RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 NODALQ96S42 347 aa6.57□□□□□ -1.36
USP54-208ENST00000461520 HBEGFQ99075 208 aa6.57□□□□□ -1.36
USP54-208ENST00000461520 FOXC2Q99958 501 aa6.57□□□□□ -1.36
USP54-208ENST00000461520 GPATCH1Q9BRR8 931 aaKnown RBP6.57□□□□□ -1.36
USP54-208ENST00000461520 SHCBP1LQ9BZQ2 653 aa6.57□□□□□ -1.36
USP54-208ENST00000461520 CXXC4Q9H2H0 198 aa6.57□□□□□ -1.36
USP54-208ENST00000461520 KLRF1Q9NZS2 232 aa6.57□□□□□ -1.36
USP54-208ENST00000461520 TMEM216Q9P0N5 145 aa6.57□□□□□ -1.36
USP54-208ENST00000461520 HEY2Q9UBP5 337 aa6.57□□□□□ -1.36
USP54-208ENST00000461520 NFU1Q9UMS0 254 aa6.57□□□□□ -1.36
USP54-208ENST00000461520 DLGAP4Q9Y2H0 992 aa6.57□□□□□ -1.36
USP54-208ENST00000461520 AKAP6Q13023 2319 aa6.57□□□□□ -1.36
USP54-208ENST00000461520 PRRC2AP48634 2157 aaKnown RBP6.57□□□□□ -1.36
USP54-208ENST00000461520 GNG14A0A1W2PPG7 69 aa6.56□□□□□ -1.36
USP54-208ENST00000461520 TUBAL3A6NHL2 446 aa6.56□□□□□ -1.36
USP54-208ENST00000461520 A6NNC1 897 aa6.56□□□□□ -1.36
USP54-208ENST00000461520 KDM4EB2RXH2 506 aaPredicted RBP6.56□□□□□ -1.36
USP54-208ENST00000461520 MPPED1O15442 326 aa6.56□□□□□ -1.36
USP54-208ENST00000461520 RIPK2O43353 540 aa6.56□□□□□ -1.36
USP54-208ENST00000461520 PCDH7O60245 1069 aa6.56□□□□□ -1.36
USP54-208ENST00000461520 RBMXL2O75526 392 aaKnown RBP6.56□□□□□ -1.36
USP54-208ENST00000461520 REM1O75628 298 aa6.56□□□□□ -1.36
USP54-208ENST00000461520 GOSR1O95249 250 aa6.56□□□□□ -1.36
USP54-208ENST00000461520 ENO1P06733 434 aaKnown RBP6.56□□□□□ -1.36
USP54-208ENST00000461520 GSTA1P08263 222 aa6.56□□□□□ -1.36
USP54-208ENST00000461520 IL3P08700 152 aa6.56□□□□□ -1.36
USP54-208ENST00000461520 CT45A8P0DMV1 189 aa6.56□□□□□ -1.36
USP54-208ENST00000461520 CT45A9P0DMV2 189 aa6.56□□□□□ -1.36
USP54-208ENST00000461520 CYP4B1P13584 511 aa6.56□□□□□ -1.36
USP54-208ENST00000461520 ATP5F1P24539 256 aaPredicted RBP6.56□□□□□ -1.36
USP54-208ENST00000461520 GCAP28676 217 aa6.56□□□□□ -1.36
USP54-208ENST00000461520 MPIP34949 423 aa6.56□□□□□ -1.36
USP54-208ENST00000461520 ANXA11P50995 505 aaKnown RBP6.56□□□□□ -1.36
USP54-208ENST00000461520 PNLIPRP2P54317 469 aa6.56□□□□□ -1.36
USP54-208ENST00000461520 PRKAA2P54646 552 aa6.56□□□□□ -1.36
USP54-208ENST00000461520 PKNOX1P55347 436 aa6.56□□□□□ -1.36
USP54-208ENST00000461520 WNT3P56703 355 aa6.56□□□□□ -1.36
USP54-208ENST00000461520 NAA20P61599 178 aa6.56□□□□□ -1.36
USP54-208ENST00000461520 RAE1P78406 368 aaKnown RBP6.56□□□□□ -1.36
USP54-208ENST00000461520 SORDQ00796 357 aa6.56□□□□□ -1.36
USP54-208ENST00000461520 HMGCS1Q01581 520 aa6.56□□□□□ -1.36
USP54-208ENST00000461520 LCP2Q13094 533 aa6.56□□□□□ -1.36
USP54-208ENST00000461520 HNRNPA0Q13151 305 aaKnown RBP6.56□□□□□ -1.36
USP54-208ENST00000461520 SNTB1Q13884 538 aaKnown RBP6.56□□□□□ -1.36
USP54-208ENST00000461520 EFR3AQ14156 821 aa6.56□□□□□ -1.36
USP54-208ENST00000461520 ODF1Q14990 250 aa6.56□□□□□ -1.36
USP54-208ENST00000461520 DAZAP2Q15038 168 aaPredicted RBP6.56□□□□□ -1.36
USP54-208ENST00000461520 LTB4RQ15722 352 aa6.56□□□□□ -1.36
USP54-208ENST00000461520 CT45A2Q5DJT8 189 aa6.56□□□□□ -1.36
USP54-208ENST00000461520 TCHHL1Q5QJ38 904 aaPredicted RBP6.56□□□□□ -1.36
USP54-208ENST00000461520 DCST1Q5T197 706 aa6.56□□□□□ -1.36
USP54-208ENST00000461520 FAM180BQ6P0A1 224 aa6.56□□□□□ -1.36
USP54-208ENST00000461520 ENPP6Q6UWR7 440 aa6.56□□□□□ -1.36
USP54-208ENST00000461520 GPRIN3Q6ZVF9 776 aa6.56□□□□□ -1.36
USP54-208ENST00000461520 TRMT10CQ7L0Y3 403 aaKnown RBP6.56□□□□□ -1.36
USP54-208ENST00000461520 PLCZ1Q86YW0 608 aa6.56□□□□□ -1.36
USP54-208ENST00000461520 IFT20Q8IY31 132 aa6.56□□□□□ -1.36
USP54-208ENST00000461520 WDSUB1Q8N9V3 476 aa6.56□□□□□ -1.36
USP54-208ENST00000461520 CHDHQ8NE62 594 aaPredicted RBP6.56□□□□□ -1.36
USP54-208ENST00000461520 OR14L1PQ8NHC6 308 aa6.56□□□□□ -1.36
USP54-208ENST00000461520 GOT1L1Q8NHS2 421 aaPredicted RBP6.56□□□□□ -1.36
USP54-208ENST00000461520 ACMSDQ8TDX5 336 aa6.56□□□□□ -1.36
USP54-208ENST00000461520 TMBIM1Q969X1 311 aa6.56□□□□□ -1.36
USP54-208ENST00000461520 L3HYPDHQ96EM0 354 aa6.56□□□□□ -1.36
USP54-208ENST00000461520 C11orf24Q96F05 449 aaPredicted RBP6.56□□□□□ -1.36
USP54-208ENST00000461520 RMND5BQ96G75 393 aaPredicted RBP6.56□□□□□ -1.36
USP54-208ENST00000461520 ZFP3Q96NJ6 502 aa6.56□□□□□ -1.36
USP54-208ENST00000461520 COL21A1Q96P44 957 aa6.56□□□□□ -1.36
USP54-208ENST00000461520 ACPTQ9BZG2 426 aa6.56□□□□□ -1.36
USP54-208ENST00000461520 OR2B2Q9GZK3 357 aa6.56□□□□□ -1.36
USP54-208ENST00000461520 STMN4Q9H169 189 aaPredicted RBP6.56□□□□□ -1.36
USP54-208ENST00000461520 PFDN4Q9NQP4 134 aa6.56□□□□□ -1.36
USP54-208ENST00000461520 SLC35C2Q9NQQ7 365 aa6.56□□□□□ -1.36
USP54-208ENST00000461520 GIMAP4Q9NUV9 329 aa6.56□□□□□ -1.36
USP54-208ENST00000461520 TAS2R9Q9NYW1 312 aa6.56□□□□□ -1.36
USP54-208ENST00000461520 EHD3Q9NZN3 535 aa6.56□□□□□ -1.36
USP54-208ENST00000461520 MRPS18CQ9Y3D5 142 aaKnown RBP6.56□□□□□ -1.36
USP54-208ENST00000461520 WIF1Q9Y5W5 379 aa6.56□□□□□ -1.36
USP54-208ENST00000461520 NCKAP5O14513 1909 aa6.56□□□□□ -1.36
USP54-208ENST00000461520 FLNAP21333 2647 aaKnown RBP6.56□□□□□ -1.36
USP54-208ENST00000461520 DNAJC13O75165 2243 aa6.56□□□□□ -1.36
USP54-208ENST00000461520 ABCA4P78363 2273 aa6.55□□□□□ -1.36
USP54-208ENST00000461520 EEF1E1-BLOC1S5C9J1V9 151 aa6.55□□□□□ -1.36
USP54-208ENST00000461520 H0Y3Z8 333 aa6.55□□□□□ -1.36
USP54-208ENST00000461520 H3BQF6 201 aa6.55□□□□□ -1.36
USP54-208ENST00000461520 KIF2AO00139 706 aaPredicted RBP6.55□□□□□ -1.36
USP54-208ENST00000461520 EEF1E1O43324 174 aaKnown RBP6.55□□□□□ -1.36
USP54-208ENST00000461520 PLOD3O60568 738 aa6.55□□□□□ -1.36
USP54-208ENST00000461520 TSPAN2O60636 221 aa6.55□□□□□ -1.36
USP54-208ENST00000461520 COQ9O75208 318 aa6.55□□□□□ -1.36
USP54-208ENST00000461520 RCBTB2O95199 551 aa6.55□□□□□ -1.36
USP54-208ENST00000461520 CHRM2P08172 466 aa6.55□□□□□ -1.36
USP54-208ENST00000461520 TMIGD3P0DMS9 266 aaPredicted RBP6.55□□□□□ -1.36
USP54-208ENST00000461520 CHN1P15882 459 aa6.55□□□□□ -1.36
USP54-208ENST00000461520 CHMP24386 653 aa6.55□□□□□ -1.36
USP54-208ENST00000461520 IL12BP29460 328 aa6.55□□□□□ -1.36
USP54-208ENST00000461520 SRD5A2P31213 254 aa6.55□□□□□ -1.36
USP54-208ENST00000461520 TIA1P31483 386 aaKnown RBP eCLIP6.55□□□□□ -1.36
USP54-208ENST00000461520 KRT20P35900 424 aa6.55□□□□□ -1.36
USP54-208ENST00000461520 HTR6P50406 440 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms