RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 ALDOAP04075 364 aaKnown RBP4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 RLN2P04090 185 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 F7P08709 466 aaPredicted RBP4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 SPARCP09486 303 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 C8orf89P0DMQ9 161 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 KCNE1P15382 129 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 PAX1P15863 534 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 PROZP22891 400 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 DDTP30046 118 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 HPCAL1P37235 193 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 VIPR2P41587 438 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 ZNF134P52741 427 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 EPHB3P54753 998 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 CDH8P55286 799 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 RPS7P62081 194 aaKnown RBP4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 LSM6P62312 80 aaKnown RBP4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 EIF4HQ15056 248 aaKnown RBP4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 VPS26BQ4G0F5 336 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 ATAD3CQ5T2N8 411 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 PRAMEF8Q5VWM4 474 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 ZNF787Q6DD87 383 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 DGAT2L7PQ6IED9 249 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 OR8G2PQ6IF36 304 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 PPP1R32Q7Z5V6 425 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 ZC3H3Q8IXZ2 948 aaKnown RBP4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 C9orf62Q8N4C0 152 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 C12orf45Q8N5I9 185 aaPredicted RBP4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 PQLC3Q8N755 202 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 EMC1Q8N766 993 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 NECAB1Q8N987 351 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 FADS6Q8N9I5 356 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 CCDC71LQ8N9Z2 235 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 OR51L1Q8NGJ5 315 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 NFKBIDQ8NI38 313 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 HM13Q8TCT9 377 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 TFAP2BQ92481 460 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 BADQ92934 168 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 PABPC5Q96DU9 382 aaKnown RBP4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 OTUB1Q96FW1 271 aaPredicted RBP4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 TECTBQ96PL2 329 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 ZNF347Q96SE7 839 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 GAD1Q99259 594 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 PIGQQ9BRB3 760 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 NICN1Q9BSH3 213 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 FUZQ9BT04 418 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 TRMT61BQ9BVS5 477 aaKnown RBP4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 ELOVL1Q9BW60 279 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 SLC46A2Q9BY10 475 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 SRRQ9GZT4 340 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 ACTR8Q9H981 624 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 TMBIM4Q9HC24 238 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 SLC22A11Q9NSA0 550 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 TMEM216Q9P0N5 145 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 GHRLQ9UBU3 117 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 MRM2Q9UI43 246 aaKnown RBP4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 PURGQ9UJV8 347 aaKnown RBP4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 OR52A1Q9UKL2 312 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 SLC22A13Q9Y226 551 aa4.45□□□□□ -1.7
CCDC88A-209ENST00000456975 MYH4Q9Y623 1939 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 NCOR1O75376 2440 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 PARP14Q460N5 1801 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 TRBV7-9A0A0J9YWB2 115 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 AGAP5A6NIR3 686 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 MPTX1A8MV57 137 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 HEPACAM2A8MVW5 462 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 C1QTNF9BB2RNN3 333 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 DNASE2O00115 360 aaPredicted RBP4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 CXCR6O00574 342 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 TRAFD1O14545 582 aaPredicted RBP4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 ADAM10O14672 748 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 CLIC2O15247 247 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 SIVA1O15304 175 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 TEX33O43247 280 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 FZD7O75084 574 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 STC2O76061 302 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 DFFBO76075 338 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 AP2A1O95782 977 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 LATS1O95835 1130 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 KNG1P01042 644 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 TGFB1P01137 390 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 GBAP04062 536 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 TCRBP04435 133 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 CTPS1P17812 591 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 ADRA2CP18825 462 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 ANXA7P20073 488 aaKnown RBP4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 TGM2P21980 687 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 DPP4P27487 766 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 RPS19P39019 145 aaKnown RBP4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 DDOSTP39656 456 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 MMP13P45452 471 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 FAM3BP58499 235 aaPredicted RBP4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 PCOLCEQ15113 449 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 EXT1Q16394 746 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 MICBQ29980 383 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 LIPMQ5VYY2 423 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 REP15Q6BDI9 236 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 INO80CQ6PI98 192 aaPredicted RBP4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 DLEU7Q6UYE1 221 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 ASCL4Q6XD76 172 aa4.44□□□□□ -1.7
CCDC88A-209ENST00000456975 RBMS3Q6XE24 437 aaKnown RBP4.44□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms