RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 MEGF11A6BM72 1044 aa12.32□□□□□ -0.44
PTPRF-215ENST00000496447 MEN1O00255 615 aa12.32□□□□□ -0.44
PTPRF-215ENST00000496447 GALR3O60755 368 aaPredicted RBP12.32□□□□□ -0.44
PTPRF-215ENST00000496447 CRTAPO75718 401 aaPredicted RBP12.32□□□□□ -0.44
PTPRF-215ENST00000496447 LCKP06239 509 aa12.32□□□□□ -0.44
PTPRF-215ENST00000496447 DCTP40126 519 aa12.32□□□□□ -0.44
PTPRF-215ENST00000496447 ERVK-25P63136 954 aa12.32□□□□□ -0.44
PTPRF-215ENST00000496447 WBP2NLQ6ICG8 309 aa12.32□□□□□ -0.44
PTPRF-215ENST00000496447 COQ10AQ96MF6 247 aa12.32□□□□□ -0.44
PTPRF-215ENST00000496447 ACOT13Q9NPJ3 140 aa12.32□□□□□ -0.44
PTPRF-215ENST00000496447 KCNK5O95279 499 aa12.32□□□□□ -0.44
PTPRF-215ENST00000496447 TCN2P20062 427 aa12.32□□□□□ -0.44
PTPRF-215ENST00000496447 SGSHP51688 502 aa12.32□□□□□ -0.44
PTPRF-215ENST00000496447 ARL6IP1Q15041 203 aa12.32□□□□□ -0.44
PTPRF-215ENST00000496447 TP53I3Q53FA7 332 aa12.32□□□□□ -0.44
PTPRF-215ENST00000496447 R3HDMLQ9H3Y0 253 aa12.32□□□□□ -0.44
PTPRF-215ENST00000496447 MYH6P13533 1939 aa12.32□□□□□ -0.44
PTPRF-215ENST00000496447 LAMB4A4D0S4 1761 aa12.32□□□□□ -0.44
PTPRF-215ENST00000496447 RAD1O60671 282 aa12.31□□□□□ -0.44
PTPRF-215ENST00000496447 IFNA2P01563 188 aa12.31□□□□□ -0.44
PTPRF-215ENST00000496447 NAT1P18440 290 aa12.31□□□□□ -0.44
PTPRF-215ENST00000496447 BDH1Q02338 343 aa12.31□□□□□ -0.44
PTPRF-215ENST00000496447 NKAIN2Q5VXU1 208 aa12.31□□□□□ -0.44
PTPRF-215ENST00000496447 PGM2L1Q6PCE3 622 aa12.31□□□□□ -0.44
PTPRF-215ENST00000496447 SYNPOQ8N3V7 929 aa12.31□□□□□ -0.44
PTPRF-215ENST00000496447 PRR18Q8N4B5 295 aa12.31□□□□□ -0.44
PTPRF-215ENST00000496447 NDNFQ8TB73 568 aa12.31□□□□□ -0.44
PTPRF-215ENST00000496447 PRRC1Q96M27 445 aa12.31□□□□□ -0.44
PTPRF-215ENST00000496447 SLC6A18Q96N87 628 aa12.31□□□□□ -0.44
PTPRF-215ENST00000496447 PCDHGA7Q9Y5G6 932 aa12.31□□□□□ -0.44
PTPRF-215ENST00000496447 LPLP06858 475 aa12.31□□□□□ -0.44
PTPRF-215ENST00000496447 BMP1P13497 986 aa12.31□□□□□ -0.44
PTPRF-215ENST00000496447 HOXC5Q00444 222 aa12.31□□□□□ -0.44
PTPRF-215ENST00000496447 PPA1Q15181 289 aa12.31□□□□□ -0.44
PTPRF-215ENST00000496447 PKDCCQ504Y2 493 aa12.31□□□□□ -0.44
PTPRF-215ENST00000496447 CGB2Q6NT52 195 aa12.31□□□□□ -0.44
PTPRF-215ENST00000496447 ZNF300Q96RE9 604 aaPredicted RBP12.31□□□□□ -0.44
PTPRF-215ENST00000496447 ALG8Q9BVK2 526 aa12.31□□□□□ -0.44
PTPRF-215ENST00000496447 ZNF443Q9Y2A4 671 aaPredicted RBP12.31□□□□□ -0.44
PTPRF-215ENST00000496447 AKR1C4P17516 323 aa12.31□□□□□ -0.44
PTPRF-215ENST00000496447 IRS1P35568 1242 aa12.31□□□□□ -0.44
PTPRF-215ENST00000496447 RACK1P63244 317 aaKnown RBP12.31□□□□□ -0.44
PTPRF-215ENST00000496447 PIP5KL1Q5T9C9 394 aa12.31□□□□□ -0.44
PTPRF-215ENST00000496447 PARM1Q6UWI2 310 aa12.31□□□□□ -0.44
PTPRF-215ENST00000496447 DTWD1Q8N5C7 304 aa12.31□□□□□ -0.44
PTPRF-215ENST00000496447 TFAP2CQ92754 450 aa12.31□□□□□ -0.44
PTPRF-215ENST00000496447 BPIFA2Q96DR5 249 aa12.31□□□□□ -0.44
PTPRF-215ENST00000496447 MUCL1Q96DR8 90 aa12.31□□□□□ -0.44
PTPRF-215ENST00000496447 CHFRQ96EP1 664 aa12.31□□□□□ -0.44
PTPRF-215ENST00000496447 SGCZQ96LD1 299 aa12.31□□□□□ -0.44
PTPRF-215ENST00000496447 SLC6A5Q9Y345 797 aa12.31□□□□□ -0.44
PTPRF-215ENST00000496447 CSNK1G3Q9Y6M4 447 aa12.31□□□□□ -0.44
PTPRF-215ENST00000496447 WDPCPO95876 746 aa12.31□□□□□ -0.44
PTPRF-215ENST00000496447 MAGEA6P43360 314 aa12.31□□□□□ -0.44
PTPRF-215ENST00000496447 DMWDQ09019 674 aa12.31□□□□□ -0.44
PTPRF-215ENST00000496447 SSX2Q16385 188 aa12.31□□□□□ -0.44
PTPRF-215ENST00000496447 HES5Q5TA89 166 aa12.31□□□□□ -0.44
PTPRF-215ENST00000496447 ADAMTSL4Q6UY14 1074 aa12.31□□□□□ -0.44
PTPRF-215ENST00000496447 SERPINA11Q86U17 422 aa12.31□□□□□ -0.44
PTPRF-215ENST00000496447 MMP21Q8N119 569 aa12.31□□□□□ -0.44
PTPRF-215ENST00000496447 RSC1A1Q92681 617 aa12.31□□□□□ -0.44
PTPRF-215ENST00000496447 ZNF436Q9C0F3 470 aaPredicted RBP12.31□□□□□ -0.44
PTPRF-215ENST00000496447 MRPL15Q9P015 296 aaKnown RBP12.31□□□□□ -0.44
PTPRF-215ENST00000496447 MGAT4CQ9UBM8 478 aa12.31□□□□□ -0.44
PTPRF-215ENST00000496447 KIF13AQ9H1H9 1805 aa12.31□□□□□ -0.44
PTPRF-215ENST00000496447 ABLIM3O94929 683 aa12.31□□□□□ -0.44
PTPRF-215ENST00000496447 RAB3AP20336 220 aa12.31□□□□□ -0.44
PTPRF-215ENST00000496447 CTHP32929 405 aa12.31□□□□□ -0.44
PTPRF-215ENST00000496447 LSSP48449 732 aa12.31□□□□□ -0.44
PTPRF-215ENST00000496447 SSR4P51571 173 aa12.31□□□□□ -0.44
PTPRF-215ENST00000496447 OR5L1Q8NGL2 311 aa12.31□□□□□ -0.44
PTPRF-215ENST00000496447 FER1L6-AS2Q96M78 137 aa12.31□□□□□ -0.44
PTPRF-215ENST00000496447 INTS14Q96SY0 518 aa12.31□□□□□ -0.44
PTPRF-215ENST00000496447 RGCCQ9H4X1 137 aa12.31□□□□□ -0.44
PTPRF-215ENST00000496447 MEIOCA2RUB1 952 aa12.3□□□□□ -0.44
PTPRF-215ENST00000496447 TMEM221A6NGB7 291 aa12.3□□□□□ -0.44
PTPRF-215ENST00000496447 AP1G1O43747 822 aa12.3□□□□□ -0.44
PTPRF-215ENST00000496447 AIFM1O95831 613 aa12.3□□□□□ -0.44
PTPRF-215ENST00000496447 HOXA9P31269 272 aa12.3□□□□□ -0.44
PTPRF-215ENST00000496447 ADIPOR2Q86V24 386 aa12.3□□□□□ -0.44
PTPRF-215ENST00000496447 TBC1D15Q8TC07 691 aa12.3□□□□□ -0.44
PTPRF-215ENST00000496447 SLC2A12Q8TD20 617 aa12.3□□□□□ -0.44
PTPRF-215ENST00000496447 SLC6A17Q9H1V8 727 aa12.3□□□□□ -0.44
PTPRF-215ENST00000496447 KLHL9Q9P2J3 617 aa12.3□□□□□ -0.44
PTPRF-215ENST00000496447 NUDT21O43809 227 aaKnown RBP12.3□□□□□ -0.44
PTPRF-215ENST00000496447 MRPL33O75394 65 aaKnown RBP12.3□□□□□ -0.44
PTPRF-215ENST00000496447 ADRA1AP35348 466 aa12.3□□□□□ -0.44
PTPRF-215ENST00000496447 RPS5P46782 204 aaKnown RBP12.3□□□□□ -0.44
PTPRF-215ENST00000496447 FGL1Q08830 312 aa12.3□□□□□ -0.44
PTPRF-215ENST00000496447 MGAT3Q09327 533 aa12.3□□□□□ -0.44
PTPRF-215ENST00000496447 CNTN4Q8IWV2 1026 aa12.3□□□□□ -0.44
PTPRF-215ENST00000496447 CSNK2A3Q8NEV1 391 aa12.3□□□□□ -0.44
PTPRF-215ENST00000496447 OR1J4Q8NGS1 313 aa12.3□□□□□ -0.44
PTPRF-215ENST00000496447 CD300LFQ8TDQ1 290 aa12.3□□□□□ -0.44
PTPRF-215ENST00000496447 SYT3Q9BQG1 590 aa12.3□□□□□ -0.44
PTPRF-215ENST00000496447 MYEF2Q9P2K5 600 aaKnown RBP12.3□□□□□ -0.44
PTPRF-215ENST00000496447 NXT1Q9UKK6 140 aaKnown RBP12.3□□□□□ -0.44
PTPRF-215ENST00000496447 MAGEA3P43357 314 aa12.3□□□□□ -0.44
PTPRF-215ENST00000496447 SNTB2Q13425 540 aaKnown RBP12.3□□□□□ -0.44
PTPRF-215ENST00000496447 GK3PQ14409 553 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms