RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 SPTBP11277 2137 aa8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 LRRC72A6NJI9 287 aa8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 BHLHE40O14503 412 aa8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 SLC31A1O15431 190 aa8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 SOX30O94993 753 aa8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 NFATC1O95644 943 aa8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 PPP1R3DO95685 299 aa8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 GNRH1P01148 92 aa8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 MT-ND4P03905 459 aa8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 SBK2P0C263 348 aa8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 VASPP50552 380 aaPredicted RBP8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 POU4F3Q15319 338 aa8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 VN1R4Q7Z5H5 301 aa8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 SLC44A3Q8N4M1 653 aa8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 NR4A3Q92570 626 aa8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 KISS1RQ969F8 398 aaPredicted RBP8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 BPIFA2Q96DR5 249 aa8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 ZMYND19Q96E35 227 aaPredicted RBP8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 CLDND1Q9NY35 253 aa8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 A0A0G2JK05 382 aa8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 LEUTXA8MZ59 168 aa8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 LDB3O75112 727 aa8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 CMPK1P30085 196 aa8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 SLC36A2Q495M3 483 aa8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 SFRP4Q6FHJ7 346 aaPredicted RBP8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 VITQ6UXI7 678 aa8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 RANBP3LQ86VV4 465 aaPredicted RBP8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 OR4K14Q8NGD5 310 aa8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 PIGKQ92643 395 aa8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 ZNF707Q96C28 371 aaPredicted RBP8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 PEX11GQ96HA9 241 aa8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 PIGUQ9H490 435 aa8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 ZFP64Q9NPA5 681 aa8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 BRD7Q9NPI1 651 aa8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 KCNE5Q9UJ90 142 aa8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 MDC1Q14676 2089 aaKnown RBP8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 CIB4A0PJX0 185 aa8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 EML2O95834 649 aa8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 CEACAM5P06731 702 aa8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 ATF1P18846 271 aa8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 RAB3BP20337 219 aa8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 RPE65Q16518 533 aa8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 ESCO2Q56NI9 601 aa8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 PYHIN1Q6K0P9 492 aa8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 ADGRD2Q7Z7M1 963 aa8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 CDK20Q8IZL9 346 aa8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 ZNF680Q8NEM1 530 aa8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 OR4C6Q8NH72 309 aa8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 LCN9Q8WX39 176 aa8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 SMPDL3BQ92485 455 aa8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 SCMH1Q96GD3 660 aa8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 AHCYL2Q96HN2 611 aaKnown RBP8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 C10orf90Q96M02 699 aa8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 MS4A4EQ96PG1 132 aa8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 TNFRSF13CQ96RJ3 184 aa8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 TEX101Q9BY14 249 aa8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 SLCO1C1Q9NYB5 712 aa8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 PHF11Q9UIL8 331 aa8.58□□□□□ -1.04
LIMCH1-215ENST00000512632 PRICKLE3O43900 615 aaPredicted RBP8.57□□□□□ -1.04
LIMCH1-215ENST00000512632 ANKRD34CP0C6C1 535 aa8.57□□□□□ -1.04
LIMCH1-215ENST00000512632 HK1P19367 917 aa8.57□□□□□ -1.04
LIMCH1-215ENST00000512632 AK4P27144 223 aaPredicted RBP8.57□□□□□ -1.04
LIMCH1-215ENST00000512632 NAA10P41227 235 aaPredicted RBP8.57□□□□□ -1.04
LIMCH1-215ENST00000512632 SGCGQ13326 291 aa8.57□□□□□ -1.04
LIMCH1-215ENST00000512632 RUNX2Q13950 521 aa8.57□□□□□ -1.04
LIMCH1-215ENST00000512632 ZBTB37Q5TC79 503 aa8.57□□□□□ -1.04
LIMCH1-215ENST00000512632 AGBL4Q5VU57 503 aa8.57□□□□□ -1.04
LIMCH1-215ENST00000512632 ZNF671Q8TAW3 534 aa8.57□□□□□ -1.04
LIMCH1-215ENST00000512632 YIPF5Q969M3 257 aa8.57□□□□□ -1.04
LIMCH1-215ENST00000512632 RAB7BQ96AH8 199 aa8.57□□□□□ -1.04
LIMCH1-215ENST00000512632 MED30Q96HR3 178 aa8.57□□□□□ -1.04
LIMCH1-215ENST00000512632 HDAC8Q9BY41 377 aa8.57□□□□□ -1.04
LIMCH1-215ENST00000512632 TBC1D3KA0A087X1G2 549 aa8.57□□□□□ -1.04
LIMCH1-215ENST00000512632 TBC1D3FA6NER0 549 aaPredicted RBP8.57□□□□□ -1.04
LIMCH1-215ENST00000512632 RNGTTO60942 597 aaKnown RBP8.57□□□□□ -1.04
LIMCH1-215ENST00000512632 ANXA3P12429 323 aa8.57□□□□□ -1.04
LIMCH1-215ENST00000512632 ENPP1P22413 925 aa8.57□□□□□ -1.04
LIMCH1-215ENST00000512632 MAGEB1P43366 347 aa8.57□□□□□ -1.04
LIMCH1-215ENST00000512632 ZNF81P51508 661 aa8.57□□□□□ -1.04
LIMCH1-215ENST00000512632 ZNF85Q03923 595 aa8.57□□□□□ -1.04
LIMCH1-215ENST00000512632 SNTB2Q13425 540 aaKnown RBP8.57□□□□□ -1.04
LIMCH1-215ENST00000512632 EXOSC7Q15024 291 aaKnown RBP8.57□□□□□ -1.04
LIMCH1-215ENST00000512632 CST6Q15828 149 aa8.57□□□□□ -1.04
LIMCH1-215ENST00000512632 TBC1D3GQ6DHY5 549 aa8.57□□□□□ -1.04
LIMCH1-215ENST00000512632 LUZP2Q86TE4 346 aa8.57□□□□□ -1.04
LIMCH1-215ENST00000512632 SLC38A6Q8IZM9 456 aa8.57□□□□□ -1.04
LIMCH1-215ENST00000512632 ZNF687Q8N1G0 1237 aa8.57□□□□□ -1.04
LIMCH1-215ENST00000512632 LNX2Q8N448 690 aa8.57□□□□□ -1.04
LIMCH1-215ENST00000512632 BRIX1Q8TDN6 353 aaKnown RBP8.57□□□□□ -1.04
LIMCH1-215ENST00000512632 KRCC1Q9NPI7 259 aaPredicted RBP8.57□□□□□ -1.04
LIMCH1-215ENST00000512632 ZNF223Q9UK11 482 aaPredicted RBP8.57□□□□□ -1.04
LIMCH1-215ENST00000512632 SLC22A31A6NKX4 558 aa8.57□□□□□ -1.04
LIMCH1-215ENST00000512632 PSMD9O00233 223 aa8.57□□□□□ -1.04
LIMCH1-215ENST00000512632 PLPP2O43688 288 aa8.57□□□□□ -1.04
LIMCH1-215ENST00000512632 SSNA1O43805 119 aa8.57□□□□□ -1.04
LIMCH1-215ENST00000512632 SLC22A5O76082 557 aa8.57□□□□□ -1.04
LIMCH1-215ENST00000512632 GAAP10253 952 aa8.57□□□□□ -1.04
LIMCH1-215ENST00000512632 NT5EP21589 574 aa8.57□□□□□ -1.04
LIMCH1-215ENST00000512632 RBMS1P29558 406 aaKnown RBP8.57□□□□□ -1.04
LIMCH1-215ENST00000512632 BMP8BP34820 402 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms