RNA–Protein interactions for RNA: ENST00000463684.1

SMC1A-204, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 2

Gene SMC1A, Length 880 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-204ENST00000463684 B3GLCTQ6Y288 498 aa12.74□□□□□ -0.37
SMC1A-204ENST00000463684 COX18Q8N8Q8 333 aa12.74□□□□□ -0.37
SMC1A-204ENST00000463684 ZNF527Q8NB42 609 aa12.74□□□□□ -0.37
SMC1A-204ENST00000463684 ZFP28Q8NHY6 868 aa12.74□□□□□ -0.37
SMC1A-204ENST00000463684 CHMP6Q96FZ7 201 aa12.74□□□□□ -0.37
SMC1A-204ENST00000463684 MRGPRX4Q96LA9 322 aa12.74□□□□□ -0.37
SMC1A-204ENST00000463684 MS4A4EQ96PG1 132 aa12.74□□□□□ -0.37
SMC1A-204ENST00000463684 TMEM237Q96Q45 408 aa12.74□□□□□ -0.37
SMC1A-204ENST00000463684 ZNF300Q96RE9 604 aaPredicted RBP12.74□□□□□ -0.37
SMC1A-204ENST00000463684 KCNA7Q96RP8 456 aa12.74□□□□□ -0.37
SMC1A-204ENST00000463684 PRR14Q9BWN1 585 aa12.74□□□□□ -0.37
SMC1A-204ENST00000463684 FKRPQ9H9S5 495 aa12.74□□□□□ -0.37
SMC1A-204ENST00000463684 NTMQ9P121 344 aa12.74□□□□□ -0.37
SMC1A-204ENST00000463684 CARD8Q9Y2G2 431 aa12.74□□□□□ -0.37
SMC1A-204ENST00000463684 ACTL7BQ9Y614 415 aa12.74□□□□□ -0.37
SMC1A-204ENST00000463684 SLC25A15Q9Y619 301 aa12.74□□□□□ -0.37
SMC1A-204ENST00000463684 FKBP7Q9Y680 259 aa12.74□□□□□ -0.37
SMC1A-204ENST00000463684 VWC2LB2RUY7 222 aa12.73□□□□□ -0.37
SMC1A-204ENST00000463684 TRIM49D1C9J1S8 452 aa12.73□□□□□ -0.37
SMC1A-204ENST00000463684 ATP6V1C1P21283 382 aa12.73□□□□□ -0.37
SMC1A-204ENST00000463684 EDNRAP25101 427 aa12.73□□□□□ -0.37
SMC1A-204ENST00000463684 SUMO3P55854 103 aaPredicted RBP12.73□□□□□ -0.37
SMC1A-204ENST00000463684 POU6F2P78424 691 aaPredicted RBP12.73□□□□□ -0.37
SMC1A-204ENST00000463684 CARTPTQ16568 116 aa12.73□□□□□ -0.37
SMC1A-204ENST00000463684 CCNJQ5T5M9 372 aa12.73□□□□□ -0.37
SMC1A-204ENST00000463684 FBXW9Q5XUX1 488 aa12.73□□□□□ -0.37
SMC1A-204ENST00000463684 NOXRED1Q6NXP6 359 aa12.73□□□□□ -0.37
SMC1A-204ENST00000463684 ZCCHC12Q6PEW1 402 aa12.73□□□□□ -0.37
SMC1A-204ENST00000463684 CBLN3Q6UW01 205 aa12.73□□□□□ -0.37
SMC1A-204ENST00000463684 MEX3DQ86XN8 651 aaKnown RBP12.73□□□□□ -0.37
SMC1A-204ENST00000463684 SLC22A9Q8IVM8 553 aa12.73□□□□□ -0.37
SMC1A-204ENST00000463684 GPR119Q8TDV5 335 aa12.73□□□□□ -0.37
SMC1A-204ENST00000463684 JADE3Q92613 823 aa12.73□□□□□ -0.37
SMC1A-204ENST00000463684 ZNF75CPQ92670 426 aaPredicted RBP12.73□□□□□ -0.37
SMC1A-204ENST00000463684 PAFAH2Q99487 392 aa12.73□□□□□ -0.37
SMC1A-204ENST00000463684 TRMOQ9BU70 441 aa12.73□□□□□ -0.37
SMC1A-204ENST00000463684 HOXD1Q9GZZ0 328 aa12.73□□□□□ -0.37
SMC1A-204ENST00000463684 NINJ2Q9NZG7 142 aa12.73□□□□□ -0.37
SMC1A-204ENST00000463684 EMC3Q9P0I2 261 aa12.73□□□□□ -0.37
SMC1A-204ENST00000463684 ICAM5Q9UMF0 924 aa12.73□□□□□ -0.37
SMC1A-204ENST00000463684 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.72□□□□□ -0.371e-8■■■■■ 59.6
SMC1A-204ENST00000463684 ALPK2Q86TB3 2170 aa12.72□□□□□ -0.37
SMC1A-204ENST00000463684 GIMAP1-GIMAP5A0A087WTJ2 511 aa12.72□□□□□ -0.37
SMC1A-204ENST00000463684 A0A1W2PR80 420 aa12.72□□□□□ -0.37
SMC1A-204ENST00000463684 SMAD9O15198 467 aaKnown RBP12.72□□□□□ -0.37
SMC1A-204ENST00000463684 IGHV3-9P01782 118 aa12.72□□□□□ -0.37
SMC1A-204ENST00000463684 PRKCAP17252 672 aa12.72□□□□□ -0.37
SMC1A-204ENST00000463684 ATP5F1P24539 256 aaPredicted RBP12.72□□□□□ -0.37
SMC1A-204ENST00000463684 CFPP27918 469 aa12.72□□□□□ -0.37
SMC1A-204ENST00000463684 TOMM34Q15785 309 aaPredicted RBP12.72□□□□□ -0.37
SMC1A-204ENST00000463684 CR1LQ2VPA4 569 aa12.72□□□□□ -0.37
SMC1A-204ENST00000463684 OR7E24Q6IFN5 339 aa12.72□□□□□ -0.37
SMC1A-204ENST00000463684 ZNF540Q8NDQ6 660 aa12.72□□□□□ -0.37
SMC1A-204ENST00000463684 CIDECQ96AQ7 238 aaPredicted RBP12.72□□□□□ -0.37
SMC1A-204ENST00000463684 GIMAP5Q96F15 307 aa12.72□□□□□ -0.37
SMC1A-204ENST00000463684 OTUB1Q96FW1 271 aaPredicted RBP12.72□□□□□ -0.37
SMC1A-204ENST00000463684 C16orf58Q96GQ5 468 aa12.72□□□□□ -0.37
SMC1A-204ENST00000463684 EGLN2Q96KS0 407 aa12.72□□□□□ -0.37
SMC1A-204ENST00000463684 FOXN4Q96NZ1 517 aa12.72□□□□□ -0.37
SMC1A-204ENST00000463684 OR5B2Q96R09 309 aa12.72□□□□□ -0.37
SMC1A-204ENST00000463684 BTBD2Q9BX70 525 aa12.72□□□□□ -0.37
SMC1A-204ENST00000463684 C1QTNF6Q9BXI9 259 aa12.72□□□□□ -0.37
SMC1A-204ENST00000463684 MID1IP1Q9NPA3 183 aa12.72□□□□□ -0.37
SMC1A-204ENST00000463684 RRAGDQ9NQL2 400 aaPredicted RBP12.72□□□□□ -0.37
SMC1A-204ENST00000463684 ASB6Q9NWX5 421 aa12.72□□□□□ -0.37
SMC1A-204ENST00000463684 GIN1Q9NXP7 522 aa12.72□□□□□ -0.37
SMC1A-204ENST00000463684 LOC390937A0A1W2PQ73 354 aa12.71□□□□□ -0.37
SMC1A-204ENST00000463684 POC1B-GALNT4F8VUJ3 575 aa12.71□□□□□ -0.37
SMC1A-204ENST00000463684 SEC22BO75396 215 aa12.71□□□□□ -0.37
SMC1A-204ENST00000463684 ITGA2P17301 1181 aa12.71□□□□□ -0.37
SMC1A-204ENST00000463684 SRP14P37108 136 aaKnown RBP12.71□□□□□ -0.37
SMC1A-204ENST00000463684 PRKAA2P54646 552 aa12.71□□□□□ -0.37
SMC1A-204ENST00000463684 PHC1P78364 1004 aa12.71□□□□□ -0.37
SMC1A-204ENST00000463684 KLHL26Q53HC5 615 aa12.71□□□□□ -0.37
SMC1A-204ENST00000463684 ANKRD26P1Q6NSI1 321 aa12.71□□□□□ -0.37
SMC1A-204ENST00000463684 RFWD2Q8NHY2 731 aa12.71□□□□□ -0.37
SMC1A-204ENST00000463684 APH1AQ96BI3 265 aa12.71□□□□□ -0.37
SMC1A-204ENST00000463684 PPCDCQ96CD2 204 aa12.71□□□□□ -0.37
SMC1A-204ENST00000463684 C1orf159Q96HA4 380 aa12.71□□□□□ -0.37
SMC1A-204ENST00000463684 MYOZ1Q9NP98 299 aaPredicted RBP12.71□□□□□ -0.37
SMC1A-204ENST00000463684 SERINC1Q9NRX5 453 aa12.71□□□□□ -0.37
SMC1A-204ENST00000463684 TAS2R16Q9NYV7 291 aa12.71□□□□□ -0.37
SMC1A-204ENST00000463684 TMEM216Q9P0N5 145 aa12.71□□□□□ -0.37
SMC1A-204ENST00000463684 SH3BP4Q9P0V3 963 aa12.71□□□□□ -0.37
SMC1A-204ENST00000463684 ZNF180Q9UJW8 692 aa12.71□□□□□ -0.37
SMC1A-204ENST00000463684 NOSIPQ9Y314 301 aaKnown RBP12.71□□□□□ -0.37
SMC1A-204ENST00000463684 CADP27708 2225 aa12.7□□□□□ -0.38
SMC1A-204ENST00000463684 IGHV4-61A0A0C4DH41 118 aa12.7□□□□□ -0.38
SMC1A-204ENST00000463684 OIP5O43482 229 aa12.7□□□□□ -0.38
SMC1A-204ENST00000463684 CRCPO75575 148 aa12.7□□□□□ -0.38
SMC1A-204ENST00000463684 RSL1D1O76021 490 aaKnown RBP12.7□□□□□ -0.38
SMC1A-204ENST00000463684 SNRPAP09012 282 aaKnown RBP12.7□□□□□ -0.38
SMC1A-204ENST00000463684 ZNF23P17027 643 aa12.7□□□□□ -0.38
SMC1A-204ENST00000463684 RNF144AP50876 292 aaPredicted RBP12.7□□□□□ -0.38
SMC1A-204ENST00000463684 FOXA1P55317 472 aa12.7□□□□□ -0.38
SMC1A-204ENST00000463684 CSNK2A1P68400 391 aaPredicted RBP12.7□□□□□ -0.38
SMC1A-204ENST00000463684 SLC25A53Q5H9E4 307 aa12.7□□□□□ -0.38
SMC1A-204ENST00000463684 C3orf33Q6P1S2 294 aa12.7□□□□□ -0.38
SMC1A-204ENST00000463684 TRIM46Q7Z4K8 759 aa12.7□□□□□ -0.38
SMC1A-204ENST00000463684 TMCO5AQ8N6Q1 288 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms