RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 ALOX5P09917 674 aa3.58□□□□□ -1.84
HMGB3-203ENST00000430118 FRMD6-AS1P0C7T7 363 aa3.58□□□□□ -1.84
HMGB3-203ENST00000430118 ZNF3P17036 446 aa3.58□□□□□ -1.84
HMGB3-203ENST00000430118 GLRA2P23416 452 aa3.58□□□□□ -1.84
HMGB3-203ENST00000430118 ACKR3P25106 362 aa3.58□□□□□ -1.84
HMGB3-203ENST00000430118 OXTRP30559 389 aa3.58□□□□□ -1.84
HMGB3-203ENST00000430118 GTF2H1P32780 548 aa3.58□□□□□ -1.84
HMGB3-203ENST00000430118 IFNA8P32881 189 aa3.58□□□□□ -1.84
HMGB3-203ENST00000430118 ARL2P36404 184 aa3.58□□□□□ -1.84
HMGB3-203ENST00000430118 NAMPTP43490 491 aa3.58□□□□□ -1.84
HMGB3-203ENST00000430118 SLC6A8P48029 635 aa3.58□□□□□ -1.84
HMGB3-203ENST00000430118 HSPA13P48723 471 aa3.58□□□□□ -1.84
HMGB3-203ENST00000430118 CCL11P51671 97 aa3.58□□□□□ -1.84
HMGB3-203ENST00000430118 NOP14P78316 857 aaKnown RBP3.58□□□□□ -1.84
HMGB3-203ENST00000430118 XIAPP98170 497 aa3.58□□□□□ -1.84
HMGB3-203ENST00000430118 GUCY2DQ02846 1103 aa3.58□□□□□ -1.84
HMGB3-203ENST00000430118 ILF3Q12906 894 aaKnown RBP eCLIP3.58□□□□□ -1.84
HMGB3-203ENST00000430118 KEAP1Q14145 624 aa3.58□□□□□ -1.84
HMGB3-203ENST00000430118 LY6DQ14210 128 aa3.58□□□□□ -1.84
HMGB3-203ENST00000430118 RBM39Q14498 530 aaKnown RBP3.58□□□□□ -1.84
HMGB3-203ENST00000430118 CEBPEQ15744 281 aa3.58□□□□□ -1.84
HMGB3-203ENST00000430118 ZNF77Q15935 545 aa3.58□□□□□ -1.84
HMGB3-203ENST00000430118 CARTPTQ16568 116 aa3.58□□□□□ -1.84
HMGB3-203ENST00000430118 KYAT1Q16773 422 aa3.58□□□□□ -1.84
HMGB3-203ENST00000430118 CCDC142Q17RM4 750 aa3.58□□□□□ -1.84
HMGB3-203ENST00000430118 HLA-BQ31612 363 aa3.58□□□□□ -1.84
HMGB3-203ENST00000430118 C6orf183Q5T699 404 aa3.58□□□□□ -1.84
HMGB3-203ENST00000430118 HES3Q5TGS1 186 aa3.58□□□□□ -1.84
HMGB3-203ENST00000430118 NADSYN1Q6IA69 706 aa3.58□□□□□ -1.84
HMGB3-203ENST00000430118 CENPPQ6IPU0 288 aa3.58□□□□□ -1.84
HMGB3-203ENST00000430118 LRRC8BQ6P9F7 803 aa3.58□□□□□ -1.84
HMGB3-203ENST00000430118 CEACAM20Q6UY09 585 aa3.58□□□□□ -1.84
HMGB3-203ENST00000430118 CROCCP2Q86T23 111 aa3.58□□□□□ -1.84
HMGB3-203ENST00000430118 PIGZQ86VD9 579 aa3.58□□□□□ -1.84
HMGB3-203ENST00000430118 AMZ2Q86W34 360 aa3.58□□□□□ -1.84
HMGB3-203ENST00000430118 NKAIN4Q8IVV8 208 aa3.58□□□□□ -1.84
HMGB3-203ENST00000430118 NELFCDQ8IXH7 590 aa3.58□□□□□ -1.84
HMGB3-203ENST00000430118 IQCKQ8N0W5 287 aa3.58□□□□□ -1.84
HMGB3-203ENST00000430118 TEX26Q8N6G2 289 aa3.58□□□□□ -1.84
HMGB3-203ENST00000430118 ZNF383Q8NA42 475 aa3.58□□□□□ -1.84
HMGB3-203ENST00000430118 IPMKQ8NFU5 416 aa3.58□□□□□ -1.84
HMGB3-203ENST00000430118 OR1L3Q8NH93 324 aa3.58□□□□□ -1.84
HMGB3-203ENST00000430118 ENKURQ8TC29 256 aa3.58□□□□□ -1.84
HMGB3-203ENST00000430118 FCAMRQ8WWV6 532 aa3.58□□□□□ -1.84
HMGB3-203ENST00000430118 NEUROG1Q92886 237 aa3.58□□□□□ -1.84
HMGB3-203ENST00000430118 CCDC127Q96BQ5 260 aa3.58□□□□□ -1.84
HMGB3-203ENST00000430118 ZNF479Q96JC4 524 aa3.58□□□□□ -1.84
HMGB3-203ENST00000430118 ZNF778Q96MU6 729 aa3.58□□□□□ -1.84
HMGB3-203ENST00000430118 PCDHB18PQ96TA0 734 aa3.58□□□□□ -1.84
HMGB3-203ENST00000430118 IL12RB2Q99665 862 aa3.58□□□□□ -1.84
HMGB3-203ENST00000430118 PSD2Q9BQI7 771 aa3.58□□□□□ -1.84
HMGB3-203ENST00000430118 PIGQQ9BRB3 760 aa3.58□□□□□ -1.84
HMGB3-203ENST00000430118 CBWD1Q9BRT8 395 aa3.58□□□□□ -1.84
HMGB3-203ENST00000430118 WRAP53Q9BUR4 548 aaKnown RBP3.58□□□□□ -1.84
HMGB3-203ENST00000430118 TDRD1Q9BXT4 1180 aaKnown RBP3.58□□□□□ -1.84
HMGB3-203ENST00000430118 THAP2Q9H0W7 228 aa3.58□□□□□ -1.84
HMGB3-203ENST00000430118 DPEP3Q9H4B8 488 aa3.58□□□□□ -1.84
HMGB3-203ENST00000430118 EGLN3Q9H6Z9 239 aa3.58□□□□□ -1.84
HMGB3-203ENST00000430118 COQ10BQ9H8M1 238 aa3.58□□□□□ -1.84
HMGB3-203ENST00000430118 COG4Q9H9E3 785 aa3.58□□□□□ -1.84
HMGB3-203ENST00000430118 UCK1Q9HA47 277 aa3.58□□□□□ -1.84
HMGB3-203ENST00000430118 TMBIM4Q9HC24 238 aa3.58□□□□□ -1.84
HMGB3-203ENST00000430118 FANCFQ9NPI8 374 aa3.58□□□□□ -1.84
HMGB3-203ENST00000430118 FARSBQ9NSD9 589 aaKnown RBP3.58□□□□□ -1.84
HMGB3-203ENST00000430118 IFNKQ9P0W0 207 aa3.58□□□□□ -1.84
HMGB3-203ENST00000430118 VPS54Q9P1Q0 977 aa3.58□□□□□ -1.84
HMGB3-203ENST00000430118 DNAJC12Q9UKB3 198 aa3.58□□□□□ -1.84
HMGB3-203ENST00000430118 UBQLN1Q9UMX0 589 aaKnown RBP3.58□□□□□ -1.84
HMGB3-203ENST00000430118 MGAT4BQ9UQ53 548 aa3.58□□□□□ -1.84
HMGB3-203ENST00000430118 ENTPD4Q9Y227 616 aa3.58□□□□□ -1.84
HMGB3-203ENST00000430118 ETV7Q9Y603 341 aa3.58□□□□□ -1.84
HMGB3-203ENST00000430118 COL5A1P20908 1838 aaPredicted RBP3.58□□□□□ -1.84
HMGB3-203ENST00000430118 KIAA1549LQ6ZVL6 1849 aa3.58□□□□□ -1.84
HMGB3-203ENST00000430118 PLXND1Q9Y4D7 1925 aa3.58□□□□□ -1.84
HMGB3-203ENST00000430118 APC2O95996 2303 aa3.58□□□□□ -1.84
HMGB3-203ENST00000430118 MYO9AB2RTY4 2548 aa3.58□□□□□ -1.84
HMGB3-203ENST00000430118 RELNP78509 3460 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 KLF18A0A0U1RQI7 1052 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 C1orf232A0A0U1RR37 186 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 A0A0U1RRA0 63 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 FAM230AA0A1W2PPH8 454 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 PLSCR5A0PG75 271 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 LACTBL1A8MY62 500 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 PRAC2D3DTV9 90 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 H3BQV1 296 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 K7EQS6 105 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 SGK1O00141 431 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 TRAFD1O14545 582 aaPredicted RBP3.57□□□□□ -1.84
HMGB3-203ENST00000430118 CYTIPO60759 359 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 TSC22D2O75157 780 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 SCGB2A1O75556 95 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 MFN2O95140 757 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 LYPLA2O95372 231 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 SYNGR4O95473 234 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 TDP2O95551 362 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 KRT75O95678 551 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 LDOC1O95751 146 aaPredicted RBP3.57□□□□□ -1.84
HMGB3-203ENST00000430118 OAS1P00973 400 aaKnown RBP3.57□□□□□ -1.84
HMGB3-203ENST00000430118 HLA-DRAP01903 254 aa3.57□□□□□ -1.84
HMGB3-203ENST00000430118 MT-ND2P03891 347 aa3.57□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms