RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 CSN1S1P47710 185 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 RAB33AQ14088 237 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 HSF5Q4G112 596 aaPredicted RBP6.46□□□□□ -1.38
SCN1A-204ENST00000423058 SLC16A14Q7RTX9 510 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 KCTD20Q7Z5Y7 419 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 ISG20Q96AZ6 181 aaKnown RBP6.46□□□□□ -1.38
SCN1A-204ENST00000423058 ISYNA1Q9NPH2 558 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 GJD2Q9UKL4 321 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 KIAA0100Q14667 2235 aaKnown RBP6.46□□□□□ -1.38
SCN1A-204ENST00000423058 PPP1R3DO95685 299 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 ZNF728P0DKX0 622 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 RNF144AP50876 292 aaPredicted RBP6.46□□□□□ -1.38
SCN1A-204ENST00000423058 YPEL5P62699 121 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 TRA2BP62995 288 aaKnown RBP6.46□□□□□ -1.38
SCN1A-204ENST00000423058 SLC35A1P78382 337 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 CDKN3Q16667 212 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 CST9LP1Q5W188 147 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 PLBD1Q6P4A8 553 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 ZNF687Q8N1G0 1237 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 SUMF2Q8NBJ7 301 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 SMOQ99835 787 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 ULBP2Q9BZM5 246 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 TCEAL2Q9H3H9 227 aaPredicted RBP6.46□□□□□ -1.38
SCN1A-204ENST00000423058 KCNK12Q9HB15 430 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 RHBDD3Q9Y3P4 386 aa6.46□□□□□ -1.38
SCN1A-204ENST00000423058 NPIPA5A0A0B4J1W7 369 aa6.45□□□□□ -1.38
SCN1A-204ENST00000423058 NPIPA7E9PJI5 369 aa6.45□□□□□ -1.38
SCN1A-204ENST00000423058 RNF225M0QZC1 329 aaPredicted RBP6.45□□□□□ -1.38
SCN1A-204ENST00000423058 KLF11O14901 512 aa6.45□□□□□ -1.38
SCN1A-204ENST00000423058 CA3P07451 260 aa6.45□□□□□ -1.38
SCN1A-204ENST00000423058 SLC35E2BP0CK96 405 aa6.45□□□□□ -1.38
SCN1A-204ENST00000423058 NPIPA8P0DM63 369 aa6.45□□□□□ -1.38
SCN1A-204ENST00000423058 SNTB1Q13884 538 aaKnown RBP6.45□□□□□ -1.38
SCN1A-204ENST00000423058 EXT1Q16394 746 aa6.45□□□□□ -1.38
SCN1A-204ENST00000423058 TBRG1Q3YBR2 411 aa6.45□□□□□ -1.38
SCN1A-204ENST00000423058 COQ5Q5HYK3 327 aa6.45□□□□□ -1.38
SCN1A-204ENST00000423058 OR5W2Q8NH69 310 aa6.45□□□□□ -1.38
SCN1A-204ENST00000423058 LRFN5Q96NI6 719 aa6.45□□□□□ -1.38
SCN1A-204ENST00000423058 KCNA7Q96RP8 456 aa6.45□□□□□ -1.38
SCN1A-204ENST00000423058 ALG8Q9BVK2 526 aa6.45□□□□□ -1.38
SCN1A-204ENST00000423058 EBF2Q9HAK2 575 aa6.45□□□□□ -1.38
SCN1A-204ENST00000423058 TUBG2Q9NRH3 451 aa6.45□□□□□ -1.38
SCN1A-204ENST00000423058 UBQLN4Q9NRR5 601 aa6.45□□□□□ -1.38
SCN1A-204ENST00000423058 CPNE7Q9UBL6 633 aa6.45□□□□□ -1.38
SCN1A-204ENST00000423058 LAMB4A4D0S4 1761 aa6.45□□□□□ -1.38
SCN1A-204ENST00000423058 ECM29Q5VYK3 1845 aa6.45□□□□□ -1.38
SCN1A-204ENST00000423058 DPM1O60762 260 aa6.45□□□□□ -1.38
SCN1A-204ENST00000423058 CLDN8P56748 225 aa6.45□□□□□ -1.38
SCN1A-204ENST00000423058 SRPXP78539 464 aa6.45□□□□□ -1.38
SCN1A-204ENST00000423058 MEP1AQ16819 746 aa6.45□□□□□ -1.38
SCN1A-204ENST00000423058 DUSP7Q16829 419 aa6.45□□□□□ -1.38
SCN1A-204ENST00000423058 C6orf136Q5SQH8 315 aa6.45□□□□□ -1.38
SCN1A-204ENST00000423058 FAM69AQ5T7M9 428 aa6.45□□□□□ -1.38
SCN1A-204ENST00000423058 FBXW12Q6X9E4 464 aa6.45□□□□□ -1.38
SCN1A-204ENST00000423058 GCNT2Q8N0V5 402 aa6.45□□□□□ -1.38
SCN1A-204ENST00000423058 C12orf76Q8N812 135 aaPredicted RBP6.45□□□□□ -1.38
SCN1A-204ENST00000423058 MUL1Q969V5 352 aa6.45□□□□□ -1.38
SCN1A-204ENST00000423058 TRIB1Q96RU8 372 aa6.45□□□□□ -1.38
SCN1A-204ENST00000423058 PIGQQ9BRB3 760 aa6.45□□□□□ -1.38
SCN1A-204ENST00000423058 KCNJ16Q9NPI9 418 aa6.45□□□□□ -1.38
SCN1A-204ENST00000423058 OR6C2Q9NZP2 312 aa6.45□□□□□ -1.38
SCN1A-204ENST00000423058 SIX4Q9UIU6 781 aa6.45□□□□□ -1.38
SCN1A-204ENST00000423058 SPAG17Q6Q759 2223 aa6.45□□□□□ -1.38
SCN1A-204ENST00000423058 MYOCOSA0A1B0GUC4 107 aa6.45□□□□□ -1.38
SCN1A-204ENST00000423058 A0A1W2PS29 197 aa6.45□□□□□ -1.38
SCN1A-204ENST00000423058 SGK494L7N484 410 aa6.45□□□□□ -1.38
SCN1A-204ENST00000423058 CHEK1O14757 476 aa6.45□□□□□ -1.38
SCN1A-204ENST00000423058 FGF4P08620 206 aa6.45□□□□□ -1.38
SCN1A-204ENST00000423058 LTB4RQ15722 352 aa6.45□□□□□ -1.38
SCN1A-204ENST00000423058 NADSYN1Q6IA69 706 aa6.45□□□□□ -1.38
SCN1A-204ENST00000423058 PDZD3Q86UT5 571 aa6.45□□□□□ -1.38
SCN1A-204ENST00000423058 ZNF595Q8IYB9 648 aa6.45□□□□□ -1.38
SCN1A-204ENST00000423058 ESX1Q8N693 406 aa6.45□□□□□ -1.38
SCN1A-204ENST00000423058 KRTCAP2Q8N6L1 136 aa6.45□□□□□ -1.38
SCN1A-204ENST00000423058 STT3BQ8TCJ2 826 aa6.45□□□□□ -1.38
SCN1A-204ENST00000423058 PHOX2BQ99453 314 aa6.45□□□□□ -1.38
SCN1A-204ENST00000423058 DHRS9Q9BPW9 319 aa6.45□□□□□ -1.38
SCN1A-204ENST00000423058 FAM96BQ9Y3D0 163 aa6.45□□□□□ -1.38
SCN1A-204ENST00000423058 PRSS38A1L453 326 aa6.45□□□□□ -1.38
SCN1A-204ENST00000423058 SCRG1O75711 98 aa6.45□□□□□ -1.38
SCN1A-204ENST00000423058 ECI1P42126 302 aa6.45□□□□□ -1.38
SCN1A-204ENST00000423058 GABARAPL2P60520 117 aa6.45□□□□□ -1.38
SCN1A-204ENST00000423058 AKR1C1Q04828 323 aa6.45□□□□□ -1.38
SCN1A-204ENST00000423058 CMPK2Q5EBM0 449 aa6.45□□□□□ -1.38
SCN1A-204ENST00000423058 ADIPOR2Q86V24 386 aa6.45□□□□□ -1.38
SCN1A-204ENST00000423058 M1APQ8TC57 530 aa6.45□□□□□ -1.38
SCN1A-204ENST00000423058 MYLIPQ8WY64 445 aa6.45□□□□□ -1.38
SCN1A-204ENST00000423058 DDX1Q92499 740 aaKnown RBP6.45□□□□□ -1.38
SCN1A-204ENST00000423058 ZNF566Q969W8 418 aa6.45□□□□□ -1.38
SCN1A-204ENST00000423058 EBF4Q9BQW3 602 aa6.45□□□□□ -1.38
SCN1A-204ENST00000423058 OR51E2Q9H255 320 aa6.45□□□□□ -1.38
SCN1A-204ENST00000423058 RNF39Q9H2S5 420 aa6.45□□□□□ -1.38
SCN1A-204ENST00000423058 PPA2Q9H2U2 334 aa6.45□□□□□ -1.38
SCN1A-204ENST00000423058 ANKRD19PQ9H560 264 aa6.45□□□□□ -1.38
SCN1A-204ENST00000423058 ATP13A2Q9NQ11 1180 aa6.45□□□□□ -1.38
SCN1A-204ENST00000423058 DMAC2Q9NW81 257 aa6.45□□□□□ -1.38
SCN1A-204ENST00000423058 PCDHGA7Q9Y5G6 932 aa6.45□□□□□ -1.38
SCN1A-204ENST00000423058 GJB5O95377 273 aa6.45□□□□□ -1.38
SCN1A-204ENST00000423058 DCNP07585 359 aaKnown RBP6.45□□□□□ -1.38
SCN1A-204ENST00000423058 UBCP0CG48 685 aaKnown RBP6.45□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms