RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 EDAQ92838 391 aa9.17□□□□□ -0.94
USP54-205ENST00000424265 SPSB2Q99619 263 aa9.17□□□□□ -0.94
USP54-205ENST00000424265 VPS25Q9BRG1 176 aa9.17□□□□□ -0.94
USP54-205ENST00000424265 SEMA4CQ9C0C4 833 aa9.17□□□□□ -0.94
USP54-205ENST00000424265 SEC14L3Q9UDX4 400 aa9.17□□□□□ -0.94
USP54-205ENST00000424265 NUBP2Q9Y5Y2 271 aa9.17□□□□□ -0.94
USP54-205ENST00000424265 TRBV5-4A0A0C4DH59 114 aa9.17□□□□□ -0.94
USP54-205ENST00000424265 MCIDASD6RGH6 385 aa9.17□□□□□ -0.94
USP54-205ENST00000424265 NME1P15531 152 aaKnown RBP9.17□□□□□ -0.94
USP54-205ENST00000424265 ITGA3P26006 1051 aa9.17□□□□□ -0.94
USP54-205ENST00000424265 BMI1P35226 326 aa9.17□□□□□ -0.94
USP54-205ENST00000424265 CDH11P55287 796 aa9.17□□□□□ -0.94
USP54-205ENST00000424265 MEF2AQ02078 507 aaPredicted RBP9.17□□□□□ -0.94
USP54-205ENST00000424265 KEAP1Q14145 624 aa9.17□□□□□ -0.94
USP54-205ENST00000424265 RABL3Q5HYI8 236 aa9.17□□□□□ -0.94
USP54-205ENST00000424265 HSDL2Q6YN16 418 aa9.17□□□□□ -0.94
USP54-205ENST00000424265 TECPR1Q7Z6L1 1165 aa9.17□□□□□ -0.94
USP54-205ENST00000424265 OR2T11Q8NH01 316 aa9.17□□□□□ -0.94
USP54-205ENST00000424265 C14orf79Q96F83 325 aa9.17□□□□□ -0.94
USP54-205ENST00000424265 SCMH1Q96GD3 660 aa9.17□□□□□ -0.94
USP54-205ENST00000424265 ZNF845Q96IR2 970 aaPredicted RBP9.17□□□□□ -0.94
USP54-205ENST00000424265 OR51V1Q9H2C8 321 aa9.17□□□□□ -0.94
USP54-205ENST00000424265 METTL17Q9H7H0 456 aaPredicted RBP9.17□□□□□ -0.94
USP54-205ENST00000424265 ANXA2P2A6NMY6 339 aa9.17□□□□□ -0.94
USP54-205ENST00000424265 H2AFB2P0C5Z0 115 aa9.17□□□□□ -0.94
USP54-205ENST00000424265 BDKRB1P46663 353 aa9.17□□□□□ -0.94
USP54-205ENST00000424265 PSMA6P60900 246 aaKnown RBP9.17□□□□□ -0.94
USP54-205ENST00000424265 PTCHD3Q3KNS1 767 aa9.17□□□□□ -0.94
USP54-205ENST00000424265 FRG2Q64ET8 278 aa9.17□□□□□ -0.94
USP54-205ENST00000424265 H3F3CQ6NXT2 135 aa9.17□□□□□ -0.94
USP54-205ENST00000424265 FRG2BQ96QU4 278 aa9.17□□□□□ -0.94
USP54-205ENST00000424265 GGACTQ9BVM4 153 aa9.17□□□□□ -0.94
USP54-205ENST00000424265 ABCG5Q9H222 651 aa9.17□□□□□ -0.94
USP54-205ENST00000424265 KANTRA0A1W2PQU2 76 aa9.16□□□□□ -0.94
USP54-205ENST00000424265 ARPC5O15511 151 aa9.16□□□□□ -0.94
USP54-205ENST00000424265 OR1F1O43749 312 aa9.16□□□□□ -0.94
USP54-205ENST00000424265 SMPD2O60906 423 aa9.16□□□□□ -0.94
USP54-205ENST00000424265 RGS11O94810 467 aa9.16□□□□□ -0.94
USP54-205ENST00000424265 FGF2P09038 288 aa9.16□□□□□ -0.94
USP54-205ENST00000424265 AP3S2P59780 193 aa9.16□□□□□ -0.94
USP54-205ENST00000424265 MPEG1Q2M385 716 aa9.16□□□□□ -0.94
USP54-205ENST00000424265 NDUFAF6Q330K2 333 aa9.16□□□□□ -0.94
USP54-205ENST00000424265 SOWAHCQ53LP3 525 aaPredicted RBP9.16□□□□□ -0.94
USP54-205ENST00000424265 STRADBQ9C0K7 418 aa9.16□□□□□ -0.94
USP54-205ENST00000424265 BEX1Q9HBH7 125 aa9.16□□□□□ -0.94
USP54-205ENST00000424265 MGAT4CQ9UBM8 478 aa9.16□□□□□ -0.94
USP54-205ENST00000424265 OR1A2Q9Y585 309 aa9.16□□□□□ -0.94
USP54-205ENST00000424265 GMFGO60234 142 aa9.16□□□□□ -0.94
USP54-205ENST00000424265 OR4F21O95013 312 aa9.16□□□□□ -0.94
USP54-205ENST00000424265 ZNF888P0CJ79 500 aaPredicted RBP9.16□□□□□ -0.94
USP54-205ENST00000424265 NFYAP23511 347 aaPredicted RBP9.16□□□□□ -0.94
USP54-205ENST00000424265 PTBP1P26599 531 aaKnown RBP eCLIP9.16□□□□□ -0.94
USP54-205ENST00000424265 ECH1Q13011 328 aa9.16□□□□□ -0.94
USP54-205ENST00000424265 KIR2DS3Q14952 304 aa9.16□□□□□ -0.94
USP54-205ENST00000424265 HEPACAMQ14CZ8 416 aa9.16□□□□□ -0.94
USP54-205ENST00000424265 SCGB2B2Q4G0G5 96 aa9.16□□□□□ -0.94
USP54-205ENST00000424265 AGBL4Q5VU57 503 aa9.16□□□□□ -0.94
USP54-205ENST00000424265 GOLGA7Q7Z5G4 137 aa9.16□□□□□ -0.94
USP54-205ENST00000424265 C22orf15Q8WYQ4 148 aa9.16□□□□□ -0.94
USP54-205ENST00000424265 ITCHQ96J02 903 aa9.16□□□□□ -0.94
USP54-205ENST00000424265 AMBRA1Q9C0C7 1298 aa9.16□□□□□ -0.94
USP54-205ENST00000424265 REEP1Q9H902 201 aa9.16□□□□□ -0.94
USP54-205ENST00000424265 ZNF223Q9UK11 482 aaPredicted RBP9.16□□□□□ -0.94
USP54-205ENST00000424265 KLK4Q9Y5K2 254 aa9.16□□□□□ -0.94
USP54-205ENST00000424265 MRPS10P82664 201 aaKnown RBP9.16□□□□□ -0.94
USP54-205ENST00000424265 SLBPQ14493 270 aaKnown RBP eCLIP9.16□□□□□ -0.94
USP54-205ENST00000424265 ZNF528Q3MIS6 628 aa9.16□□□□□ -0.94
USP54-205ENST00000424265 PLXDC1Q8IUK5 500 aa9.16□□□□□ -0.94
USP54-205ENST00000424265 UBAC2Q8NBM4 344 aa9.16□□□□□ -0.94
USP54-205ENST00000424265 NEK7Q8TDX7 302 aa9.16□□□□□ -0.94
USP54-205ENST00000424265 ADAMTS18Q8TE60 1221 aa9.16□□□□□ -0.94
USP54-205ENST00000424265 NPRL2Q8WTW4 380 aa9.16□□□□□ -0.94
USP54-205ENST00000424265 S100A13Q99584 98 aa9.16□□□□□ -0.94
USP54-205ENST00000424265 MGLLQ99685 303 aa9.16□□□□□ -0.94
USP54-205ENST00000424265 CLN6Q9NWW5 311 aa9.16□□□□□ -0.94
USP54-205ENST00000424265 ZNF780BQ9Y6R6 833 aa9.16□□□□□ -0.94
USP54-205ENST00000424265 PDE4DIPQ5VU43 2346 aa9.16□□□□□ -0.94
USP54-205ENST00000424265 IQCF5A8MTL0 148 aa9.16□□□□□ -0.94
USP54-205ENST00000424265 GPR31O00270 319 aa9.16□□□□□ -0.94
USP54-205ENST00000424265 ANKRD28O15084 1053 aa9.16□□□□□ -0.94
USP54-205ENST00000424265 AHSA1O95433 338 aa9.16□□□□□ -0.94
USP54-205ENST00000424265 SLC34A2O95436 690 aa9.16□□□□□ -0.94
USP54-205ENST00000424265 CFDP00746 253 aaPredicted RBP9.16□□□□□ -0.94
USP54-205ENST00000424265 SPARCP09486 303 aa9.16□□□□□ -0.94
USP54-205ENST00000424265 PTPN6P29350 595 aa9.16□□□□□ -0.94
USP54-205ENST00000424265 FEN1P39748 380 aaKnown RBP9.16□□□□□ -0.94
USP54-205ENST00000424265 ATP4BP51164 291 aa9.16□□□□□ -0.94
USP54-205ENST00000424265 SRSF11Q05519 484 aaKnown RBP9.16□□□□□ -0.94
USP54-205ENST00000424265 PTGR1Q14914 329 aa9.16□□□□□ -0.94
USP54-205ENST00000424265 MEDAGQ5VYS4 303 aa9.16□□□□□ -0.94
USP54-205ENST00000424265 LCTLQ6UWM7 567 aa9.16□□□□□ -0.94
USP54-205ENST00000424265 ADGRF3Q8IZF5 1079 aa9.16□□□□□ -0.94
USP54-205ENST00000424265 HS3ST5Q8IZT8 346 aa9.16□□□□□ -0.94
USP54-205ENST00000424265 TERB2Q8NHR7 220 aa9.16□□□□□ -0.94
USP54-205ENST00000424265 RGMAQ96B86 450 aa9.16□□□□□ -0.94
USP54-205ENST00000424265 DUSP21Q9H596 190 aa9.16□□□□□ -0.94
USP54-205ENST00000424265 PLCXD1Q9NUJ7 323 aa9.16□□□□□ -0.94
USP54-205ENST00000424265 TMEM184CQ9NVA4 438 aa9.16□□□□□ -0.94
USP54-205ENST00000424265 ASF1BQ9NVP2 202 aa9.16□□□□□ -0.94
USP54-205ENST00000424265 GAR1Q9NY12 217 aaKnown RBP9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms