RNA–Protein interactions for RNA: ENST00000452047.1

CPSF4-208, Transcript of cleavage and polyadenylation specific factor 4, human

TSL 3

Gene CPSF4, Length 687 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF4-208	ENST00000452047	PDSS1	Q5T2R2	415 aa		11.14	□□□□□ -0.63
CPSF4-208	ENST00000452047	ANXA8L1	Q5VT79	327 aa		11.14	□□□□□ -0.63
CPSF4-208	ENST00000452047	AP1AR	Q63HQ0	302 aa		11.14	□□□□□ -0.63
CPSF4-208	ENST00000452047	SAXO2	Q658L1	398 aa		11.14	□□□□□ -0.63
CPSF4-208	ENST00000452047	STAC2	Q6ZMT1	411 aa		11.14	□□□□□ -0.63
CPSF4-208	ENST00000452047	TMCO5A	Q8N6Q1	288 aa		11.14	□□□□□ -0.63
CPSF4-208	ENST00000452047	ANKRD42	Q8N9B4	389 aa		11.14	□□□□□ -0.63
CPSF4-208	ENST00000452047	FAM71C	Q8NEG0	241 aa		11.14	□□□□□ -0.63
CPSF4-208	ENST00000452047	TOR1AIP2	Q8NFQ8	470 aa		11.14	□□□□□ -0.63
CPSF4-208	ENST00000452047	ABHD3	Q8WU67	409 aa		11.14	□□□□□ -0.63
CPSF4-208	ENST00000452047	CPNE4	Q96A23	557 aa	Predicted RBP	11.14	□□□□□ -0.63
CPSF4-208	ENST00000452047	NEURL3	Q96EH8	262 aa		11.14	□□□□□ -0.63
CPSF4-208	ENST00000452047	PAIP2	Q9BPZ3	127 aa	Known RBP	11.14	□□□□□ -0.63
CPSF4-208	ENST00000452047	OR51I1	Q9H343	314 aa		11.14	□□□□□ -0.63
CPSF4-208	ENST00000452047	AIG1	Q9NVV5	245 aa		11.14	□□□□□ -0.63
CPSF4-208	ENST00000452047	MKLN1	Q9UL63	735 aa		11.14	□□□□□ -0.63
CPSF4-208	ENST00000452047	PCDHGB4	Q9UN71	923 aa		11.14	□□□□□ -0.63
CPSF4-208	ENST00000452047	FREM1	Q5H8C1	2179 aa		11.14	□□□□□ -0.63
CPSF4-208	ENST00000452047	GJE1	A6NN92	205 aa		11.13	□□□□□ -0.63
CPSF4-208	ENST00000452047	RRP9	O43818	475 aa	Known RBP	11.13	□□□□□ -0.63
CPSF4-208	ENST00000452047	SNN	O75324	88 aa	Predicted RBP	11.13	□□□□□ -0.63
CPSF4-208	ENST00000452047	C1QC	P02747	245 aa		11.13	□□□□□ -0.63
CPSF4-208	ENST00000452047	THBD	P07204	575 aa		11.13	□□□□□ -0.63
CPSF4-208	ENST00000452047	OR12D1	P0DN82	309 aa		11.13	□□□□□ -0.63
CPSF4-208	ENST00000452047	CD99	P14209	185 aa		11.13	□□□□□ -0.63
CPSF4-208	ENST00000452047	UFM1	P61960	85 aa		11.13	□□□□□ -0.63
CPSF4-208	ENST00000452047	ADAM8	P78325	824 aa		11.13	□□□□□ -0.63
CPSF4-208	ENST00000452047	FOXD4	Q12950	439 aa	Predicted RBP	11.13	□□□□□ -0.63
CPSF4-208	ENST00000452047	SELENBP1	Q13228	472 aa		11.13	□□□□□ -0.63
CPSF4-208	ENST00000452047	CBFB	Q13951	182 aa		11.13	□□□□□ -0.63
CPSF4-208	ENST00000452047	QPRT	Q15274	297 aa		11.13	□□□□□ -0.63
CPSF4-208	ENST00000452047	MAPK14	Q16539	360 aa		11.13	□□□□□ -0.63
CPSF4-208	ENST00000452047	EXOC3L2	Q2M3D2	409 aa		11.13	□□□□□ -0.63
CPSF4-208	ENST00000452047	HHAT	Q5VTY9	493 aa		11.13	□□□□□ -0.63
CPSF4-208	ENST00000452047	TYW3	Q6IPR3	259 aa	Known RBP	11.13	□□□□□ -0.63
CPSF4-208	ENST00000452047	TNFAIP8L2	Q6P589	184 aa	Predicted RBP	11.13	□□□□□ -0.63
CPSF4-208	ENST00000452047	C16orf62	Q7Z3J2	963 aa		11.13	□□□□□ -0.63
CPSF4-208	ENST00000452047	KRTAP1-3	Q8IUG1	177 aa		11.13	□□□□□ -0.63
CPSF4-208	ENST00000452047	VPS37A	Q8NEZ2	397 aa		11.13	□□□□□ -0.63
CPSF4-208	ENST00000452047	ZFP90	Q8TF47	636 aa		11.13	□□□□□ -0.63
CPSF4-208	ENST00000452047	OIT3	Q8WWZ8	545 aa		11.13	□□□□□ -0.63
CPSF4-208	ENST00000452047	ROBO4	Q8WZ75	1007 aa		11.13	□□□□□ -0.63
CPSF4-208	ENST00000452047	RAB8B	Q92930	207 aa		11.13	□□□□□ -0.63
CPSF4-208	ENST00000452047	CCDC115	Q96NT0	180 aa		11.13	□□□□□ -0.63
CPSF4-208	ENST00000452047	HS3ST6	Q96QI5	342 aa		11.13	□□□□□ -0.63
CPSF4-208	ENST00000452047	KLHL4	Q9C0H6	718 aa		11.13	□□□□□ -0.63
CPSF4-208	ENST00000452047	LAT2	Q9GZY6	243 aa		11.13	□□□□□ -0.63
CPSF4-208	ENST00000452047	DLL4	Q9NR61	685 aa		11.13	□□□□□ -0.63
CPSF4-208	ENST00000452047	EXD2	Q9NVH0	621 aa		11.13	□□□□□ -0.63
CPSF4-208	ENST00000452047	PRR14L	Q5THK1	2151 aa		11.13	□□□□□ -0.63
CPSF4-208	ENST00000452047	ROS1	P08922	2347 aa		11.12	□□□□□ -0.63
CPSF4-208	ENST00000452047	PRAMEF27	A3QJZ7	478 aa		11.12	□□□□□ -0.63
CPSF4-208	ENST00000452047		C9JVG2	144 aa		11.12	□□□□□ -0.63
CPSF4-208	ENST00000452047	HDAC3	O15379	428 aa		11.12	□□□□□ -0.63
CPSF4-208	ENST00000452047	BCAS1	O75363	584 aa	Predicted RBP	11.12	□□□□□ -0.63
CPSF4-208	ENST00000452047	CPSF4	O95639	269 aa	Known RBP	11.12	□□□□□ -0.63
CPSF4-208	ENST00000452047	AGR2	O95994	175 aa		11.12	□□□□□ -0.63
CPSF4-208	ENST00000452047	CSTA	P01040	98 aa		11.12	□□□□□ -0.63
CPSF4-208	ENST00000452047	PABPC4L	P0CB38	370 aa	Known RBP	11.12	□□□□□ -0.63
CPSF4-208	ENST00000452047	EPHA3	P29320	983 aa		11.12	□□□□□ -0.63
CPSF4-208	ENST00000452047	IL12A	P29459	219 aa		11.12	□□□□□ -0.63
CPSF4-208	ENST00000452047	HOXC12	P31275	282 aa		11.12	□□□□□ -0.63
CPSF4-208	ENST00000452047	S100A3	P33764	101 aa		11.12	□□□□□ -0.63
CPSF4-208	ENST00000452047	PGM1	P36871	562 aa		11.12	□□□□□ -0.63
CPSF4-208	ENST00000452047	CCR4	P51679	360 aa		11.12	□□□□□ -0.63
CPSF4-208	ENST00000452047	SLC18A1	P54219	525 aa		11.12	□□□□□ -0.63
CPSF4-208	ENST00000452047	PLAUR	Q03405	335 aa		11.12	□□□□□ -0.63
CPSF4-208	ENST00000452047	RNPS1	Q15287	305 aa	Known RBP	11.12	□□□□□ -0.63
CPSF4-208	ENST00000452047	TMEM176B	Q3YBM2	270 aa	Predicted RBP	11.12	□□□□□ -0.63
CPSF4-208	ENST00000452047	ATAD3B	Q5T9A4	648 aa		11.12	□□□□□ -0.63
CPSF4-208	ENST00000452047	ANKRD34A	Q69YU3	496 aa		11.12	□□□□□ -0.63
CPSF4-208	ENST00000452047	GTF2IRD2B	Q6EKJ0	949 aa		11.12	□□□□□ -0.63
CPSF4-208	ENST00000452047	FRRS1	Q6ZNA5	592 aa		11.12	□□□□□ -0.63
CPSF4-208	ENST00000452047	GTF2IRD2	Q86UP8	949 aa		11.12	□□□□□ -0.63
CPSF4-208	ENST00000452047	CXorf67	Q86X51	503 aa	Predicted RBP	11.12	□□□□□ -0.63
CPSF4-208	ENST00000452047	RFWD2	Q8NHY2	731 aa		11.12	□□□□□ -0.63
CPSF4-208	ENST00000452047	XAGE5	Q8WWM1	108 aa		11.12	□□□□□ -0.63
CPSF4-208	ENST00000452047	ST8SIA1	Q92185	356 aa		11.12	□□□□□ -0.63
CPSF4-208	ENST00000452047	PIK3IP1	Q96FE7	263 aa		11.12	□□□□□ -0.63
CPSF4-208	ENST00000452047	ZC3HAV1L	Q96H79	300 aa	Known RBP	11.12	□□□□□ -0.63
CPSF4-208	ENST00000452047	SLC35A5	Q9BS91	424 aa		11.12	□□□□□ -0.63
CPSF4-208	ENST00000452047	THUMPD3	Q9BV44	507 aa	Known RBP	11.12	□□□□□ -0.63
CPSF4-208	ENST00000452047	SAP130	Q9H0E3	1048 aa		11.12	□□□□□ -0.63
CPSF4-208	ENST00000452047	WDR55	Q9H6Y2	383 aa	Predicted RBP	11.12	□□□□□ -0.63
CPSF4-208	ENST00000452047	C12orf49	Q9H741	205 aa		11.12	□□□□□ -0.63
CPSF4-208	ENST00000452047	GP6	Q9HCN6	339 aa		11.12	□□□□□ -0.63
CPSF4-208	ENST00000452047	TIGAR	Q9NQ88	270 aa		11.12	□□□□□ -0.63
CPSF4-208	ENST00000452047	POLE3	Q9NRF9	147 aa		11.12	□□□□□ -0.63
CPSF4-208	ENST00000452047	THAP1	Q9NVV9	213 aa		11.12	□□□□□ -0.63
CPSF4-208	ENST00000452047	BEX4	Q9NWD9	120 aa	Predicted RBP	11.12	□□□□□ -0.63
CPSF4-208	ENST00000452047	KLHL13	Q9P2N7	655 aa		11.12	□□□□□ -0.63
CPSF4-208	ENST00000452047	MARCO	Q9UEW3	520 aa	Predicted RBP	11.12	□□□□□ -0.63
CPSF4-208	ENST00000452047	BTNL2	Q9UIR0	455 aa		11.12	□□□□□ -0.63
CPSF4-208	ENST00000452047	WDR45	Q9Y484	360 aa		11.12	□□□□□ -0.63
CPSF4-208	ENST00000452047	GPR45	Q9Y5Y3	372 aa		11.12	□□□□□ -0.63
CPSF4-208	ENST00000452047	UQCRHL	A0A096LP55	91 aa		11.11	□□□□□ -0.63
CPSF4-208	ENST00000452047	HMGN4	O00479	90 aa		11.11	□□□□□ -0.63
CPSF4-208	ENST00000452047	KLF4	O43474	513 aa		11.11	□□□□□ -0.63
CPSF4-208	ENST00000452047	H6PD	O95479	791 aa		11.11	□□□□□ -0.63
CPSF4-208	ENST00000452047	PGR	P06401	933 aa		11.11	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms