RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 MARVELD3Q96A59 401 aa15.51■□□□□ 0.07
VIM-205ENST00000485947 DTNBP1Q96EV8 351 aa15.51■□□□□ 0.07
VIM-205ENST00000485947 RMND5BQ96G75 393 aaPredicted RBP15.51■□□□□ 0.07
VIM-205ENST00000485947 HSH2DQ96JZ2 352 aa15.51■□□□□ 0.07
VIM-205ENST00000485947 ZNF597Q96LX8 424 aa15.51■□□□□ 0.07
VIM-205ENST00000485947 COL21A1Q96P44 957 aa15.51■□□□□ 0.07
VIM-205ENST00000485947 SEPHS2Q99611 448 aa15.51■□□□□ 0.07
VIM-205ENST00000485947 LDAHQ9H6V9 325 aa15.51■□□□□ 0.07
VIM-205ENST00000485947 ZNF703Q9H7S9 590 aaPredicted RBP15.51■□□□□ 0.07
VIM-205ENST00000485947 PROK2Q9HC23 129 aa15.51■□□□□ 0.07
VIM-205ENST00000485947 C6orf203Q9P0P8 240 aaPredicted RBP15.51■□□□□ 0.07
VIM-205ENST00000485947 ZFHX3Q15911 3703 aa15.51■□□□□ 0.07
VIM-205ENST00000485947 TRGV5A0A0B4J1U4 118 aa15.5■□□□□ 0.07
VIM-205ENST00000485947 G3V3Y1 287 aa15.5■□□□□ 0.07
VIM-205ENST00000485947 TRIM3O75382 744 aaPredicted RBP15.5■□□□□ 0.07
VIM-205ENST00000485947 PPM1BO75688 479 aa15.5■□□□□ 0.07
VIM-205ENST00000485947 OPN1SWP03999 348 aa15.5■□□□□ 0.07
VIM-205ENST00000485947 SEMG1P04279 462 aa15.5■□□□□ 0.07
VIM-205ENST00000485947 PABPC4LP0CB38 370 aaKnown RBP15.5■□□□□ 0.07
VIM-205ENST00000485947 GABRA1P14867 456 aa15.5■□□□□ 0.07
VIM-205ENST00000485947 ATP6V1C1P21283 382 aa15.5■□□□□ 0.07
VIM-205ENST00000485947 ELAVL4P26378 380 aaKnown RBP15.5■□□□□ 0.07
VIM-205ENST00000485947 ABCD3P28288 659 aa15.5■□□□□ 0.07
VIM-205ENST00000485947 DECR1Q16698 335 aa15.5■□□□□ 0.07
VIM-205ENST00000485947 GLIPR1L2Q4G1C9 344 aa15.5■□□□□ 0.07
VIM-205ENST00000485947 IFI44LQ53G44 452 aa15.5■□□□□ 0.07
VIM-205ENST00000485947 WLSQ5T9L3 541 aa15.5■□□□□ 0.07
VIM-205ENST00000485947 FKBP9P1Q75LS8 142 aa15.5■□□□□ 0.07
VIM-205ENST00000485947 PEX5LQ8IYB4 626 aa15.5■□□□□ 0.07
VIM-205ENST00000485947 PQLC1Q8N2U9 271 aa15.5■□□□□ 0.07
VIM-205ENST00000485947 FAM86B1Q8N7N1 296 aa15.5■□□□□ 0.07
VIM-205ENST00000485947 CA5BP1Q8WTZ4 195 aa15.5■□□□□ 0.07
VIM-205ENST00000485947 RND1Q92730 232 aa15.5■□□□□ 0.07
VIM-205ENST00000485947 NTNG2Q96CW9 530 aa15.5■□□□□ 0.07
VIM-205ENST00000485947 PINK1Q9BXM7 581 aa15.5■□□□□ 0.07
VIM-205ENST00000485947 NXF5Q9H1B4 397 aaKnown RBP15.5■□□□□ 0.07
VIM-205ENST00000485947 V9GYQ6 96 aa15.5■□□□□ 0.07
VIM-205ENST00000485947 SETD2Q9BYW2 2564 aaPredicted RBP15.5■□□□□ 0.07
VIM-205ENST00000485947 PCNX1Q96RV3 2341 aa15.5■□□□□ 0.07
VIM-205ENST00000485947 LRRC3CA6NJW4 275 aa15.49■□□□□ 0.07
VIM-205ENST00000485947 NPIPA2E9PIF3 369 aa15.49■□□□□ 0.07
VIM-205ENST00000485947 NPIPA3F8WFD2 350 aa15.49■□□□□ 0.07
VIM-205ENST00000485947 ABCB7O75027 752 aa15.49■□□□□ 0.07
VIM-205ENST00000485947 THBS1P07996 1170 aa15.49■□□□□ 0.07
VIM-205ENST00000485947 CD247P20963 164 aa15.49■□□□□ 0.07
VIM-205ENST00000485947 RPS4Y1P22090 263 aaKnown RBP15.49■□□□□ 0.07
VIM-205ENST00000485947 ACVR2AP27037 513 aa15.49■□□□□ 0.07
VIM-205ENST00000485947 CHRNB4P30926 498 aa15.49■□□□□ 0.07
VIM-205ENST00000485947 PRKAR1BP31321 381 aa15.49■□□□□ 0.07
VIM-205ENST00000485947 MAGEA2P43356 314 aa15.49■□□□□ 0.07
VIM-205ENST00000485947 KCNJ5P48544 419 aa15.49■□□□□ 0.07
VIM-205ENST00000485947 SLC34A1Q06495 639 aa15.49■□□□□ 0.07
VIM-205ENST00000485947 SF3B4Q15427 424 aaKnown RBP eCLIP15.49■□□□□ 0.079e-6■■□□□ 14.4
VIM-205ENST00000485947 SNCBQ16143 134 aa15.49■□□□□ 0.07
VIM-205ENST00000485947 EMC4Q5J8M3 183 aa15.49■□□□□ 0.07
VIM-205ENST00000485947 CCNJQ5T5M9 372 aa15.49■□□□□ 0.07
VIM-205ENST00000485947 PRAMEF20Q5VT98 475 aa15.49■□□□□ 0.07
VIM-205ENST00000485947 SLC30A6Q6NXT4 461 aa15.49■□□□□ 0.07
VIM-205ENST00000485947 FIGNL1Q6PIW4 674 aa15.49■□□□□ 0.07
VIM-205ENST00000485947 DHRS4L2Q6PKH6 230 aa15.49■□□□□ 0.07
VIM-205ENST00000485947 GEMIN6Q8WXD5 167 aaKnown RBP15.49■□□□□ 0.07
VIM-205ENST00000485947 TMEM41AQ96HV5 264 aa15.49■□□□□ 0.07
VIM-205ENST00000485947 TPD52L3Q96J77 140 aa15.49■□□□□ 0.07
VIM-205ENST00000485947 SPOCK3Q9BQ16 436 aa15.49■□□□□ 0.07
VIM-205ENST00000485947 CHID1Q9BWS9 393 aa15.49■□□□□ 0.07
VIM-205ENST00000485947 EVA1AQ9H8M9 152 aa15.49■□□□□ 0.07
VIM-205ENST00000485947 STOML1Q9UBI4 398 aa15.49■□□□□ 0.07
VIM-205ENST00000485947 ACAD8Q9UKU7 415 aa15.49■□□□□ 0.07
VIM-205ENST00000485947 MKLN1Q9UL63 735 aa15.49■□□□□ 0.07
VIM-205ENST00000485947 AGAP5A6NIR3 686 aa15.48■□□□□ 0.07
VIM-205ENST00000485947 TMEM229AB2RXF0 380 aa15.48■□□□□ 0.07
VIM-205ENST00000485947 SYT5O00445 386 aa15.48■□□□□ 0.07
VIM-205ENST00000485947 FCMRO60667 390 aa15.48■□□□□ 0.07
VIM-205ENST00000485947 IL33O95760 270 aa15.48■□□□□ 0.07
VIM-205ENST00000485947 BAG2O95816 211 aa15.48■□□□□ 0.07
VIM-205ENST00000485947 FABP3P05413 133 aa15.48■□□□□ 0.07
VIM-205ENST00000485947 DBIP07108 87 aaKnown RBP15.48■□□□□ 0.07
VIM-205ENST00000485947 COX6B1P14854 86 aa15.48■□□□□ 0.07
VIM-205ENST00000485947 FASP25445 335 aa15.48■□□□□ 0.07
VIM-205ENST00000485947 CASP3P42574 277 aa15.48■□□□□ 0.07
VIM-205ENST00000485947 FBXW4P57775 412 aa15.48■□□□□ 0.07
VIM-205ENST00000485947 KCNJ10P78508 379 aa15.48■□□□□ 0.07
VIM-205ENST00000485947 LARS2Q15031 903 aaKnown RBP15.48■□□□□ 0.07
VIM-205ENST00000485947 FLYWCH1Q4VC44 716 aa15.48■□□□□ 0.07
VIM-205ENST00000485947 LIN52Q52LA3 116 aa15.48■□□□□ 0.07
VIM-205ENST00000485947 ZNF311Q5JNZ3 666 aa15.48■□□□□ 0.07
VIM-205ENST00000485947 ZDHHC21Q8IVQ6 265 aa15.48■□□□□ 0.07
VIM-205ENST00000485947 OR52P1PQ8NH57 321 aa15.48■□□□□ 0.07
VIM-205ENST00000485947 LILRB4Q8NHJ6 448 aa15.48■□□□□ 0.07
VIM-205ENST00000485947 NEIL3Q8TAT5 605 aa15.48■□□□□ 0.07
VIM-205ENST00000485947 PROX1Q92786 737 aa15.48■□□□□ 0.07
VIM-205ENST00000485947 SDCCAG3Q96C92 435 aa15.48■□□□□ 0.07
VIM-205ENST00000485947 IL1RAPQ9NPH3 570 aa15.48■□□□□ 0.07
VIM-205ENST00000485947 NKX1-2Q9UD57 310 aaPredicted RBP15.48■□□□□ 0.07
VIM-205ENST00000485947 ZNF232Q9UNY5 417 aa15.48■□□□□ 0.07
VIM-205ENST00000485947 HRH3Q9Y5N1 445 aa15.48■□□□□ 0.07
VIM-205ENST00000485947 OR6C70A6NIJ9 312 aa15.47■□□□□ 0.07
VIM-205ENST00000485947 DEAF1O75398 565 aaPredicted RBP15.47■□□□□ 0.07
VIM-205ENST00000485947 TIPRLO75663 272 aa15.47■□□□□ 0.07
VIM-205ENST00000485947 HPNP05981 417 aa15.47■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms