -2.09
CD44-238ENST00000534296 OR2B11Q5JQS5 317 aa1.98□□□□□ -2.09
CD44-238ENST00000534296 SAMD4BQ5PRF9 694 aaKnown RBP1.98□□□□□ -2.09
CD44-238ENST00000534296 ATF7IP2Q5U623 682 aa1.98□□□□□ -2.09
CD44-238ENST00000534296 STAC2Q6ZMT1 411 aa1.98□□□□□ -2.09
CD44-238ENST00000534296 GDPD3Q7L5L3 318 aa1.98□□□□□ -2.09
CD44-238ENST00000534296 TRPM8Q7Z2W7 1104 aa1.98□□□□□ -2.09
CD44-238ENST00000534296 SERPINA9Q86WD7 417 aa1.98□□□□□ -2.09
CD44-238ENST00000534296 FBXO16Q8IX29 292 aaPredicted RBP1.98□□□□□ -2.09
CD44-238ENST00000534296 SLC35F2Q8IXU6 374 aa1.98□□□□□ -2.09
CD44-238ENST00000534296 UBQLNLQ8IYU4 475 aa1.98□□□□□ -2.09
CD44-238ENST00000534296 CLEC4FQ8N1N0 589 aa1.98□□□□□ -2.09
CD44-238ENST00000534296 OR51G2Q8NGK0 314 aa1.98□□□□□ -2.09
CD44-238ENST00000534296 OR9A4Q8NGU2 314 aa1.98□□□□□ -2.09
CD44-238ENST00000534296 LINC01006Q8NI28 216 aa1.98□□□□□ -2.09
CD44-238ENST00000534296 DNAJA4Q8WW22 397 aaPredicted RBP1.98□□□□□ -2.09
CD44-238ENST00000534296 RPL3LQ92901 407 aaKnown RBP1.98□□□□□ -2.09
CD44-238ENST00000534296 RAB7BQ96AH8 199 aa1.98□□□□□ -2.09
CD44-238ENST00000534296 C4orf36Q96KX1 117 aa1.98□□□□□ -2.09
CD44-238ENST00000534296 C12orf66Q96MD2 445 aa1.98□□□□□ -2.09
CD44-238ENST00000534296 RBM14Q96PK6 669 aaKnown RBP1.98□□□□□ -2.09
CD44-238ENST00000534296 TESK2Q96S53 571 aa1.98□□□□□ -2.09
CD44-238ENST00000534296 ZNF607Q96SK3 696 aa1.98□□□□□ -2.09
CD44-238ENST00000534296 SLC6A7Q99884 636 aa1.98□□□□□ -2.09
CD44-238ENST00000534296 EBF4Q9BQW3 602 aa1.98□□□□□ -2.09
CD44-238ENST00000534296 EDEM2Q9BV94 578 aa1.98□□□□□ -2.09
CD44-238ENST00000534296 C19orf24Q9BVV8 132 aa1.98□□□□□ -2.09
CD44-238ENST00000534296 POLR2J2Q9GZM3 115 aaKnown RBP1.98□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms