RNA–Protein interactions for RNA: ENST00000507004.1

HMGCS1-203, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 2

Gene HMGCS1, Length 950 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-203ENST00000507004 ZNF550Q7Z398 422 aa12.88□□□□□ -0.35
HMGCS1-203ENST00000507004 TMCO5AQ8N6Q1 288 aa12.88□□□□□ -0.35
HMGCS1-203ENST00000507004 TRIML2Q8N7C3 387 aa12.88□□□□□ -0.35
HMGCS1-203ENST00000507004 ZNF781Q8N8C0 355 aa12.88□□□□□ -0.35
HMGCS1-203ENST00000507004 ZC3HAV1LQ96H79 300 aaKnown RBP12.88□□□□□ -0.35
HMGCS1-203ENST00000507004 MARK4Q96L34 752 aa12.88□□□□□ -0.35
HMGCS1-203ENST00000507004 ACTR6Q9GZN1 396 aa12.88□□□□□ -0.35
HMGCS1-203ENST00000507004 ZNF350Q9GZX5 532 aa12.88□□□□□ -0.35
HMGCS1-203ENST00000507004 AKTIPQ9H8T0 292 aa12.88□□□□□ -0.35
HMGCS1-203ENST00000507004 CLEC4AQ9UMR7 237 aa12.88□□□□□ -0.35
HMGCS1-203ENST00000507004 ARID1AO14497 2285 aa12.88□□□□□ -0.35
HMGCS1-203ENST00000507004 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.87□□□□□ -0.35
HMGCS1-203ENST00000507004 DNAJA2O60884 412 aa12.87□□□□□ -0.35
HMGCS1-203ENST00000507004 CNOT4O95628 575 aaKnown RBP12.87□□□□□ -0.35
HMGCS1-203ENST00000507004 CSTAP01040 98 aa12.87□□□□□ -0.35
HMGCS1-203ENST00000507004 YES1P07947 543 aa12.87□□□□□ -0.35
HMGCS1-203ENST00000507004 NID1P14543 1247 aa12.87□□□□□ -0.35
HMGCS1-203ENST00000507004 ADSLP30566 484 aaPredicted RBP12.87□□□□□ -0.35
HMGCS1-203ENST00000507004 MAGEA8P43361 318 aa12.87□□□□□ -0.35
HMGCS1-203ENST00000507004 CSNK2A1P68400 391 aaPredicted RBP12.87□□□□□ -0.35
HMGCS1-203ENST00000507004 HPCAP84074 193 aa12.87□□□□□ -0.35
HMGCS1-203ENST00000507004 STX3Q13277 289 aa12.87□□□□□ -0.35
HMGCS1-203ENST00000507004 QPRTQ15274 297 aa12.87□□□□□ -0.35
HMGCS1-203ENST00000507004 DDX59Q5T1V6 619 aaKnown RBP eCLIP12.87□□□□□ -0.35
HMGCS1-203ENST00000507004 OR4F3Q6IEY1 312 aa12.87□□□□□ -0.35
HMGCS1-203ENST00000507004 HEPHL1Q6MZM0 1159 aa12.87□□□□□ -0.35
HMGCS1-203ENST00000507004 OGFOD2Q6N063 350 aa12.87□□□□□ -0.35
HMGCS1-203ENST00000507004 PLEKHM3Q6ZWE6 761 aa12.87□□□□□ -0.35
HMGCS1-203ENST00000507004 WFDC11Q8NEX6 87 aa12.87□□□□□ -0.35
HMGCS1-203ENST00000507004 OR4A15Q8NGL6 344 aa12.87□□□□□ -0.35
HMGCS1-203ENST00000507004 OR5AK3PQ8NH89 298 aa12.87□□□□□ -0.35
HMGCS1-203ENST00000507004 PMM1Q92871 262 aa12.87□□□□□ -0.35
HMGCS1-203ENST00000507004 BDH2Q9BUT1 245 aa12.87□□□□□ -0.35
HMGCS1-203ENST00000507004 UBTD1Q9HAC8 227 aa12.87□□□□□ -0.35
HMGCS1-203ENST00000507004 BCO1Q9HAY6 547 aa12.87□□□□□ -0.35
HMGCS1-203ENST00000507004 WDR91A4D1P6 747 aa12.86□□□□□ -0.35
HMGCS1-203ENST00000507004 SIAH2O43255 324 aa12.86□□□□□ -0.35
HMGCS1-203ENST00000507004 DNPH1O43598 174 aa12.86□□□□□ -0.35
HMGCS1-203ENST00000507004 FESP07332 822 aa12.86□□□□□ -0.35
HMGCS1-203ENST00000507004 INHBBP09529 407 aa12.86□□□□□ -0.35
HMGCS1-203ENST00000507004 IL32P24001 234 aa12.86□□□□□ -0.35
HMGCS1-203ENST00000507004 CLK1P49759 484 aaKnown RBP12.86□□□□□ -0.35
HMGCS1-203ENST00000507004 KHKP50053 298 aa12.86□□□□□ -0.35
HMGCS1-203ENST00000507004 CCR4P51679 360 aa12.86□□□□□ -0.35
HMGCS1-203ENST00000507004 GPR68Q15743 365 aa12.86□□□□□ -0.35
HMGCS1-203ENST00000507004 Q5PR19 223 aa12.86□□□□□ -0.35
HMGCS1-203ENST00000507004 PDZK1Q5T2W1 519 aa12.86□□□□□ -0.35
HMGCS1-203ENST00000507004 OR5D16Q8NGK9 328 aa12.86□□□□□ -0.35
HMGCS1-203ENST00000507004 ABHD3Q8WU67 409 aa12.86□□□□□ -0.35
HMGCS1-203ENST00000507004 TMEM171Q8WVE6 324 aa12.86□□□□□ -0.35
HMGCS1-203ENST00000507004 ROBO4Q8WZ75 1007 aa12.86□□□□□ -0.35
HMGCS1-203ENST00000507004 HSD17B8Q92506 261 aa12.86□□□□□ -0.35
HMGCS1-203ENST00000507004 ZHX1-C8orf76Q96EF9 292 aa12.86□□□□□ -0.35
HMGCS1-203ENST00000507004 POM121Q96HA1 1249 aa12.86□□□□□ -0.35
HMGCS1-203ENST00000507004 PKNOX2Q96KN3 472 aa12.86□□□□□ -0.35
HMGCS1-203ENST00000507004 PARD6BQ9BYG5 372 aa12.86□□□□□ -0.35
HMGCS1-203ENST00000507004 GSX2Q9BZM3 304 aa12.86□□□□□ -0.35
HMGCS1-203ENST00000507004 CXorf56Q9H5V9 222 aa12.86□□□□□ -0.35
HMGCS1-203ENST00000507004 ACER3Q9NUN7 267 aa12.86□□□□□ -0.35
HMGCS1-203ENST00000507004 BTNL2Q9UIR0 455 aa12.86□□□□□ -0.35
HMGCS1-203ENST00000507004 RAB21Q9UL25 225 aa12.86□□□□□ -0.35
HMGCS1-203ENST00000507004 LIPT1Q9Y234 373 aa12.86□□□□□ -0.35
HMGCS1-203ENST00000507004 WDR45Q9Y484 360 aa12.86□□□□□ -0.35
HMGCS1-203ENST00000507004 KCNE3Q9Y6H6 103 aa12.86□□□□□ -0.35
HMGCS1-203ENST00000507004 SETD2Q9BYW2 2564 aaPredicted RBP12.86□□□□□ -0.35
HMGCS1-203ENST00000507004 ACANP16112 2415 aa12.86□□□□□ -0.35
HMGCS1-203ENST00000507004 NPIPA5A0A0B4J1W7 369 aa12.85□□□□□ -0.35
HMGCS1-203ENST00000507004 ZNF724A8MTY0 619 aa12.85□□□□□ -0.35
HMGCS1-203ENST00000507004 E9PBE3 544 aa12.85□□□□□ -0.35
HMGCS1-203ENST00000507004 NPIPA7E9PJI5 369 aa12.85□□□□□ -0.35
HMGCS1-203ENST00000507004 SLCO1B7G3V0H7 640 aa12.85□□□□□ -0.35
HMGCS1-203ENST00000507004 KLF4O43474 513 aa12.85□□□□□ -0.35
HMGCS1-203ENST00000507004 ITM2AO43736 263 aa12.85□□□□□ -0.35
HMGCS1-203ENST00000507004 KIAA0513O60268 411 aa12.85□□□□□ -0.35
HMGCS1-203ENST00000507004 SCN2BO60939 215 aa12.85□□□□□ -0.35
HMGCS1-203ENST00000507004 OPN1LWP04000 364 aa12.85□□□□□ -0.35
HMGCS1-203ENST00000507004 NPIPA8P0DM63 369 aa12.85□□□□□ -0.35
HMGCS1-203ENST00000507004 PAX1P15863 534 aa12.85□□□□□ -0.35
HMGCS1-203ENST00000507004 ENPP1P22413 925 aa12.85□□□□□ -0.35
HMGCS1-203ENST00000507004 LOXP28300 417 aaPredicted RBP12.85□□□□□ -0.35
HMGCS1-203ENST00000507004 S100A3P33764 101 aa12.85□□□□□ -0.35
HMGCS1-203ENST00000507004 APOBEC1P41238 236 aaKnown RBP12.85□□□□□ -0.35
HMGCS1-203ENST00000507004 MAP2K6P52564 334 aa12.85□□□□□ -0.35
HMGCS1-203ENST00000507004 SKP2Q13309 424 aa12.85□□□□□ -0.35
HMGCS1-203ENST00000507004 GNA13Q14344 377 aa12.85□□□□□ -0.35
HMGCS1-203ENST00000507004 CASP8Q14790 479 aa12.85□□□□□ -0.35
HMGCS1-203ENST00000507004 PDK3Q15120 406 aa12.85□□□□□ -0.35
HMGCS1-203ENST00000507004 TIGD2Q4W5G0 525 aa12.85□□□□□ -0.35
HMGCS1-203ENST00000507004 TNFAIP8L3Q5GJ75 292 aa12.85□□□□□ -0.35
HMGCS1-203ENST00000507004 CEP85LQ5SZL2 805 aa12.85□□□□□ -0.35
HMGCS1-203ENST00000507004 SFRP5Q5T4F7 317 aa12.85□□□□□ -0.35
HMGCS1-203ENST00000507004 ANKRD34AQ69YU3 496 aa12.85□□□□□ -0.35
HMGCS1-203ENST00000507004 ADAM5Q6NVV9 412 aa12.85□□□□□ -0.35
HMGCS1-203ENST00000507004 TFAP2EQ6VUC0 442 aa12.85□□□□□ -0.35
HMGCS1-203ENST00000507004 ZNF704Q6ZNC4 412 aaPredicted RBP12.85□□□□□ -0.35
HMGCS1-203ENST00000507004 SPATA19Q7Z5L4 167 aa12.85□□□□□ -0.35
HMGCS1-203ENST00000507004 CMIPQ8IY22 773 aa12.85□□□□□ -0.35
HMGCS1-203ENST00000507004 CLECL1Q8IZS7 167 aa12.85□□□□□ -0.35
HMGCS1-203ENST00000507004 GABRG1Q8N1C3 465 aa12.85□□□□□ -0.35
HMGCS1-203ENST00000507004 ZNF619Q8N2I2 560 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms