RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 ZIM2Q9NZV7 527 aa9.53□□□□□ -0.88
CD44-227ENST00000528086 SLAMF8Q9P0V8 285 aa9.53□□□□□ -0.88
CD44-227ENST00000528086 PACSIN3Q9UKS6 424 aa9.53□□□□□ -0.88
CD44-227ENST00000528086 DUXAA6NLW8 204 aa9.52□□□□□ -0.89
CD44-227ENST00000528086 AP3D1O14617 1153 aa9.52□□□□□ -0.89
CD44-227ENST00000528086 MSTNO14793 375 aa9.52□□□□□ -0.89
CD44-227ENST00000528086 EIF4E2O60573 245 aaKnown RBP9.52□□□□□ -0.89
CD44-227ENST00000528086 DIAPH2O60879 1101 aa9.52□□□□□ -0.89
CD44-227ENST00000528086 SOX30O94993 753 aa9.52□□□□□ -0.89
CD44-227ENST00000528086 AK1P00568 194 aa9.52□□□□□ -0.89
CD44-227ENST00000528086 HRGP04196 525 aa9.52□□□□□ -0.89
CD44-227ENST00000528086 NUDT7P0C024 238 aa9.52□□□□□ -0.89
CD44-227ENST00000528086 UBTFL6P0CB48 400 aaPredicted RBP9.52□□□□□ -0.89
CD44-227ENST00000528086 UBL4AP11441 157 aa9.52□□□□□ -0.89
CD44-227ENST00000528086 EPXP11678 715 aa9.52□□□□□ -0.89
CD44-227ENST00000528086 ETFAP13804 333 aa9.52□□□□□ -0.89
CD44-227ENST00000528086 IDO1P14902 403 aa9.52□□□□□ -0.89
CD44-227ENST00000528086 HPGDP15428 266 aa9.52□□□□□ -0.89
CD44-227ENST00000528086 DNAJA1P31689 397 aaKnown RBP9.52□□□□□ -0.89
CD44-227ENST00000528086 ZNF41P51814 821 aaPredicted RBP9.52□□□□□ -0.89
CD44-227ENST00000528086 SUMO3P55854 103 aaPredicted RBP9.52□□□□□ -0.89
CD44-227ENST00000528086 SESN3P58005 492 aa9.52□□□□□ -0.89
CD44-227ENST00000528086 SORDQ00796 357 aa9.52□□□□□ -0.89
CD44-227ENST00000528086 TIGD2Q4W5G0 525 aa9.52□□□□□ -0.89
CD44-227ENST00000528086 BHLHB9Q6PI77 547 aa9.52□□□□□ -0.89
CD44-227ENST00000528086 ZNF621Q6ZSS3 439 aa9.52□□□□□ -0.89
CD44-227ENST00000528086 ESPNLQ6ZVH7 1005 aa9.52□□□□□ -0.89
CD44-227ENST00000528086 CDH24Q86UP0 819 aa9.52□□□□□ -0.89
CD44-227ENST00000528086 CDC20BQ86Y33 519 aa9.52□□□□□ -0.89
CD44-227ENST00000528086 ZNF619Q8N2I2 560 aa9.52□□□□□ -0.89
CD44-227ENST00000528086 ZNF614Q8N883 585 aa9.52□□□□□ -0.89
CD44-227ENST00000528086 CNEP1R1Q8N9A8 125 aa9.52□□□□□ -0.89
CD44-227ENST00000528086 ZNF527Q8NB42 609 aa9.52□□□□□ -0.89
CD44-227ENST00000528086 GLB1L3Q8NCI6 653 aaPredicted RBP9.52□□□□□ -0.89
CD44-227ENST00000528086 RFWD2Q8NHY2 731 aa9.52□□□□□ -0.89
CD44-227ENST00000528086 ABHD3Q8WU67 409 aa9.52□□□□□ -0.89
CD44-227ENST00000528086 CKAP2Q8WWK9 683 aa9.52□□□□□ -0.89
CD44-227ENST00000528086 KLHL15Q96M94 604 aa9.52□□□□□ -0.89
CD44-227ENST00000528086 WFIKKN1Q96NZ8 548 aa9.52□□□□□ -0.89
CD44-227ENST00000528086 PANX1Q96RD7 426 aa9.52□□□□□ -0.89
CD44-227ENST00000528086 PIGMQ9H3S5 423 aa9.52□□□□□ -0.89
CD44-227ENST00000528086 ZNF385DQ9H6B1 395 aa9.52□□□□□ -0.89
CD44-227ENST00000528086 PLEKHF2Q9H8W4 249 aa9.52□□□□□ -0.89
CD44-227ENST00000528086 VIPAS39Q9H9C1 493 aa9.52□□□□□ -0.89
CD44-227ENST00000528086 DNAJB12Q9NXW2 375 aaKnown RBP9.52□□□□□ -0.89
CD44-227ENST00000528086 FOXD3Q9UJU5 478 aaPredicted RBP9.52□□□□□ -0.89
CD44-227ENST00000528086 PCDHGB4Q9UN71 923 aa9.52□□□□□ -0.89
CD44-227ENST00000528086 WDR45Q9Y484 360 aa9.52□□□□□ -0.89
CD44-227ENST00000528086 TESMINQ9Y4I5 508 aa9.52□□□□□ -0.89
CD44-227ENST00000528086 CADP27708 2225 aa9.52□□□□□ -0.89
CD44-227ENST00000528086 DSPPQ9NZW4 1301 aa9.52□□□□□ -0.89
CD44-227ENST00000528086 ACANP16112 2415 aa9.51□□□□□ -0.89
CD44-227ENST00000528086 TRBV5-3A0A0A0MS03 114 aa9.51□□□□□ -0.89
CD44-227ENST00000528086 A0A1W2PNR3 127 aa9.51□□□□□ -0.89
CD44-227ENST00000528086 TUBAL3A6NHL2 446 aa9.51□□□□□ -0.89
CD44-227ENST00000528086 AGAP5A6NIR3 686 aa9.51□□□□□ -0.89
CD44-227ENST00000528086 DEFB108AA8MXU0 73 aa9.51□□□□□ -0.89
CD44-227ENST00000528086 ZNF814B7Z6K7 855 aa9.51□□□□□ -0.89
CD44-227ENST00000528086 GTPBP1O00178 669 aaKnown RBP9.51□□□□□ -0.89
CD44-227ENST00000528086 UBDO15205 165 aa9.51□□□□□ -0.89
CD44-227ENST00000528086 SS18L1O75177 396 aaPredicted RBP9.51□□□□□ -0.89
CD44-227ENST00000528086 IL6P05231 212 aa9.51□□□□□ -0.89
CD44-227ENST00000528086 THBDP07204 575 aa9.51□□□□□ -0.89
CD44-227ENST00000528086 TFPTP0C1Z6 253 aa9.51□□□□□ -0.89
CD44-227ENST00000528086 ZCCHC18P0CG32 403 aa9.51□□□□□ -0.89
CD44-227ENST00000528086 CD8BP10966 210 aa9.51□□□□□ -0.89
CD44-227ENST00000528086 CAPN3P20807 821 aa9.51□□□□□ -0.89
CD44-227ENST00000528086 ENPP1P22413 925 aa9.51□□□□□ -0.89
CD44-227ENST00000528086 ELK4P28324 431 aa9.51□□□□□ -0.89
CD44-227ENST00000528086 ADH6P28332 368 aa9.51□□□□□ -0.89
CD44-227ENST00000528086 NTF4P34130 210 aa9.51□□□□□ -0.89
CD44-227ENST00000528086 CHI3L1P36222 383 aaPredicted RBP9.51□□□□□ -0.89
CD44-227ENST00000528086 PCYT1AP49585 367 aa9.51□□□□□ -0.89
CD44-227ENST00000528086 KHKP50053 298 aa9.51□□□□□ -0.89
CD44-227ENST00000528086 POLR2JP52435 117 aaKnown RBP9.51□□□□□ -0.89
CD44-227ENST00000528086 PPP2R2AP63151 447 aa9.51□□□□□ -0.89
CD44-227ENST00000528086 ZNF239Q16600 458 aaKnown RBP9.51□□□□□ -0.89
CD44-227ENST00000528086 GSTA3Q16772 222 aa9.51□□□□□ -0.89
CD44-227ENST00000528086 TMEM176BQ3YBM2 270 aaPredicted RBP9.51□□□□□ -0.89
CD44-227ENST00000528086 PAGE3Q5JUK9 113 aa9.51□□□□□ -0.89
CD44-227ENST00000528086 HBMQ6B0K9 141 aa9.51□□□□□ -0.89
CD44-227ENST00000528086 SLC2A7Q6PXP3 512 aa9.51□□□□□ -0.89
CD44-227ENST00000528086 PLEKHM3Q6ZWE6 761 aa9.51□□□□□ -0.89
CD44-227ENST00000528086 FAM214BQ7L5A3 538 aa9.51□□□□□ -0.89
CD44-227ENST00000528086 C16orf62Q7Z3J2 963 aa9.51□□□□□ -0.89
CD44-227ENST00000528086 NUFIP2Q7Z417 695 aaKnown RBP9.51□□□□□ -0.89
CD44-227ENST00000528086 P4HA3Q7Z4N8 544 aa9.51□□□□□ -0.89
CD44-227ENST00000528086 COMTD1Q86VU5 262 aa9.51□□□□□ -0.89
CD44-227ENST00000528086 TOR1AIP2Q8NFQ8 470 aa9.51□□□□□ -0.89
CD44-227ENST00000528086 RNF128Q8TEB7 428 aa9.51□□□□□ -0.89
CD44-227ENST00000528086 MRGPRX4Q96LA9 322 aa9.51□□□□□ -0.89
CD44-227ENST00000528086 TRNT1Q96Q11 434 aaKnown RBP9.51□□□□□ -0.89
CD44-227ENST00000528086 CCDC106Q9BWC9 280 aa9.51□□□□□ -0.89
CD44-227ENST00000528086 IKZF5Q9H5V7 419 aa9.51□□□□□ -0.89
CD44-227ENST00000528086 TPT1P8Q9HAU6 139 aa9.51□□□□□ -0.89
CD44-227ENST00000528086 POLE3Q9NRF9 147 aa9.51□□□□□ -0.89
CD44-227ENST00000528086 PLSCR4Q9NRQ2 329 aa9.51□□□□□ -0.89
CD44-227ENST00000528086 ACER3Q9NUN7 267 aa9.51□□□□□ -0.89
CD44-227ENST00000528086 PCDHB14Q9Y5E9 798 aa9.51□□□□□ -0.89
CD44-227ENST00000528086 GPC6Q9Y625 555 aaPredicted RBP9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms